genome.fa.s101.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  84  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15231401--15231458	28	2.0	29	86	3	82	39	1	27	31	1.67
15231695--15231730	18	2.0	18	100	0	72	22	27	11	38	1.88
15231990--15232015	12	2.2	12	100	0	52	34	15	7	42	1.75
15236329--15236365	2	18.5	2	100	0	74	48	0	51	0	1.00
15240930--15240959	2	15.0	2	100	0	60	50	0	0	50	1.00
15242126--15242153	2	14.0	2	100	0	56	50	0	0	50	1.00
15246116--15246146	2	15.5	2	100	0	62	51	0	0	48	1.00
15246764--15246797	10	3.4	10	83	0	50	29	20	50	0	1.49
15247154--15247194	16	2.4	18	80	15	52	4	12	4	78	1.07
15249334--15249387	25	2.2	25	86	0	72	48	14	1	35	1.55
15249348--15249405	25	2.3	25	85	8	73	48	13	1	36	1.53
15250902--15250942	8	5.0	8	82	5	55	14	4	0	80	0.87
15252460--15252519	29	2.1	28	81	12	68	10	15	3	71	1.25
15252487--15252533	17	2.8	17	80	9	51	8	8	4	78	1.07
15252505--15252545	16	2.5	17	84	7	50	17	0	2	80	0.82
15259857--15259917	31	2.0	31	87	3	88	50	8	22	18	1.73
15260119--15260171	25	2.1	25	82	6	63	3	18	1	75	1.05
15261992--15262020	2	14.5	2	100	0	58	51	0	0	48	1.00
15262624--15262666	21	2.0	21	100	0	86	39	27	4	27	1.76
15267113--15267164	22	2.4	23	75	12	56	69	1	1	26	1.10
15268107--15268326	10	23.4	9	70	14	79	55	2	2	39	1.29
15268179--15268211	11	3.1	11	82	8	50	36	6	0	57	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15268214--15268268	17	3.3	16	80	14	67	67	7	0	25	1.16
15268213--15268269	8	6.8	8	76	11	60	68	7	0	24	1.14
15268239--15268318	27	2.9	27	81	1	97	61	2	0	36	1.10
15268280--15268337	19	3.0	19	82	2	80	63	0	0	36	0.94
15268567--15268682	9	11.9	9	73	18	90	37	0	10	50	1.42
15268567--15268681	20	5.8	19	74	12	99	37	0	10	51	1.42
15269391--15272711	698	4.7	696	74	10	1661	51	5	10	32	1.59
15269417--15270612	465	2.6	469	78	6	1014	52	5	9	32	1.56
15271130--15271182	21	2.5	21	84	0	61	49	5	11	33	1.62
15269391--15272117	468	5.8	463	74	10	1259	52	5	10	32	1.59
15268914--15272716	236	16.3	231	72	10	2076	51	5	9	32	1.59
15268918--15272716	464	8.1	459	73	10	1648	51	5	9	32	1.59
15272730--15272764	2	17.5	2	100	0	70	48	0	0	51	1.00
15273424--15273461	20	2.0	19	85	10	51	65	0	7	26	1.19
15277881--15278287	143	2.8	143	77	3	372	34	13	12	40	1.81
15279472--15279540	36	1.9	36	87	0	102	42	1	27	28	1.64
15280686--15280734	25	1.9	26	88	12	75	71	6	0	22	1.08
15282546--15282607	25	2.5	24	78	16	74	72	0	3	24	0.99
15282547--15282620	7	10.9	7	75	17	50	72	0	2	24	0.97
15282546--15282620	26	2.9	25	77	18	75	73	0	2	24	0.96
15283143--15283196	16	3.2	17	85	12	76	72	0	3	24	1.01
15283156--15283197	9	4.7	9	82	11	59	76	0	2	21	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15283145--15283225	27	3.0	26	80	8	83	70	0	3	25	1.04
15290009--15290157	34	4.4	34	77	1	138	20	14	16	48	1.81
15290218--15290282	34	1.9	34	83	0	85	20	18	12	49	1.79
15290239--15290315	33	2.3	33	82	6	84	22	12	12	51	1.74
15290328--15290402	33	2.3	32	79	6	87	28	21	6	44	1.77
15292006--15292120	7	17.7	7	73	15	59	23	1	33	40	1.65
15292006--15292139	13	10.3	13	67	16	55	23	1	32	41	1.64
15293055--15293111	10	5.6	10	78	17	64	57	7	19	15	1.60
15296496--15296618	25	4.9	25	73	3	86	46	30	1	21	1.61
15296545--15296619	13	5.9	13	70	17	68	49	29	0	21	1.50
15296657--15296717	25	2.4	25	75	5	61	45	36	0	18	1.49
15296708--15296803	29	3.3	29	98	0	183	43	28	8	19	1.80
15296795--15296841	19	2.5	19	82	3	60	42	34	6	17	1.74
15297099--15297158	19	3.2	19	82	0	75	43	38	1	16	1.58
15298415--15298506	36	2.5	37	84	3	116	40	8	17	33	1.80
