genome.fa.s101.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  68  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12575784--12575843	17	3.6	17	70	17	54	46	1	0	51	1.10
12576034--12576073	18	2.2	18	86	8	55	52	0	2	45	1.14
12576029--12576119	20	4.6	20	71	15	64	54	0	1	43	1.07
12576010--12576105	48	2.0	48	80	8	106	55	1	1	42	1.13
12576175--12576233	24	2.5	23	80	5	55	55	0	0	44	0.99
12595603--12595846	108	2.3	108	97	0	461	45	17	13	22	1.84
12595797--12595868	26	2.8	26	86	0	99	41	18	15	25	1.89
12598564--12598620	24	2.4	24	90	0	87	63	14	3	19	1.44
12601366--12601410	21	2.1	22	87	4	65	62	0	0	37	0.96
12601357--12601414	30	1.9	30	82	6	73	60	0	1	37	1.07
12602902--12602950	19	2.6	19	78	15	57	59	8	2	30	1.38
12603008--12603058	3	17.0	3	95	0	93	64	1	0	33	1.05
12604035--12604106	13	5.3	13	74	18	58	70	6	1	20	1.18
12612110--12612138	2	14.5	2	100	0	58	51	0	0	48	1.00
12614626--12614676	21	2.4	21	83	9	59	45	3	9	41	1.56
12624995--12625023	2	14.5	2	100	0	58	51	48	0	0	1.00
12625477--12625507	15	2.1	15	100	0	62	6	25	25	41	1.79
12627224--12627336	29	3.8	29	78	10	122	53	0	4	40	1.27
12627224--12627318	30	3.2	30	83	8	131	50	1	5	43	1.31
12627224--12627336	59	1.9	59	85	3	156	53	0	4	40	1.27
12627758--12627796	20	2.0	20	84	0	51	43	5	0	51	1.24
12628205--12628272	30	2.3	30	81	0	82	36	4	7	51	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12630866--12630904	18	2.1	19	95	4	71	12	33	30	23	1.92
12630870--12630912	18	2.4	18	88	0	68	13	30	32	23	1.93
12631046--12631075	6	5.0	6	100	0	60	33	33	16	16	1.92
12634484--12634512	2	15.0	2	92	7	51	51	0	0	48	1.00
12634679--12634719	21	1.9	22	85	5	57	65	7	0	26	1.18
12637405--12637467	2	34.0	2	75	20	57	47	3	1	47	1.27
12638261--12638307	24	1.9	25	86	4	69	21	4	8	65	1.37
12639152--12639252	38	2.5	43	75	10	106	51	8	9	29	1.65
12639153--12639237	38	2.2	38	83	4	109	51	8	9	30	1.63
12642058--12642091	17	2.0	17	88	0	50	14	0	8	76	1.01
12644566--12644661	38	2.3	45	82	12	107	41	8	5	44	1.57
12644602--12644664	19	3.3	19	72	0	63	42	7	3	46	1.49
12649733--12649817	41	2.1	41	86	2	118	42	17	7	32	1.76
12649733--12649827	41	2.3	41	83	5	113	43	18	7	30	1.78
12649915--12650024	41	2.7	40	77	15	118	36	8	11	43	1.71
12650175--12650248	22	3.4	22	80	0	94	35	22	10	31	1.89
12650173--12650263	44	2.1	44	85	4	121	35	20	10	32	1.88
12650298--12650358	22	2.8	22	74	0	59	34	26	8	31	1.86
12652526--12652573	21	2.3	21	85	7	62	47	18	6	27	1.72
12652608--12652655	21	2.3	21	85	0	69	43	27	4	25	1.72
12652682--12652711	14	2.2	13	94	5	51	50	26	0	23	1.50
12652588--12652810	119	1.9	119	91	0	365	43	29	3	23	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12652727--12652812	21	4.2	21	76	8	88	45	33	2	18	1.62
12652782--12652871	38	2.4	38	83	7	121	42	38	2	16	1.61
12652782--12652854	19	3.8	19	90	0	119	41	38	0	20	1.53
12654096--12654173	36	2.2	37	88	4	115	43	1	8	46	1.43
12654192--12654319	52	2.5	51	82	3	157	46	6	11	35	1.66
12654543--12654666	47	2.6	49	81	10	148	45	5	13	35	1.68
12654543--12654668	50	2.6	46	81	9	146	44	5	13	36	1.67
12662800--12662851	22	2.5	21	81	9	63	63	9	9	17	1.50
12668036--12668068	16	2.0	17	88	5	50	42	6	24	27	1.78
12668897--12669025	60	2.2	60	95	0	231	24	14	17	43	1.87
12670485--12670551	34	2.0	34	93	0	116	22	19	14	43	1.87
12671583--12671623	12	3.6	12	83	9	59	34	9	0	56	1.32
12671896--12671928	8	4.0	8	96	4	57	27	0	0	72	0.85
12671895--12671965	23	3.0	23	77	4	61	25	1	2	70	1.09
12671951--12672114	4	41.5	4	67	18	51	31	3	2	62	1.25
