genome.fa.s101.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  110  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19065737--19065787	26	2.0	26	100	0	102	29	27	15	27	1.96
19066429--19066480	26	2.0	26	92	0	86	28	23	19	28	1.98
19067521--19067572	26	2.0	26	85	10	72	28	25	19	26	1.98
19068425--19068477	26	2.0	26	88	0	79	33	24	15	26	1.95
19066454--19074044	911	8.4	900	83	6	8829	25	24	24	25	2.00
19069336--19069414	26	3.0	26	98	0	149	27	26	18	26	1.98
19071148--19071201	26	2.1	26	89	0	81	24	22	24	29	1.99
19072902--19072954	26	2.0	26	92	0	88	28	26	16	28	1.97
19075397--19075449	26	2.0	26	92	0	88	24	24	22	28	2.00
19075841--19078267	708	3.4	704	86	5	3300	27	24	22	25	2.00
19078381--19078433	26	2.0	26	85	0	70	28	24	20	26	1.99
19077518--19089385	894	13.4	898	85	4	14759	25	24	24	25	2.00
19082872--19082923	26	2.0	26	88	0	77	32	19	17	30	1.95
19083778--19083830	26	2.0	26	88	0	79	26	24	20	28	1.99
19085518--19085569	26	2.0	25	96	3	95	25	26	21	26	1.99
19087253--19087305	26	2.0	26	96	0	97	28	26	18	26	1.98
19089034--19089086	26	2.0	26	96	0	97	26	24	20	28	1.99
19091184--19091236	26	2.0	26	100	0	106	26	26	20	26	1.99
19092788--19092839	26	2.0	26	96	0	95	28	25	19	26	1.98
19093673--19093725	26	2.0	26	96	0	97	26	24	20	28	1.99
19091925--19094466	885	2.8	893	86	3	3540	26	24	23	26	2.00
19093699--19095171	718	2.0	719	88	2	2190	27	23	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19095292--19095347	26	2.2	26	86	0	76	32	21	17	28	1.96
19095391--19097433	708	2.9	706	86	4	2757	27	23	22	26	2.00
19097466--19098999	709	2.2	698	83	6	1885	26	24	23	26	2.00
19098248--19102981	900	5.2	897	85	4	5848	25	25	24	25	2.00
19100709--19100740	8	4.0	8	95	0	55	0	65	25	9	1.22
19100921--19100973	26	2.0	26	100	0	106	26	26	20	26	1.99
19101125--19101157	13	2.5	13	95	0	57	15	21	33	30	1.94
19101836--19101887	26	2.0	26	85	3	70	26	25	19	28	1.98
19102735--19102787	26	2.0	26	96	0	97	32	26	15	26	1.95
19111793--19111845	26	2.0	26	85	0	70	28	24	18	28	1.98
19113817--19120352	884	7.5	876	77	10	5603	26	25	23	25	2.00
19115268--19117322	842	2.4	839	84	6	2505	26	24	23	25	2.00
19117644--19117696	26	2.0	26	92	0	88	26	22	20	30	1.98
19118545--19118595	26	2.0	26	96	0	93	27	27	15	29	1.96
19117320--19120352	900	3.4	894	86	3	4117	26	25	23	24	2.00
19119443--19119494	26	2.0	26	100	0	104	30	26	15	26	1.96
19121105--19121157	26	2.0	26	92	0	88	32	24	15	28	1.95
19121583--19121641	26	2.2	27	81	3	66	61	10	6	22	1.51
19122006--19122058	26	2.0	26	92	0	88	28	24	18	28	1.98
19120356--19122785	906	2.7	895	87	3	3415	26	24	23	25	2.00
19122032--19123498	719	2.0	718	88	3	2148	26	24	23	25	2.00
19123604--19126556	710	4.1	721	88	3	4188	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19125869--19128829	898	3.3	878	84	4	3726	25	24	24	25	2.00
19128435--19128487	26	2.0	26	96	0	97	26	24	20	28	1.99
19129712--19129764	26	2.0	26	88	0	79	30	24	16	28	1.97
19129014--19131012	898	2.2	889	89	3	2989	25	25	23	25	2.00
19132134--19132186	26	2.0	26	92	0	88	28	22	20	28	1.99
19132295--19135008	717	3.8	716	91	2	4038	26	22	23	26	2.00
19134274--19138573	884	4.9	887	74	11	3524	25	24	23	25	2.00
19136874--19136926	26	2.0	26	92	0	88	26	26	20	26	1.99
19137773--19137825	26	2.0	26	88	0	79	24	22	22	30	1.99
19136482--19138566	899	2.3	897	87	2	2945	26	24	23	25	2.00
19137799--19139291	718	2.1	718	88	2	2183	27	23	23	25	2.00
19139392--19139473	26	3.2	26	96	0	146	29	24	18	28	1.98
19140797--19140849	26	2.0	26	85	7	72	24	22	24	28	2.00
19141799--19141831	11	3.0	11	90	0	57	18	27	33	21	1.96
19140776--19143637	893	3.2	890	83	6	3622	25	24	24	25	2.00
19143473--19143524	26	2.0	26	92	0	86	28	25	17	28	1.97
