genome.fa.s101.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  35  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5903714--5903751	18	2.1	19	85	14	53	55	2	0	42	1.14
5907003--5907034	12	2.6	13	85	14	50	0	15	0	84	0.63
5910006--5910052	23	2.0	23	87	0	67	29	2	25	42	1.67
5920633--5920682	20	2.5	20	93	6	84	52	0	0	48	1.00
5925644--5925699	29	2.0	27	80	16	62	50	0	12	37	1.41
5928201--5928258	30	1.9	30	85	0	80	43	6	13	36	1.71
5929611--5929639	9	3.3	9	95	4	51	82	0	0	17	0.66
5939427--5939643	107	2.0	108	90	0	346	46	16	14	22	1.84
5941875--5941913	19	2.1	19	85	0	51	48	5	12	33	1.63
5952434--5952465	2	16.0	2	100	0	64	50	0	0	50	1.00
5963355--5963390	10	3.6	10	89	10	56	75	0	0	25	0.81
5963355--5963389	11	3.4	11	92	7	56	77	0	0	22	0.78
5963429--5963488	11	5.2	11	76	9	57	48	3	8	40	1.50
5963524--5963565	20	2.1	20	86	8	59	40	0	0	59	0.97
5963554--5963715	79	2.1	79	96	0	297	59	0	0	39	1.02
5963612--5963666	22	2.5	22	77	14	60	63	0	0	36	0.95
5964354--5964405	22	2.5	20	81	9	59	46	0	1	51	1.12
5964357--5964460	45	2.3	44	81	6	111	41	0	0	56	1.12
5964388--5964460	16	4.7	17	76	22	72	38	1	0	60	1.06
5975809--5975869	26	2.3	25	81	13	68	37	3	0	59	1.14
5976031--5976089	27	2.2	27	81	6	66	50	0	6	42	1.28
5977651--5977698	16	3.0	15	84	9	51	62	4	6	27	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5988381--5988419	15	2.3	18	83	16	57	43	5	0	51	1.24
5988371--5988420	18	2.7	19	77	20	61	42	4	0	54	1.19
5988812--5988852	20	2.0	20	100	0	82	19	24	14	41	1.89
5989353--5989403	26	2.0	24	82	14	59	33	0	5	60	1.21
5989436--5989478	19	2.2	19	84	12	52	86	4	2	6	0.79
5989433--5989477	14	3.1	14	80	3	54	84	4	2	8	0.84
5990218--5990794	177	3.3	177	92	1	953	22	18	33	25	1.96
5990819--5991073	127	2.0	126	99	0	501	27	21	25	25	1.99
5992703--5992727	13	1.9	13	100	0	50	76	0	0	24	0.80
5992772--5992819	16	2.9	17	77	17	57	29	0	0	70	0.87
5994042--5994084	22	2.0	20	82	8	50	25	4	0	69	1.07
5995670--5995734	28	2.4	28	85	7	82	38	4	3	53	1.37
6000813--6000843	14	2.1	15	94	5	55	41	0	3	54	1.16
6000916--6001032	10	11.9	10	68	20	59	38	0	0	60	1.03
6000916--6001048	18	7.4	18	72	13	69	39	0	0	60	1.02
6000922--6001048	15	8.3	15	72	15	82	39	0	0	59	1.03
6000916--6001048	63	2.1	64	86	5	182	39	0	0	60	1.02
6000929--6001042	27	4.3	28	75	13	109	41	0	0	57	1.04
6000920--6001048	45	2.9	45	77	14	151	39	0	0	59	1.03
6006477--6006528	23	2.2	24	89	3	79	73	0	1	25	0.94
6009134--6009169	6	6.2	6	87	6	56	13	0	2	83	0.76
6010259--6010292	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6017847--6017878	16	2.0	16	100	0	64	31	0	12	56	1.37
6024208--6024265	31	1.9	30	89	10	91	34	3	3	58	1.32
6024214--6024272	31	2.0	31	84	12	81	35	5	5	54	1.45
6026803--6026852	2	25.5	2	79	4	57	42	8	0	50	1.32
6032929--6033000	27	2.6	28	77	14	78	18	0	18	63	1.30
6035624--6035656	15	2.1	16	88	5	50	48	0	3	48	1.17
6035679--6035770	23	4.0	24	70	20	65	56	2	3	38	1.28
6035720--6035794	27	2.8	28	74	13	75	58	2	1	37	1.20
6036174--6036222	20	2.6	19	78	15	57	53	6	4	36	1.45
6044601--6044636	2	18.5	2	94	5	65	50	0	0	50	1.00
6053136--6053175	20	1.9	22	85	10	57	32	2	0	65	1.06
6057181--6057246	29	2.2	29	89	7	98	40	1	0	57	1.08
6057531--6057568	18	2.2	17	86	9	51	26	0	0	73	0.83
6057968--6058018	13	3.8	13	76	19	50	62	3	0	33	1.13
6060068--6060138	29	2.4	30	80	17	87	47	0	1	50	1.09
6061758--6061823	19	3.2	22	71	20	61	40	0	1	57	1.08
