genome.fa.s101.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  104  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18258580--18258632	26	2.0	26	89	7	81	28	20	24	26	1.99
18259580--18259822	129	1.9	129	86	1	344	22	28	27	22	1.99
18260767--18263816	721	4.2	719	89	2	4420	26	23	23	26	2.00
18263792--18263842	26	2.0	26	92	0	84	31	13	25	29	1.94
18264694--18264746	26	2.0	26	92	0	88	26	16	26	30	1.97
18265583--18265635	26	2.0	26	88	0	79	26	16	24	32	1.97
18268045--18268097	26	2.0	26	96	0	97	28	20	24	26	1.99
18268654--18268706	26	2.0	26	96	0	97	26	15	26	32	1.95
18270362--18270414	26	2.0	26	85	0	70	26	20	24	28	1.99
18268841--18277548	893	9.9	892	84	5	10194	25	23	24	25	2.00
18271256--18271308	26	2.0	26	92	0	88	28	22	22	26	1.99
18272124--18272176	26	2.0	26	88	0	79	30	20	24	24	1.99
18273017--18273069	26	2.0	26	96	0	97	32	20	20	26	1.98
18275635--18275687	26	2.0	26	88	0	79	28	16	26	28	1.97
18276761--18276786	12	2.2	12	100	0	52	15	26	57	0	1.38
18277422--18277475	26	2.1	26	89	0	81	25	22	25	25	2.00
18279025--18279103	26	3.0	26	96	0	140	26	18	25	29	1.98
18279942--18280020	26	3.0	26	88	0	122	30	17	24	27	1.97
18280871--18280921	26	2.0	26	92	0	84	27	15	29	27	1.96
18277449--18283455	919	6.7	898	83	7	6946	25	23	24	25	2.00
18282615--18282667	26	2.0	26	92	0	88	26	16	26	30	1.97
18284996--18285048	26	2.0	26	92	0	88	28	16	26	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18283463--18285480	906	2.2	893	88	2	2971	25	23	24	27	2.00
18285554--18285606	26	2.0	26	89	7	81	28	16	28	26	1.97
18286459--18286509	26	2.0	26	96	0	93	27	17	27	27	1.98
18286806--18286866	32	1.9	32	100	0	122	29	13	11	45	1.78
18288540--18288590	26	2.0	26	84	3	68	25	7	19	47	1.76
18288977--18289029	26	2.0	26	96	0	97	28	20	26	24	1.99
18287383--18289944	869	2.9	874	84	5	3071	25	24	24	25	2.00
18289873--18289925	26	2.0	26	88	0	79	28	18	24	28	1.98
18292821--18292873	26	2.0	26	96	0	97	28	20	26	24	1.99
18291260--18293788	899	2.8	893	87	2	3613	25	24	24	25	2.00
18294307--18295784	718	2.1	713	88	1	2208	25	22	23	27	2.00
18296665--18296717	26	2.0	26	96	0	97	28	20	24	26	1.99
18295019--18301379	895	7.1	897	85	4	8160	25	23	24	25	2.00
18298454--18298506	26	2.0	26	96	0	97	30	18	22	28	1.98
18300243--18300295	26	2.0	26	96	0	97	26	18	26	28	1.98
18301138--18301190	26	2.0	26	96	0	97	26	18	26	28	1.98
18301164--18301537	158	2.4	157	86	4	495	22	29	28	18	1.98
18302180--18302232	26	2.0	26	96	0	97	28	20	26	24	1.99
18302228--18302632	205	2.0	201	85	2	542	21	30	30	16	1.96
18304168--18304220	26	2.0	26	96	0	97	26	15	26	32	1.95
18305074--18305126	26	2.0	26	96	0	97	26	15	26	32	1.95
18305100--18305468	159	2.3	159	87	0	515	21	27	29	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18305990--18306024	11	3.2	11	87	0	52	20	31	20	28	1.97
18306476--18306541	11	6.5	10	83	11	55	13	4	1	80	0.94
18306475--18306546	18	4.1	16	79	12	63	13	4	1	80	0.92
18306492--18306546	29	2.0	26	86	10	74	12	3	1	81	0.89
18306487--18306546	18	3.4	18	86	2	86	13	3	1	81	0.89
18306483--18306549	11	6.6	10	78	13	66	14	2	1	80	0.90
18306566--18306791	64	3.6	61	86	10	332	47	9	12	30	1.73
18306564--18306791	124	1.8	124	90	7	374	47	9	12	30	1.73
18309933--18309964	15	2.1	16	94	5	57	18	18	6	56	1.62
18310828--18310880	26	2.0	26	96	0	97	26	18	26	28	1.98
18311363--18311436	26	2.8	26	93	0	130	28	16	27	28	1.97
18310828--18311919	556	2.0	555	86	2	1539	23	21	25	28	1.99
18312281--18312333	26	2.0	26	100	0	106	26	20	26	26	1.99
18312462--18313921	716	2.0	718	88	1	2194	26	23	23	26	2.00
18316372--18316421	26	1.9	26	91	0	82	28	20	22	30	1.98
18319721--18319770	26	1.9	26	91	0	82	30	20	24	26	1.98
