genome.fa.s101.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  46  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8511732--8511769	2	19.0	2	100	0	76	50	0	0	50	1.00
8512544--8512584	20	2.0	21	90	4	66	41	0	0	58	0.98
8512544--8512584	21	2.0	21	90	4	66	41	0	0	58	0.98
8512922--8512962	16	2.7	15	92	3	64	19	0	0	80	0.71
8512925--8512958	7	4.6	7	86	13	50	17	0	0	82	0.67
8512919--8512962	8	5.5	8	81	8	54	20	0	0	79	0.73
8513651--8513716	24	2.6	25	79	11	73	56	0	1	42	1.08
8522839--8522876	20	1.9	20	88	0	58	31	10	15	42	1.81
8524721--8524785	24	2.7	23	75	17	62	35	7	1	55	1.38
8527114--8527141	3	9.3	3	100	0	56	32	0	0	67	0.91
8528007--8528067	20	3.1	19	77	17	63	21	3	0	75	0.94
8528229--8528263	14	2.5	15	86	13	56	65	0	0	34	0.93
8528271--8528320	26	2.0	25	84	11	66	78	4	4	14	1.05
8528277--8528318	14	3.2	13	80	16	50	78	2	2	16	0.96
8537554--8537584	15	2.1	15	93	0	53	45	6	29	19	1.75
8540118--8540334	59	3.7	59	88	4	298	37	12	6	43	1.68
8540118--8540334	120	1.8	116	88	7	330	37	12	6	43	1.68
8540350--8540438	5	16.8	5	86	11	101	79	0	2	17	0.83
8540350--8540438	6	15.5	6	85	12	100	79	0	2	17	0.83
8540350--8540438	17	5.2	17	88	9	119	79	0	2	17	0.83
8540492--8540522	4	7.5	4	92	7	53	77	0	0	22	0.77
8540464--8540522	13	4.5	13	80	19	61	72	1	0	25	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8540998--8541041	24	1.9	22	86	9	61	63	11	2	22	1.38
8541272--8541312	14	3.0	14	89	10	59	80	0	19	0	0.71
8541326--8541446	3	37.3	3	71	19	52	63	1	3	31	1.20
8541310--8541454	4	37.8	4	69	15	60	66	2	3	28	1.19
8541311--8541454	22	6.5	21	74	14	96	65	2	3	28	1.20
8541341--8541453	46	2.4	48	77	15	112	66	1	2	29	1.15
8541311--8541446	25	5.6	25	76	14	135	64	2	3	29	1.22
8542220--8542310	39	2.3	39	78	10	96	23	2	4	70	1.16
8542330--8542376	19	2.3	20	83	16	62	63	4	4	27	1.31
8545318--8545393	22	3.3	23	81	7	93	34	2	1	61	1.18
8545350--8545471	26	4.6	28	72	21	118	36	4	2	57	1.31
8545360--8545429	28	2.4	29	83	7	88	35	4	2	57	1.33
8546281--8546306	11	2.4	11	100	0	52	15	0	0	84	0.62
8546272--8546305	16	2.1	17	94	5	61	17	2	0	79	0.86
8546397--8546457	14	4.3	14	72	12	61	40	6	6	45	1.56
8546456--8546545	30	3.0	30	61	23	71	42	5	14	37	1.69
8546424--8546606	57	3.1	57	80	13	203	40	5	14	39	1.69
8556372--8556918	273	2.0	272	97	0	1031	38	15	17	28	1.90
8557302--8557336	17	2.2	15	90	10	52	82	2	11	2	0.88
8558360--8558624	42	6.2	43	81	9	317	21	13	21	43	1.87
8558360--8558624	86	3.1	85	89	3	397	21	13	21	43	1.87
8558360--8558707	172	2.0	170	82	6	416	22	14	21	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8558901--8559008	4	27.5	4	68	17	50	27	3	2	65	1.23
8558951--8559003	20	2.7	20	87	0	88	35	1	0	62	1.06
8558948--8559084	24	5.8	24	78	16	137	35	4	1	59	1.27
8558948--8559086	48	3.1	45	82	14	155	34	4	1	59	1.26
8558948--8559075	46	2.8	47	80	13	144	35	3	1	59	1.25
8563645--8563673	15	1.9	15	100	0	58	48	13	20	17	1.81
8567532--8567573	2	21.0	2	100	0	84	0	50	0	50	1.00
8569658--8569720	31	2.0	31	93	0	108	57	4	14	23	1.56
8569973--8570015	22	2.0	21	82	13	52	53	4	27	13	1.60
8572343--8572398	25	2.2	25	90	0	85	33	8	3	53	1.49
8572900--8572947	2	24.5	2	87	4	71	47	0	2	50	1.12
8574261--8574293	3	11.0	3	100	0	66	66	0	0	33	0.92
8575982--8576017	12	2.9	12	91	4	54	83	0	5	11	0.80
8576277--8576309	2	16.5	2	100	0	66	0	48	0	51	1.00
8581861--8581916	16	3.4	16	74	11	51	26	0	3	69	1.04
8582984--8583043	21	2.9	20	82	5	66	18	5	8	68	1.34