6061876--6061918	21	2.0	22	95	4	79	37	13	11	37	1.82
6062232--6062287	26	2.3	23	82	17	76	60	0	0	39	0.97
6062239--6062280	11	3.3	12	76	23	50	61	0	0	38	0.96
6062230--6062300	18	4.1	18	74	17	60	59	0	0	40	0.98
6068427--6068484	21	2.7	22	76	17	59	41	0	6	51	1.28
6071688--6071720	10	3.4	10	87	8	50	57	9	33	0	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6073321--6073546	111	2.0	111	94	0	398	34	10	16	38	1.83
6076486--6076540	19	2.9	19	74	20	62	65	0	1	32	1.03
6077305--6077383	41	2.0	40	82	12	99	46	1	1	50	1.17
6077305--6077383	40	2.0	41	82	7	99	46	1	1	50	1.17
6081888--6081921	16	2.2	15	89	5	50	23	2	2	70	1.15
6081937--6081973	3	12.7	3	94	5	67	35	0	0	64	0.94
6087454--6087522	27	2.6	27	86	4	95	46	15	11	26	1.80
6088252--6088281	2	15.0	2	100	0	60	50	0	0	50	1.00
6090970--6091024	24	2.4	23	75	6	58	47	5	0	47	1.25
6090989--6091166	63	2.8	63	76	12	175	39	4	3	52	1.38
6091327--6091485	61	2.6	62	83	6	205	41	6	6	45	1.54
6091409--6091583	94	1.9	94	85	7	248	43	8	4	44	1.54
6091503--6091655	58	2.6	61	81	13	171	40	7	4	47	1.51
6091348--6091640	156	1.9	154	84	9	402	42	7	5	45	1.53
6097009--6097035	1	27.0	1	100	0	54	0	0	0	100	0.00
6099309--6099340	3	10.7	3	100	0	64	68	31	0	0	0.90
6100167--6100192	2	13.0	2	100	0	52	50	0	0	50	1.00
6107227--6107252	3	8.7	3	100	0	52	34	0	34	30	1.58
6110503--6110539	14	2.6	14	95	0	65	67	5	0	27	1.12
6111042--6111094	17	3.1	18	78	10	58	41	3	1	52	1.30
6117503--6117527	6	4.2	6	100	0	50	68	0	16	16	1.22
6120573--6120639	34	2.0	34	100	0	134	23	22	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6121054--6121086	2	16.5	2	93	0	57	48	3	0	48	1.17
6121362--6121390	13	2.1	14	93	6	51	41	0	0	58	0.98
6133282--6133346	26	2.5	25	69	13	60	38	6	13	41	1.70
6133282--6133337	27	2.1	27	83	6	69	35	5	14	44	1.68
6133775--6133803	15	1.9	15	100	0	58	31	13	0	55	1.39
6143880--6143909	2	15.0	2	92	0	51	53	0	0	46	1.00
6151079--6151163	32	2.6	33	75	14	86	31	7	11	49	1.66
6152856--6152935	33	2.5	32	75	18	76	42	0	2	55	1.13
6152939--6152980	18	2.3	19	91	4	68	69	2	0	28	1.01
6153313--6153343	2	15.5	2	100	0	62	51	0	0	48	1.00
6153348--6154103	252	3.0	252	97	0	1426	32	20	17	28	1.96
6154418--6154452	17	2.1	17	94	0	61	28	14	11	45	1.79
6162242--6162321	33	2.5	32	75	18	76	42	0	2	55	1.13
6162325--6162366	18	2.3	19	91	4	68	69	2	0	28	1.01
6162725--6163479	252	3.0	252	98	0	1449	33	20	18	28	1.96
6163598--6163622	13	1.9	13	100	0	50	0	0	8	92	0.40
6163794--6163828	17	2.1	17	94	0	61	28	14	11	45	1.79
6168848--6168881	15	2.2	16	89	5	52	38	0	0	61	0.96
6168939--6168982	19	2.3	19	80	7	54	38	0	2	59	1.10
6172153--6172180	2	14.0	2	100	0	56	50	0	0	50	1.00
6172558--6172595	2	19.0	2	88	0	58	50	2	2	44	1.30
6192664--6192723	15	3.9	14	80	12	57	53	1	0	45	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6192655--6192723	32	2.2	32	86	2	95	56	1	0	42	1.08
6192648--6192722	31	2.3	33	79	9	91	57	1	1	40	1.16
6193530--6193572	21	2.1	20	83	12	52	39	2	4	53	1.34
6194749--6194805	16	3.4	16	72	13	53	66	1	0	31	1.02
6194745--6194828	36	2.5	36	86	9	115	64	1	0	34	1.02
6194780--6194823	15	3.0	14	80	9	52	61	0	0	38	0.96
6195326--6195434	54	2.0	54	85	3	148	30	9	12	47	1.73
6195659--6195683	13	1.9	13	100	0	50	32	0	0	68	0.90
6210246--6210280	15	2.3	15	90	9	54	74	0	2	22	0.95
6217179--6217388	114	1.8	114	84	0	285	20	22	20	37	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117