12672006--12672103	42	2.3	43	85	1	119	33	4	2	60	1.27
12671959--12672084	22	6.2	20	69	18	75	32	3	2	61	1.27
12672028--12672096	22	3.2	21	78	8	77	33	4	1	60	1.25
12672057--12672172	21	5.6	20	75	6	79	27	4	2	65	1.24
12672066--12672189	42	3.0	41	80	9	126	25	5	3	66	1.29
12673101--12673315	57	3.7	57	84	9	283	43	6	13	36	1.70
12673101--12673312	118	1.8	116	89	7	338	44	6	13	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12673101--12673319	58	3.8	58	84	7	293	42	7	13	36	1.72
12675433--12675485	24	2.2	25	82	3	63	15	5	3	75	1.13
12675515--12675544	3	9.7	3	92	7	51	66	0	0	33	0.92
12675893--12675934	18	2.4	19	88	11	63	59	0	0	40	0.97
12676166--12676200	17	2.0	18	88	5	54	77	11	0	11	1.00
12688223--12688303	34	2.4	34	87	0	108	30	18	17	33	1.94
12688322--12688468	77	1.9	77	83	5	190	30	14	16	38	1.89
12688243--12688466	120	1.9	120	81	3	272	30	16	17	35	1.92
12688319--12688491	77	2.2	76	78	7	188	28	15	16	39	1.89
12688772--12688809	3	12.7	3	94	0	67	31	2	0	65	1.06
12689849--12689874	3	8.7	3	100	0	52	69	0	0	30	0.89
12690260--12690304	19	2.4	19	81	7	56	75	2	2	20	1.01
12690827--12690855	3	10.0	3	92	7	51	65	0	0	34	0.93
12695453--12695500	8	6.1	8	87	4	71	75	0	8	16	1.04
12699719--12699911	71	2.7	72	82	3	228	38	12	4	43	1.64
12703933--12703971	14	2.8	14	96	0	69	20	7	12	58	1.58
12710204--12710266	32	2.0	32	90	0	99	34	1	1	61	1.15
12713893--12714043	22	6.8	22	70	8	108	30	4	13	50	1.62
12714038--12714094	30	1.9	30	85	0	78	36	8	8	45	1.66
12718161--12718193	15	2.3	15	89	5	50	33	9	0	57	1.30
12718676--12718765	46	2.0	46	90	0	144	40	6	2	51	1.41
12719305--12719342	19	2.0	19	85	10	51	63	5	2	28	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12721574--12721599	1	26.0	1	100	0	52	0	0	0	100	0.00
12723040--12723070	2	15.5	2	100	0	62	51	0	0	48	1.00
12724160--12724187	2	14.0	2	100	0	56	50	0	0	50	1.00
12724893--12724936	20	2.2	20	91	0	70	34	22	15	27	1.95
12724922--12724967	20	2.3	20	85	7	58	23	15	23	36	1.93
12725220--12725270	17	3.0	16	83	11	57	33	1	0	64	1.05
12725221--12725269	18	2.8	18	84	12	66	32	2	0	65	1.04
12725221--12725277	9	6.6	8	80	13	51	31	1	0	66	1.02
12725770--12725823	19	2.8	20	78	15	60	70	1	1	25	1.07
12725777--12725826	20	2.5	20	83	3	66	70	2	2	26	1.09
12726086--12726131	24	2.0	24	91	4	76	50	0	4	45	1.21
12726148--12726194	21	2.2	21	77	7	51	21	0	8	70	1.14
12731613--12731647	3	11.7	3	100	0	70	34	0	0	65	0.93
12735112--12735153	2	22.5	2	86	13	63	45	0	0	54	0.99
12735306--12735333	2	14.0	2	100	0	56	50	0	0	50	1.00
12736065--12736137	24	3.0	24	78	4	92	49	2	1	46	1.24
12736745--12736776	15	2.1	16	88	11	50	43	0	6	50	1.27
12738084--12738124	21	2.0	21	90	0	64	21	26	12	39	1.89
12739153--12739197	13	3.5	13	81	3	56	42	0	0	57	0.98
12739478--12739507	2	15.0	2	100	0	60	50	0	0	50	1.00
12739552--12739666	24	4.8	24	65	23	73	48	1	0	48	1.17
12739562--12739591	15	2.1	14	93	6	51	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12739967--12740025	22	2.7	23	78	17	63	61	0	1	37	1.07
12740196--12740227	15	2.1	16	88	11	50	43	0	6	50	1.27
12741698--12741761	17	3.8	17	73	20	62	75	6	3	15	1.14
12741708--12741742	10	3.5	10	88	11	54	77	2	0	20	0.90
12741772--12741809	19	2.0	19	100	0	76	47	5	15	31	1.68
12742434--12742459	10	2.6	10	100	0	52	30	19	19	30	1.96
12747233--12747267	3	11.7	3	100	0	70	68	0	0	31	0.90
12747541--12747593	16	3.5	16	71	19	51	62	0	1	35	1.06
12750560--12750648	34	2.6	34	90	0	133	34	8	16	39	1.80
12751672--12751769	33	2.9	34	84	6	119	36	9	17	36	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117