8583214--8583551	48	7.0	49	79	8	318	37	21	12	27	1.90
8583275--8583542	144	1.9	144	87	0	401	37	22	13	26	1.91
8584274--8584307	9	3.8	9	88	0	50	5	11	0	82	0.83
8597228--8597312	32	2.7	32	75	12	86	42	7	4	45	1.52
8597758--8597790	2	16.5	2	93	0	57	48	3	0	48	1.17
8597872--8597920	23	2.2	22	81	3	53	44	8	10	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8600651--8601056	144	2.8	142	79	4	413	34	11	7	46	1.69
8617670--8617708	13	2.9	14	85	7	55	41	0	0	58	0.98
8619605--8619698	24	3.9	24	73	17	88	56	1	6	36	1.32
8619586--8619733	10	14.8	10	68	11	63	59	1	4	34	1.27
8619667--8619733	20	3.4	20	85	2	91	62	1	2	32	1.19
8619933--8620465	256	2.1	261	84	6	692	42	21	13	22	1.88
8619953--8620450	128	3.9	128	81	7	587	42	20	14	22	1.88
8619933--8620465	44	12.3	43	80	8	523	42	21	13	22	1.88
8620024--8620487	172	2.7	169	84	7	505	42	21	14	22	1.88
8621508--8621543	9	4.0	9	96	0	63	0	13	0	86	0.58
8621494--8621542	9	5.2	9	92	5	62	2	18	0	79	0.83
8632079--8632103	13	1.9	13	100	0	50	64	4	0	32	1.12
8632150--8632187	3	12.7	3	86	10	51	71	0	2	26	1.00
8632149--8632188	21	1.9	21	100	0	80	72	0	2	25	0.97
8632927--8633101	3	53.3	3	72	18	86	60	1	3	34	1.21
8632926--8633101	48	3.5	47	68	22	126	60	1	3	34	1.21
8632970--8633115	20	6.7	20	67	23	64	58	2	4	34	1.28
8646633--8646673	20	1.9	23	85	14	61	41	0	0	58	0.98
8647364--8647460	49	2.0	49	95	2	178	47	7	12	32	1.68
8649814--8649861	23	2.1	23	96	0	87	29	14	22	33	1.94
8650361--8650409	18	2.7	18	76	17	57	28	6	2	63	1.30
8654773--8654817	21	2.1	21	91	0	72	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8666429--8666473	19	2.5	17	79	13	54	51	0	0	48	1.00
8668603--8668651	21	2.3	20	76	10	53	48	2	8	40	1.44
8669369--8669413	23	1.9	24	86	4	65	46	2	2	48	1.26
8669350--8669413	32	2.0	33	81	3	76	50	1	1	46	1.20
8669509--8669543	14	2.6	14	90	4	54	22	0	0	77	0.78
8669733--8669810	20	3.9	20	84	0	102	44	23	8	23	1.81
8669914--8669986	32	2.4	30	84	6	85	10	32	1	54	1.44
8670574--8670640	34	2.0	34	100	0	134	34	8	23	32	1.86
8670962--8671000	20	2.0	20	94	0	69	28	17	17	35	1.94
8677073--8677121	20	2.5	21	78	21	61	63	0	0	36	0.95
8677084--8677126	9	4.7	9	81	16	52	62	2	0	34	1.08
8677084--8677142	26	2.2	27	85	11	77	62	1	1	33	1.15
8677973--8678042	29	2.4	29	79	9	79	40	2	17	40	1.64
8685715--8685757	22	2.0	22	90	0	68	41	0	2	55	1.12
8687989--8688052	33	1.9	34	84	9	87	45	9	6	39	1.62
8688755--8688824	32	2.2	32	94	0	122	51	4	5	38	1.45
8689350--8689379	13	2.3	13	94	0	51	90	0	10	0	0.47
8690453--8690622	87	2.0	87	85	2	234	38	22	9	30	1.86
8693535--8693684	31	5.0	29	71	10	106	54	4	4	38	1.38
8700414--8700455	2	21.5	2	82	4	50	52	0	7	40	1.29
8700558--8700606	21	2.4	20	93	6	89	46	10	10	32	1.71
8701381--8701412	15	2.1	15	100	0	64	53	6	12	28	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8702166--8703062	119	7.5	119	77	6	573	46	15	21	17	1.84
8702406--8703062	357	1.8	355	83	1	866	46	15	20	17	1.83
8702191--8703062	238	3.7	237	77	5	776	46	15	21	17	1.84
8703768--8703876	46	2.3	47	88	1	157	20	22	14	42	1.88
8713616--8713669	18	3.0	19	78	10	69	62	1	16	18	1.41
8715327--8715364	3	12.7	3	94	0	67	65	0	2	31	1.06
8717642--8718020	191	2.0	191	98	1	742	38	21	10	29	1.86
8719196--8719243	15	3.3	14	77	11	51	64	2	0	33	1.05
8720385--8720520	50	2.7	49	80	2	146	40	16	11	32	1.83
8720629--8720812	42	4.4	42	77	10	189	40	19	11	27	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117