genome.fa.s101.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  30  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4386265--4386292	2	14.0	2	100	0	56	50	0	0	50	1.00
4386409--4386447	19	2.0	20	90	5	62	46	12	33	7	1.71
4390669--4390711	13	3.2	13	81	12	50	62	0	2	34	1.08
4390668--4390711	15	3.1	15	83	6	56	63	0	2	34	1.07
4392259--4392372	57	2.0	57	92	0	192	31	11	18	38	1.86
4398586--4398610	13	1.9	13	100	0	50	24	0	0	76	0.80
4401825--4401853	2	14.5	2	100	0	58	51	0	0	48	1.00
4403648--4403925	137	2.0	139	89	2	425	32	19	18	29	1.96
4408094--4408137	22	2.0	23	86	8	65	54	2	4	38	1.33
4413571--4413696	63	2.0	63	95	3	227	15	14	30	39	1.87
4416331--4416388	22	2.6	23	78	18	68	60	1	0	37	1.07
4418051--4418102	13	4.2	13	80	9	54	51	0	0	48	1.00
4418028--4418084	18	3.4	18	68	22	52	52	0	0	47	1.00
4418064--4418119	29	2.0	28	82	10	69	53	0	0	46	1.00
4418063--4418132	24	3.0	24	74	13	67	58	0	0	41	0.98
4422492--4422520	10	2.7	11	89	10	51	27	0	0	72	0.85
4422549--4422592	21	2.0	22	82	8	54	54	2	0	43	1.12
4422711--4422748	2	19.0	2	94	0	67	50	0	2	47	1.15
4432306--4432336	14	2.3	13	94	5	53	35	0	19	45	1.51
4445693--4446006	170	1.9	169	88	2	477	32	4	14	47	1.66
4447316--4447372	13	4.3	13	78	14	55	49	0	0	50	1.00
4447316--4447372	25	2.1	28	87	9	84	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4447825--4447869	22	2.1	22	87	4	65	51	0	0	48	1.00
4449689--4449713	1	25.0	1	100	0	50	0	0	0	100	0.00
4451861--4451891	2	15.5	2	100	0	62	48	0	51	0	1.00
4455628--4455665	18	2.1	19	85	14	53	39	0	0	60	0.97
4455691--4455741	22	2.4	20	81	18	59	54	0	0	45	0.99
4455692--4455740	20	2.4	21	80	13	66	55	0	0	44	0.99
4463703--4463747	2	23.0	2	90	4	74	0	53	0	46	1.00
4485018--4485051	14	2.5	13	86	13	50	44	5	5	44	1.52
4485818--4485923	53	2.0	53	100	0	212	52	13	3	30	1.57
4488818--4488851	17	1.9	18	94	5	61	0	2	11	85	0.71
4488943--4489023	30	2.7	30	84	0	99	34	12	0	53	1.39
4495322--4495372	13	4.1	13	78	16	63	49	5	0	45	1.26
4495319--4495381	25	2.5	25	85	10	83	49	6	1	42	1.37
4501837--4501861	4	6.2	4	100	0	50	24	0	0	76	0.80
4506632--4506657	3	8.7	3	100	0	52	34	0	65	0	0.93
4507517--4507560	2	22.0	2	100	0	88	50	0	50	0	1.00
4510678--4510713	18	1.9	19	88	5	56	30	2	8	58	1.42
4513267--4513308	21	2.0	21	100	0	84	33	23	28	14	1.94
4514340--4514387	4	12.0	4	95	0	87	47	0	52	0	1.00
4518598--4518628	2	16.0	2	93	6	55	51	0	0	48	1.00
4524628--4524683	24	2.3	25	81	9	71	14	17	39	28	1.89
4526892--4526929	7	5.4	7	93	0	58	2	18	44	34	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4527394--4527423	14	2.1	15	93	6	53	46	0	0	53	1.00
4535582--4535628	2	23.5	2	95	0	85	51	48	0	0	1.00
4546528--4546631	32	4.1	24	68	25	70	47	0	0	51	1.07
4546645--4546677	16	2.0	17	94	5	59	66	0	0	33	0.92
4562874--4563348	234	2.0	234	99	0	941	39	17	12	31	1.86
4567835--4567918	18	4.7	18	77	12	75	47	0	0	52	1.00
4567829--4567918	14	5.7	15	71	16	58	45	0	0	54	0.99
4567875--4567929	9	6.3	9	72	16	53	49	0	0	50	1.00
4567941--4567971	16	1.9	16	93	0	53	70	0	0	29	0.87
4577725--4577820	30	3.2	30	79	8	115	42	5	10	41	1.61
4585286--4585410	4	30.8	4	71	9	74	70	10	3	16	1.28
4585286--4585414	20	6.2	20	74	12	107	70	10	3	15	1.28
4585327--4585414	15	5.9	15	72	9	63	71	12	2	13	1.24
4585832--4585859	14	2.0	14	100	0	56	57	7	7	28	1.52
4586349--4586395	17	2.7	18	80	9	53	70	0	6	23	1.10
4586409--4586463	11	5.2	10	80	10	56	72	0	5	21	1.04
