genome.fa.s101.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  116  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19901472--19901524	26	2.0	26	88	0	79	28	16	24	30	1.97
19902343--19902395	26	2.0	26	92	0	88	26	16	26	30	1.97
19904137--19904189	26	2.0	26	96	0	97	26	18	26	28	1.98
19905029--19905083	25	2.2	26	90	3	85	29	18	21	30	1.97
19906757--19906827	26	2.7	26	95	0	124	28	18	21	32	1.96
19905883--19909645	865	4.3	876	82	6	4114	25	24	24	25	2.00
19908536--19908588	26	2.0	26	96	0	97	26	18	26	28	1.98
19909400--19909452	26	2.0	26	88	0	79	30	18	22	28	1.98
19909688--19909740	26	2.0	26	96	0	97	26	18	26	28	1.98
19909358--19909935	288	2.0	288	85	2	777	22	28	29	20	1.98
19910879--19911299	211	2.0	211	89	0	646	24	18	17	39	1.92
19912543--19912594	26	2.0	25	92	3	86	30	21	21	26	1.98
19913402--19913480	26	3.0	26	100	0	158	26	16	26	30	1.97
19914293--19914342	26	1.9	26	95	0	91	28	18	26	28	1.98
19913723--19916301	897	2.9	889	85	4	3330	25	23	24	26	2.00
19915190--19915240	26	2.0	26	92	0	84	27	21	21	29	1.99
19916084--19916135	26	2.0	26	88	0	77	28	15	21	34	1.94
19917087--19917136	26	1.9	26	95	0	91	28	20	32	20	1.97
19918647--19918699	26	2.0	26	92	0	88	26	18	24	30	1.98
19919789--19919813	10	2.5	10	100	0	50	20	16	8	56	1.65
19920236--19920288	26	2.0	26	92	0	88	28	22	24	24	2.00
19921125--19921177	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19922073--19922125	26	2.0	26	92	0	88	28	20	22	28	1.99
19923851--19923901	26	2.0	26	96	0	93	27	19	23	29	1.98
19924748--19924800	26	2.0	26	100	0	106	26	20	26	26	1.99
19925028--19925147	38	3.1	38	90	1	186	23	13	37	25	1.91
19925727--19925779	26	2.0	26	88	0	79	26	22	26	24	2.00
19926624--19926676	26	2.0	26	88	0	79	30	18	24	26	1.98
19927520--19927571	25	2.0	26	92	3	88	25	19	26	28	1.98
19919809--19930457	897	11.7	900	77	9	9508	25	24	24	25	2.00
19929323--19929374	26	2.0	26	92	3	88	26	19	25	28	1.98
19930219--19930271	26	2.0	26	96	0	97	26	18	26	28	1.98
19930913--19930965	26	2.0	26	89	7	81	28	16	24	30	1.97
19931778--19932464	158	4.3	158	87	2	887	21	29	28	21	1.98
19933788--19933840	26	2.0	26	96	0	97	28	20	24	26	1.99
19932853--19934163	649	2.0	638	82	7	1558	23	26	26	22	2.00
19935336--19935388	26	2.0	26	96	0	97	28	20	24	26	1.99
19936218--19936270	26	2.0	26	96	0	97	26	18	26	28	1.98
19935044--19938442	883	3.9	883	83	7	4254	25	24	25	25	2.00
19937970--19938022	26	2.0	26	92	0	88	26	18	24	30	1.98
19938673--19938725	26	2.0	26	85	0	70	28	16	22	32	1.96
19939582--19939634	26	2.0	26	100	0	106	26	20	26	26	1.99
19942221--19942273	26	2.0	26	92	0	88	26	18	28	26	1.98
19941360--19970531	903	32.4	899	78	8	25502	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19943995--19944047	26	2.0	26	96	0	97	26	20	28	24	1.99
19947462--19947514	26	2.0	26	92	0	88	28	18	24	28	1.98
19948366--19948418	26	2.0	26	92	0	88	30	20	22	26	1.98
19949276--19949328	26	2.0	26	96	0	97	26	22	24	26	2.00
19950168--19950220	26	2.0	26	96	0	97	28	20	24	26	1.99
19951962--19952014	26	2.0	26	96	0	97	26	18	26	28	1.98
19953764--19953816	26	2.0	26	92	0	88	30	20	22	26	1.98
19957377--19957428	26	2.0	25	88	3	77	28	19	23	28	1.98
19958250--19958638	158	2.5	157	84	1	474	23	30	28	17	1.97
19960142--19960194	26	2.0	26	92	0	88	26	20	26	26	1.99
19961951--19962298	184	1.9	184	86	1	491	22	28	27	20	1.99
19963026--19963078	26	2.0	26	88	0	79	26	18	26	28	1.98
19963913--19963964	26	2.0	26	92	0	86	26	15	26	30	1.96
19964805--19964862	25	2.3	26	82	8	77	29	18	24	27	1.98
19965706--19965758	26	2.0	26	92	0	88	28	22	24	24	2.00
19967516--19967568	26	2.0	26	96	0	97	26	18	26	28	1.98