19143795--19149854	864	6.9	868	83	6	7166	25	24	23	25	2.00
19146400--19146452	26	2.0	26	100	0	106	30	26	16	26	1.97
19148143--19148195	26	2.0	26	96	0	97	28	24	20	26	1.99
19149457--19150241	398	2.0	400	84	6	1031	29	25	21	22	1.99
19152087--19152139	26	2.0	26	92	0	88	24	24	22	28	2.00
19153554--19153606	26	2.0	26	100	0	106	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19155316--19155368	26	2.0	26	92	0	88	30	26	16	26	1.97
19156217--19156269	26	2.0	26	96	0	97	28	24	20	26	1.99
19152698--19157870	901	5.8	894	84	6	6374	26	24	23	25	2.00
19157088--19157138	26	2.0	26	96	0	93	29	25	17	27	1.98
19157112--19159450	724	3.2	717	85	4	3132	26	23	23	26	2.00
19157112--19161424	719	6.1	692	80	8	3698	26	23	23	26	2.00
19162407--19162459	26	2.0	26	92	0	88	26	26	18	28	1.98
19161530--19175483	903	15.8	901	83	6	16408	25	24	23	25	2.00
19163310--19163362	26	2.0	26	96	0	97	26	24	20	28	1.99
19166764--19166815	25	2.0	26	96	3	97	26	25	21	26	1.99
19167655--19167708	26	2.1	26	92	0	90	24	22	24	29	1.99
19171206--19171258	26	2.0	26	88	0	79	28	26	18	26	1.98
19172105--19172157	26	2.0	26	88	0	79	28	24	16	30	1.97
19172995--19173047	26	2.0	26	96	0	97	28	26	18	26	1.98
19173898--19173950	26	2.0	26	92	0	88	28	26	20	24	1.99
19174764--19174816	26	2.0	26	88	0	79	28	24	16	30	1.97
19176464--19176516	26	2.0	26	92	0	88	22	26	22	28	1.99
19177205--19177552	157	2.2	159	86	1	475	19	26	30	23	1.98
19177526--19177578	26	2.0	26	96	0	97	26	24	20	28	1.99
19178286--19178337	26	2.0	26	88	0	77	28	23	17	30	1.97
19179877--19179929	26	2.0	26	92	0	88	26	24	20	28	1.99
19181289--19181322	4	8.5	4	93	0	59	0	73	23	2	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19179903--19184328	711	6.0	720	75	10	3784	25	24	23	25	2.00
19182225--19182277	26	2.0	26	96	0	97	24	26	20	28	1.99
19185343--19185402	26	2.4	26	88	5	88	26	26	20	26	1.99
19186234--19186286	26	2.0	26	88	0	79	26	20	20	32	1.98
19183583--19187911	900	4.8	893	84	5	5444	25	24	24	25	2.00
19187138--19187190	26	2.0	26	100	0	106	26	26	20	26	1.99
19187322--19188497	587	2.0	583	89	2	1784	29	23	21	26	1.99
19189389--19189451	33	1.9	33	86	0	90	28	20	33	17	1.95
19189559--19190723	580	2.0	581	88	1	1744	29	22	21	26	1.99
19190854--19190906	26	2.0	26	92	0	88	28	22	22	26	1.99
19193222--19193265	11	4.0	11	90	0	70	22	27	31	18	1.97
19195216--19199545	903	4.9	894	83	6	5224	25	24	23	25	2.00
19197033--19197085	26	2.0	26	100	0	106	26	26	20	26	1.99
19197900--19197952	26	2.0	26	92	0	88	28	24	18	28	1.98
19200343--19201838	708	2.1	705	89	2	2277	27	24	22	25	2.00
19201942--19201994	26	2.0	26	88	0	79	28	20	20	30	1.98
19201057--19205138	871	4.6	869	83	6	4606	26	24	23	25	2.00
19203720--19203772	26	2.0	26	85	0	70	22	24	22	30	1.99
19204600--19204652	26	2.0	26	96	0	97	26	26	18	28	1.98
19205415--19205493	26	3.0	26	98	0	149	27	26	18	26	1.98
19207025--19207077	26	2.0	26	88	0	79	24	22	22	30	1.99
19207928--19207977	26	1.9	26	100	0	100	28	28	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19208821--19208872	26	2.0	25	88	3	77	28	23	19	28	1.98
19209719--19209771	26	2.0	26	92	0	88	28	24	18	28	1.98
19206174--19213048	897	7.7	899	85	3	8872	26	24	23	25	2.00
19211087--19211143	26	2.2	26	83	0	69	59	12	3	24	1.48
19211505--19211557	26	2.0	26	100	0	106	26	26	20	26	1.99
19212411--19212463	26	2.0	26	96	0	97	26	26	18	28	1.98
19212509--19213580	532	2.0	534	91	0	1716	29	20	22	27	1.99
19215576--19215628	26	2.0	26	96	0	97	28	26	18	26	1.98
19217097--19217129	11	3.0	11	90	0	57	24	36	30	9	1.86
19216196--19224677	902	9.6	869	86	4	10649	26	24	23	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117