genome.fa.s101.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  75  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13531743--13531798	25	2.3	25	87	3	78	10	5	5	78	1.07
13531743--13531798	8	6.9	8	72	11	51	10	5	5	78	1.07
13531754--13531807	25	2.2	25	82	0	63	12	3	5	77	1.07
13531860--13531893	15	2.4	14	90	5	50	5	2	8	82	0.93
13532009--13532058	12	4.3	12	72	10	50	24	10	8	58	1.57
13532107--13532149	17	2.4	19	78	21	56	20	2	4	72	1.14
13532414--13532499	7	11.7	7	72	14	66	11	6	2	79	1.02
13532414--13532499	22	3.9	21	76	11	75	11	6	2	79	1.02
13532432--13532511	33	2.3	36	81	16	89	11	7	3	77	1.10
13532484--13532534	18	2.9	18	77	16	54	13	7	1	76	1.09
13532474--13532548	34	2.2	34	81	9	82	14	8	1	76	1.08
13532991--13533026	18	2.0	18	94	0	63	13	13	0	72	1.13
13532997--13533047	15	3.3	15	76	15	50	17	7	1	72	1.18
13533308--13533369	15	3.9	15	78	16	54	19	8	3	69	1.28
13533484--13533532	24	2.0	25	84	8	64	10	4	4	81	0.95
13533538--13533616	35	2.2	35	82	10	90	12	12	2	72	1.23
13533998--13534042	16	2.9	15	84	12	56	13	8	4	73	1.23
13534372--13534414	17	2.4	18	80	7	52	18	4	4	72	1.20
13535153--13535214	15	3.9	15	78	16	54	19	8	3	69	1.28
13535597--13535640	15	3.1	14	81	9	54	18	2	2	77	0.98
13535994--13536029	18	2.0	18	88	0	54	13	13	2	69	1.30
13536177--13536235	25	2.4	24	80	2	64	13	8	5	72	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13536291--13536333	7	5.9	7	84	15	52	11	0	6	81	0.87
13536619--13536662	23	1.9	23	86	9	63	15	6	0	77	0.97
13536881--13536922	17	2.4	18	81	18	61	19	2	4	73	1.12
13537764--13537799	18	2.0	18	94	0	63	13	8	5	72	1.27
13537877--13537927	19	2.6	19	75	9	50	15	7	5	70	1.30
13537986--13538037	21	2.5	21	81	9	61	9	7	5	76	1.14
13538981--13539042	15	3.9	15	78	16	54	19	8	3	69	1.28
13539209--13539287	35	2.2	35	82	10	90	12	12	2	72	1.23
13539370--13539403	11	3.2	11	91	4	52	11	5	0	82	0.83
13539375--13539405	11	2.8	11	95	0	53	16	6	0	77	0.97
13539518--13539544	14	1.9	14	100	0	54	25	0	0	74	0.83
13539543--13539585	17	2.4	18	84	7	61	13	6	6	72	1.27
13539921--13539956	18	2.0	18	94	0	63	13	13	5	66	1.41
13539972--13540007	18	1.9	19	88	5	56	16	2	5	75	1.12
13540093--13540135	16	2.8	15	83	13	52	11	9	4	74	1.20
13540456--13540495	18	2.2	18	91	8	64	17	5	5	72	1.21
13540558--13540607	26	1.9	26	83	0	64	8	20	2	70	1.23
13540741--13540770	12	2.4	12	94	5	51	13	6	3	76	1.11
13540751--13540833	15	5.5	15	74	7	60	12	6	3	78	1.06
13540768--13540806	7	5.3	7	82	11	51	15	5	0	79	0.90
13540837--13540894	22	2.7	22	76	12	66	13	8	1	75	1.10
13540801--13540894	28	3.5	27	73	13	95	11	7	5	75	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13540802--13540905	53	2.0	53	81	7	122	13	7	4	74	1.21
13541348--13541383	18	2.0	18	88	0	54	13	13	2	69	1.30
13541536--13541696	7	21.6	7	67	19	53	11	6	4	76	1.14
13542662--13542710	18	2.9	17	76	8	55	12	8	4	75	1.16
13542805--13542883	35	2.2	35	82	10	90	12	10	2	74	1.16
13543463--13543498	18	2.0	18	88	0	54	11	13	2	72	1.23
13543514--13543558	19	2.4	19	88	7	65	17	4	4	73	1.17
13543649--13543705	24	2.3	26	82	11	66	7	12	8	71	1.29
13543761--13543803	14	3.1	13	83	12	50	9	6	2	81	0.95
13559208--13559235	14	2.0	14	100	0	56	71	7	21	0	1.09
13561408--13561449	3	14.0	3	100	0	84	66	0	0	33	0.92
13570937--13571162	14	13.8	17	67	28	59	48	1	1	49	1.18
13570935--13570977	22	2.0	21	83	16	54	48	0	0	51	1.00
13571038--13571107	7	9.3	7	71	20	52	54	0	0	45	0.99
13571187--13571251	22	2.9	23	72	17	57	47	0	4	47	1.22
13571412--13571454	18	2.4	19	81	11	56	55	0	0	44	0.99
13571413--13571472	27	2.2	28	82	14	81	55	0	0	45	0.99