19938451--19958485	903	22.5	897	85	4	23036	25	24	24	25	2.00
19968403--19968455	26	2.0	26	89	7	81	28	15	26	30	1.96
19970152--19970204	26	2.0	26	88	0	79	26	22	24	26	2.00
19970434--19970463	13	2.3	13	100	0	60	20	6	50	23	1.71
19971828--19973327	714	2.1	716	89	1	2276	26	23	24	26	2.00
19973431--19973483	26	2.0	26	92	0	88	26	24	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19974140--19974172	8	4.1	8	92	0	57	0	60	24	15	1.35
19972554--19976001	904	3.8	891	85	5	4382	25	24	24	25	2.00
19975243--19975295	26	2.0	26	92	0	88	24	24	20	30	1.99
19976829--19976880	26	2.0	26	92	3	88	28	25	19	26	1.98
19977728--19977780	26	2.0	26	100	0	106	26	26	20	26	1.99
19978427--19978801	159	2.4	158	84	1	464	19	30	27	21	1.98
19978775--19978827	26	2.0	26	88	0	79	30	26	15	28	1.96
19979844--19979871	9	3.1	9	100	0	56	0	10	75	14	1.06
19980568--19980620	26	2.0	26	92	0	88	32	24	15	28	1.95
19981672--19981702	12	2.6	12	100	0	62	12	29	19	38	1.89
19978801--19994092	878	17.0	872	78	9	13684	25	24	24	25	2.00
19984987--19985036	25	2.0	26	92	4	84	34	24	16	26	1.95
19984828--19985240	184	2.2	185	85	3	562	23	28	27	21	1.99
19985173--19985222	26	1.9	26	100	0	100	26	26	20	28	1.99
19987848--19987898	26	2.0	26	92	0	84	27	25	15	31	1.96
19988751--19988801	26	2.0	26	92	0	84	33	25	13	27	1.94
19986976--19994144	895	8.1	894	84	5	8785	25	24	23	25	2.00
19990495--19990547	26	2.0	26	96	0	97	26	28	20	24	1.99
19991390--19991442	26	2.0	26	96	0	97	24	26	22	26	2.00
19995131--19995180	26	2.0	25	88	4	73	28	26	18	28	1.98
19996009--19996061	26	2.0	26	96	0	97	28	26	18	26	1.98
19994250--19997165	889	3.3	887	85	2	3695	24	24	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19997356--19997385	8	3.8	8	90	0	51	0	63	26	10	1.26
19997553--19997605	26	2.0	26	92	0	88	28	22	20	28	1.99
19997738--19997790	26	2.0	26	100	0	106	30	26	16	26	1.97
19999545--19999597	26	2.0	26	100	0	106	26	26	20	26	1.99
19997579--20000475	901	3.2	896	85	3	3805	25	25	23	25	2.00
20002995--20003047	26	2.0	26	100	0	106	26	20	26	26	1.99
20004603--20004660	26	2.2	27	87	9	84	29	18	22	29	1.98
20005490--20005542	26	2.0	26	92	0	88	28	18	24	28	1.98
20005677--20005727	26	2.0	26	92	0	84	29	21	25	23	1.99
20005500--20005886	185	2.1	185	85	0	506	24	29	25	20	1.99
20007447--20007497	26	2.0	26	92	0	84	29	17	23	29	1.97
20008341--20008390	26	1.9	26	91	0	82	26	24	26	24	2.00
20005685--20010004	894	4.8	894	84	4	5185	25	24	24	25	2.00
20009213--20009291	26	3.0	26	96	0	149	27	20	25	26	1.99
20009265--20010816	774	2.0	779	87	3	2212	25	23	23	27	2.00
20010929--20011007	26	3.0	26	90	0	122	27	17	26	27	1.98
20011213--20012215	512	2.0	512	91	1	1627	26	18	23	31	1.97
20012364--20012413	26	1.9	26	95	0	91	28	18	28	26	1.98
20014000--20014052	26	2.0	26	100	0	106	26	20	26	26	1.99
20014173--20016363	717	3.1	713	90	2	3386	25	23	24	26	2.00
20016296--20016564	147	1.8	147	84	0	367	22	30	29	17	1.97
20017176--20017228	26	2.0	26	92	0	88	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20018080--20018132	26	2.0	26	92	0	88	30	18	24	26	1.98
20015577--20019842	853	4.9	885	84	5	5346	25	23	24	25	2.00
20018959--20019008	26	1.9	26	95	0	91	32	20	26	22	1.98
20021293--20021345	26	2.0	26	92	0	88	28	18	24	28	1.98
20020304--20022405	891	2.3	890	87	2	2985	24	24	25	25	2.00
20022195--20022247	26	2.0	26	92	0	88	28	18	24	28	1.98
20022379--20022431	26	2.0	26	92	0	88	26	18	24	30	1.98
20022166--20022590	184	2.3	184	84	5	529	21	25	28	25	1.99
20023869--20023921	26	2.0	26	96	0	97	28	20	24	26	1.99
20025356--20025408	26	2.0	26	96	0	97	32	20	20	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117