15298415--15298517	36	2.8	37	82	5	104	38	9	17	33	1.83
15303930--15303970	12	3.4	12	89	0	64	17	4	17	60	1.52
15304920--15304982	6	10.8	6	89	1	67	69	14	0	15	1.18
15304925--15304973	9	5.6	9	82	2	55	69	18	0	12	1.19
15305375--15305429	27	2.1	26	82	3	65	52	0	14	32	1.42
15306923--15306956	16	2.1	16	94	0	59	50	0	0	50	1.00
15310300--15310334	7	5.0	7	86	13	54	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15310741--15310772	2	16.0	2	100	0	64	50	0	0	50	1.00
15312982--15313095	57	2.0	56	83	8	142	35	11	17	35	1.86
15319214--15319245	12	2.8	11	90	9	55	18	12	9	59	1.59
15321462--15321499	18	2.1	19	85	9	53	71	7	7	13	1.31
15322617--15322807	64	3.0	64	76	6	206	24	8	19	47	1.78
15322788--15322870	43	2.0	43	83	7	107	32	19	14	33	1.92
15323250--15323651	94	4.3	93	73	9	275	24	18	16	40	1.90
15323871--15323904	15	2.2	15	89	5	50	85	0	14	0	0.60
15323868--15323908	16	2.6	15	85	11	55	85	0	14	0	0.60
15324359--15324406	25	1.9	25	91	0	78	35	2	2	60	1.20
15324381--15324828	144	3.1	143	76	9	424	35	12	10	42	1.77
15325830--15325890	24	2.5	24	86	0	86	49	32	0	18	1.48
15325900--15326029	20	6.6	20	76	4	120	47	33	2	16	1.59
15325877--15326035	40	4.0	40	77	10	148	47	31	2	18	1.62
15325884--15326029	60	2.4	59	77	6	141	47	32	2	17	1.59
15327497--15327552	17	3.2	17	87	7	76	1	17	0	80	0.80
15327499--15327552	24	2.2	25	90	9	85	1	18	0	79	0.82
15327497--15327556	18	3.5	17	80	10	68	3	16	0	80	0.85
15328469--15328513	18	2.4	18	85	10	56	15	8	0	75	1.03
15328525--15328575	18	3.1	18	72	21	65	35	1	0	62	1.06
15328537--15328563	14	1.9	14	100	0	54	22	3	0	74	0.98
15328655--15328721	29	2.3	29	82	7	73	41	0	1	56	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15333932--15333973	20	2.0	20	86	4	57	64	7	9	19	1.46
15334090--15334295	49	4.2	48	75	10	184	35	14	10	39	1.80
15334227--15334484	141	1.8	141	81	6	326	35	12	9	42	1.75
15334437--15334527	46	2.0	46	82	4	112	40	9	8	40	1.69
15337538--15337568	2	15.5	2	100	0	62	51	0	0	48	1.00
15342846--15342870	13	1.9	13	100	0	50	40	36	0	24	1.55
15350506--15350575	26	2.6	26	77	20	65	22	0	10	67	1.20
15351420--15351499	11	7.4	10	72	18	54	10	5	5	80	1.02
15351434--15351486	19	2.7	20	85	8	65	9	3	5	81	0.98
15351420--15351499	16	5.2	15	77	19	67	10	5	5	80	1.02
15351489--15351534	20	2.3	20	100	0	92	23	4	4	67	1.27
15351525--15351564	19	2.2	19	90	4	64	22	7	7	62	1.47
15353478--15353536	6	9.3	6	75	17	57	15	0	8	76	1.01
15353483--15353536	19	2.7	19	81	16	65	14	0	9	75	1.03
15354315--15354356	14	3.1	14	80	16	52	21	0	2	76	0.90
15360248--15360304	21	2.5	23	80	11	64	3	24	1	70	1.13
15362751--15362793	21	2.0	21	100	0	86	39	27	4	27	1.76
15366673--15366716	23	1.9	23	86	9	63	47	0	6	45	1.29
15368450--15368542	9	10.0	9	73	4	60	47	3	5	44	1.42
15368468--15368519	20	2.6	19	82	8	59	55	1	7	34	1.39
15368545--15368631	8	10.8	8	71	14	54	63	6	1	28	1.28
15368745--15368808	29	2.3	29	84	10	80	31	0	1	67	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15368804--15368843	16	2.4	16	95	4	71	30	5	0	65	1.14
15368793--15368842	16	3.1	17	86	13	70	32	4	0	64	1.12
15368821--15368866	24	1.9	24	81	0	56	26	2	2	69	1.11
15368923--15369004	9	8.7	9	75	15	67	36	1	8	53	1.39
15368922--15369003	19	4.2	20	78	10	98	35	1	8	54	1.39
15369706--15372100	233	10.4	225	70	15	998	52	5	10	32	1.59
15369244--15371306	231	8.9	229	72	12	950	52	6	9	31	1.58
15370888--15370934	24	1.9	25	86	4	69	42	0	4	53	1.20
15372176--15372581	199	2.0	199	96	0	751	52	6	7	33	1.54
15372642--15372685	21	2.1	21	87	8	63	50	2	0	47	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117