13571581--13571630	13	3.7	13	80	17	57	56	2	0	42	1.11
13571588--13571627	15	2.9	14	88	7	55	57	2	0	40	1.12
13571763--13571864	32	3.2	32	77	15	106	48	0	1	50	1.12
13571818--13571866	13	3.2	15	80	19	57	51	0	0	48	1.00
13572298--13572367	24	2.8	26	79	14	76	50	2	1	45	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13572496--13572525	13	2.3	13	94	0	51	50	0	0	50	1.00
13572690--13572752	31	2.0	32	84	9	85	49	1	0	49	1.10
13572826--13572891	29	2.4	27	85	10	80	48	3	3	45	1.33
13573020--13573122	13	8.3	13	68	20	51	48	0	1	49	1.12
13573418--13573452	17	2.1	18	89	10	56	40	0	0	60	0.97
13573598--13573650	26	1.9	29	85	11	76	45	3	3	47	1.39
13574153--13574457	162	1.9	163	80	3	364	40	5	8	44	1.59
13574826--13575270	180	2.4	181	80	6	436	42	10	8	38	1.70
13574577--13575413	361	2.3	359	79	7	806	41	9	9	39	1.70
13574315--13576998	181	15.0	180	74	9	1504	40	8	9	41	1.68
13575512--13577758	181	12.3	180	73	9	1228	41	8	9	41	1.67
13574315--13576849	360	7.1	352	73	9	1264	40	8	9	41	1.68
13575635--13576795	537	2.2	537	79	6	1217	40	6	9	42	1.64
13575641--13576979	718	1.9	718	80	6	1575	40	7	9	42	1.65
13577139--13577605	177	2.6	179	82	3	519	41	7	9	40	1.66
13578034--13579100	181	5.9	179	76	7	873	39	7	10	42	1.69
13578034--13579003	362	2.7	356	80	6	1033	39	7	10	42	1.68
13579124--13579186	28	2.3	27	82	12	76	42	1	0	55	1.09
13579249--13579314	10	6.7	10	84	3	80	48	4	0	46	1.22
13579249--13579314	30	2.2	29	89	2	96	48	4	0	46	1.22
13579248--13579294	20	2.3	20	100	0	94	48	4	0	46	1.21
13579211--13579349	10	13.2	10	70	18	52	48	2	2	46	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13579604--13579657	17	2.8	20	75	18	60	46	1	0	51	1.11
13579827--13579905	31	2.5	31	75	19	83	41	1	0	56	1.07
13579869--13580052	72	2.5	71	73	12	167	45	3	0	50	1.22
13580055--13580188	41	3.2	40	72	23	114	50	2	0	47	1.19
13580071--13580167	46	2.1	45	83	12	119	51	2	0	46	1.12
13580071--13580135	24	3.0	21	70	16	60	49	1	0	49	1.10
13581104--13581164	17	3.3	19	80	19	67	55	0	4	39	1.21
13581176--13581217	9	4.7	9	85	11	59	45	0	0	54	0.99
13581176--13581228	17	3.2	17	80	15	58	47	0	0	52	1.00
13581216--13581240	13	1.9	13	100	0	50	52	0	0	48	1.00
13581184--13581240	24	2.5	23	76	20	66	47	0	0	52	1.00
13581256--13581307	22	2.2	25	83	10	74	42	1	0	55	1.10
13581484--13581525	12	3.2	13	80	10	50	54	0	0	45	0.99
13581787--13581846	29	2.0	31	83	6	79	53	5	1	40	1.33
13582312--13582368	17	3.5	17	79	16	75	47	1	0	50	1.11
13582416--13582456	20	2.0	20	85	9	55	48	2	0	48	1.14
13582919--13582960	17	2.4	18	80	15	52	40	0	2	57	1.12
13583151--13583207	17	3.9	15	78	19	59	50	0	1	47	1.11
13583439--13583483	19	2.4	19	85	10	58	53	0	4	42	1.21
13583789--13583926	67	2.1	67	90	2	215	36	11	8	43	1.72
13583856--13585332	181	8.3	180	75	7	1037	40	9	8	41	1.69
13583856--13584970	357	3.1	354	80	5	1150	41	9	7	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13585232--13585463	120	1.9	120	84	1	304	33	12	7	46	1.70
13585561--13585593	17	2.0	17	88	5	50	39	12	0	48	1.40
13585352--13587389	181	11.4	180	77	7	1566	41	9	8	40	1.68
13585998--13586044	24	2.0	24	84	12	62	57	0	2	40	1.11
13586964--13587275	171	1.8	171	84	1	428	39	11	8	40	1.71
13587459--13589938	181	13.7	179	76	9	1705	41	9	8	40	1.68
13587823--13587858	16	2.1	17	90	10	56	41	0	8	50	1.33
13587459--13590830	181	18.8	178	73	11	1145	41	9	8	40	1.68
13587394--13590830	361	9.6	361	74	10	1961	41	9	8	40	1.68
13587399--13589938	542	4.7	539	78	8	2013	41	9	8	40	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117