4586409--4586468	21	2.8	20	75	12	57	71	0	6	21	1.08
4592811--4592839	11	2.7	11	94	5	51	86	0	6	6	0.72
4596520--4596916	198	2.0	198	98	0	767	36	12	18	33	1.88
4598327--4598370	3	14.7	3	100	0	88	65	0	0	34	0.93
4611161--4611248	45	2.0	45	86	0	122	51	5	5	37	1.50
4613057--4613103	20	2.3	20	92	0	76	76	0	14	8	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4613159--4613218	6	9.8	6	78	3	66	30	5	3	61	1.33
4613176--4613224	18	2.7	18	90	3	71	26	2	8	63	1.34
4613192--4613232	19	2.2	19	86	0	55	21	0	12	65	1.25
4614263--4614297	6	5.8	6	87	12	54	17	0	0	82	0.66
4614265--4614303	12	3.2	12	82	17	53	15	2	0	82	0.79
4614263--4614297	17	2.0	17	94	5	61	17	0	0	82	0.66
4614837--4614878	2	21.0	2	90	0	66	50	45	4	0	1.23
4618516--4618552	17	2.2	17	90	0	56	45	0	2	51	1.15
4618664--4618707	22	1.9	23	86	9	63	56	4	0	38	1.20
4618683--4618719	17	2.3	16	90	9	58	48	2	0	48	1.15
4618891--4618940	17	2.9	17	77	11	57	44	0	0	56	0.99
4621188--4621235	20	2.3	20	79	10	53	35	22	12	29	1.91
4628447--4628513	10	6.8	10	76	10	66	58	4	1	35	1.28
4628448--4628510	19	3.3	19	74	14	58	58	4	1	34	1.29
4628506--4628539	12	2.8	12	90	0	50	79	5	0	14	0.91
4628542--4628584	21	2.0	22	91	8	72	37	4	0	58	1.19
4628547--4628592	20	2.2	21	84	3	58	47	6	0	45	1.28
4628547--4628591	21	2.1	21	83	0	54	48	6	0	44	1.29
4628620--4628668	10	4.9	10	82	7	55	55	8	2	34	1.41
4628659--4628699	19	2.2	19	86	4	57	60	2	2	34	1.23
4628600--4628700	30	3.4	30	76	14	93	57	5	1	34	1.34
4628600--4628701	20	5.2	19	77	12	91	56	5	1	35	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4628741--4628784	21	2.2	19	88	8	61	59	4	2	34	1.30
4628904--4628943	20	2.0	21	85	5	55	50	5	7	37	1.53
4628891--4628956	21	3.2	20	72	14	55	53	3	7	36	1.45
4628931--4629010	26	3.0	25	80	12	72	55	1	6	37	1.33
4629053--4629094	19	2.2	19	86	0	57	64	2	2	30	1.19
4629134--4629176	19	2.4	17	75	17	50	37	2	4	55	1.33
4629248--4629292	19	2.5	18	85	7	65	22	2	6	68	1.24
4629334--4629523	20	9.2	19	67	20	71	35	3	5	56	1.38
4629391--4629534	32	4.6	30	74	14	121	36	1	4	58	1.26
4629456--4629559	42	2.5	43	75	12	108	40	3	1	53	1.30
4630392--4630421	2	15.0	2	92	0	51	46	0	0	53	1.00
4634239--4634377	30	4.7	29	76	5	118	38	6	2	51	1.42
4634242--4634368	60	2.1	58	80	11	141	40	6	2	51	1.40
4634408--4634470	29	2.2	30	83	16	80	52	1	6	39	1.37
4641673--4641808	15	8.5	15	69	21	80	51	0	0	48	1.00
4641680--4641823	28	5.1	28	70	21	104	50	0	0	49	1.05
4641749--4641818	11	6.3	11	75	14	54	48	0	0	51	1.00
4641670--4641829	33	4.8	33	75	19	129	50	0	0	49	1.05
4641704--4641788	37	2.3	36	93	4	143	49	0	0	50	1.00
4641672--4641843	83	2.1	82	83	7	215	50	1	0	48	1.08
4642009--4642069	10	6.1	10	75	7	52	24	0	6	68	1.13
4642970--4643009	16	2.5	16	84	11	55	7	12	0	80	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4643046--4643093	17	3.1	15	80	11	53	27	0	4	68	1.07
4643023--4643101	31	2.5	33	80	14	94	24	0	7	68	1.15
4643046--4643108	33	2.0	31	84	6	81	26	1	4	66	1.20
4643637--4643690	23	2.4	22	76	11	56	75	0	5	18	0.98
4643636--4643692	13	4.4	13	74	14	55	73	0	5	21	1.02
4661147--4661243	33	2.9	33	83	6	124	32	19	12	35	1.89
4661484--4661560	35	2.2	35	83	2	91	25	14	23	36	1.93
4661498--4661676	36	5.0	35	71	10	128	32	13	17	36	1.88
4663649--4663719	21	3.3	21	81	11	65	63	2	2	30	1.23
4663663--4663737	22	3.4	22	83	7	80	69	0	4	26	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117