18320161--18320213	26	2.0	26	92	0	88	30	20	22	26	1.98
18321053--18321103	26	2.0	26	100	0	102	23	11	29	35	1.90
18319956--18323594	892	4.1	887	85	4	4622	25	24	23	25	2.00
18323647--18323699	26	2.0	26	96	0	97	26	18	26	28	1.98
18323634--18327086	848	3.9	893	72	13	2554	24	23	25	26	2.00
18327136--18327188	26	2.0	26	96	0	97	26	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18328029--18328081	26	2.0	26	92	0	88	28	16	22	32	1.96
18327110--18330032	892	3.3	883	84	4	3705	24	24	25	25	2.00
18329821--18329873	26	2.0	26	96	0	97	26	18	26	28	1.98
18330006--18330058	26	2.0	26	96	0	97	28	20	24	26	1.99
18329818--18330195	185	2.0	185	90	1	587	21	27	29	21	1.98
18330095--18330485	176	2.3	174	81	5	463	21	28	32	17	1.96
18331083--18331135	26	2.0	26	96	0	97	26	18	26	28	1.98
18331986--18332038	26	2.0	26	88	0	79	30	18	22	28	1.98
18330247--18349678	900	21.5	901	74	11	11168	25	23	24	25	2.00
18333719--18333771	26	2.0	26	100	0	106	26	20	26	26	1.99
18334619--18334671	26	2.0	26	92	0	88	24	18	28	28	1.98
18336386--18336438	26	2.0	26	96	0	97	26	18	26	28	1.98
18337269--18337321	26	2.0	26	92	0	88	26	16	26	30	1.97
18337595--18337647	26	2.0	26	96	0	97	28	20	24	26	1.99
18337158--18337809	326	2.0	326	85	1	885	22	27	26	22	1.99
18338478--18338530	26	2.0	26	92	0	88	26	16	26	30	1.97
18337511--18340029	871	2.9	885	86	4	3348	25	23	24	26	2.00
18340141--18340193	26	2.0	26	92	0	88	26	18	26	28	1.98
18341025--18341101	26	3.0	26	94	3	138	27	14	28	29	1.95
18341945--18341994	26	1.9	26	88	8	75	30	20	26	24	1.98
18342842--18342894	26	2.0	26	92	0	88	30	18	24	26	1.98
18343725--18343777	26	2.0	26	88	0	79	30	20	24	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18340036--18349678	887	10.7	888	82	7	10304	25	24	25	25	2.00
18344612--18344664	26	2.0	26	88	0	79	30	20	24	24	1.99
18346366--18346418	26	2.0	26	88	0	79	28	16	24	30	1.97
18346551--18346603	26	2.0	26	96	0	97	26	22	24	26	2.00
18346337--18346676	185	1.8	185	88	3	524	22	27	29	20	1.99
18349119--18349171	26	2.0	26	92	0	88	28	16	22	32	1.96
18349749--18349801	26	2.0	26	96	0	97	26	18	26	28	1.98
18351812--18351890	26	3.0	26	92	0	131	27	18	24	29	1.98
18353646--18355363	917	1.9	903	87	3	2296	25	23	24	26	2.00
18354409--18354479	26	2.7	26	100	0	142	30	18	23	26	1.97
18363587--18363639	26	2.0	26	92	0	88	26	20	24	28	1.99
18365362--18365412	26	2.0	26	96	0	93	33	17	21	27	1.96
18366274--18366326	26	2.0	26	96	0	97	26	18	26	28	1.98
18367175--18367227	26	2.0	26	100	0	106	26	20	26	26	1.99
18362713--18373451	899	12.0	898	85	4	13860	25	24	25	25	2.00
18370723--18370775	26	2.0	26	88	0	79	28	16	24	30	1.97
18371623--18371675	26	2.0	26	96	0	97	26	18	26	28	1.98
18372526--18372578	26	2.0	26	96	0	97	28	20	24	26	1.99
18372689--18374170	719	2.1	714	88	1	2243	26	23	23	26	2.00
18374144--18374196	26	2.0	26	88	0	79	26	18	24	30	1.98
18375675--18375727	26	2.0	26	92	0	88	28	18	24	28	1.98
18375786--18376536	396	1.9	384	86	4	1056	23	21	24	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18376336--18377320	507	1.9	506	90	0	1549	27	20	21	30	1.98
18378166--18378218	26	2.0	26	96	0	97	28	18	26	26	1.98
18379862--18382046	719	3.0	718	92	1	3491	25	22	23	27	2.00
18382020--18382072	26	2.0	26	88	0	79	28	16	24	30	1.97
18382921--18382973	26	2.0	26	100	0	106	26	20	26	26	1.99
18381273--18383837	901	2.9	896	88	2	3784	25	23	24	26	2.00
18384519--18384571	26	2.0	26	92	0	88	28	18	24	28	1.98
18385424--18385475	25	2.0	26	88	3	79	28	17	23	30	1.97
18383786--18386327	879	2.9	883	86	4	3508	25	23	24	25	2.00
18386701--18386753	26	2.0	26	96	0	97	24	16	26	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117