genome.fa.s101.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  60  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11117556--11117582	2	13.5	2	100	0	54	0	48	0	51	1.00
11121167--11121205	11	3.5	11	85	0	51	25	0	23	51	1.49
11123444--11123486	23	1.9	23	90	4	70	32	0	2	65	1.06
11124106--11124144	2	20.0	2	89	5	62	51	2	0	46	1.14
11131378--11131403	12	2.2	12	100	0	52	34	23	11	30	1.90
11134878--11134907	7	4.4	7	91	8	53	73	0	0	26	0.84
11134880--11134905	13	2.0	13	100	0	52	76	0	0	23	0.78
11135185--11135250	32	2.1	32	88	5	98	42	1	0	56	1.08
11136623--11137575	321	3.0	319	86	4	1281	36	11	14	38	1.82
11136990--11137574	307	1.9	307	89	2	915	36	11	14	37	1.83
11139849--11139908	13	5.0	13	71	22	51	25	5	15	55	1.60
11139850--11139908	26	2.5	22	84	15	75	25	5	15	54	1.61
11139996--11140062	26	2.7	27	70	25	67	22	8	13	55	1.66
11144100--11144126	2	13.5	2	100	0	54	48	0	0	51	1.00
11150090--11150157	25	2.6	26	82	13	70	54	2	4	38	1.36
11151006--11151038	2	16.5	2	100	0	66	48	0	0	51	1.00
11153906--11153971	19	3.6	17	71	16	51	46	0	3	50	1.16
11153882--11153935	22	2.5	22	75	6	56	55	0	0	44	0.99
11154110--11154140	15	2.1	15	93	0	53	51	3	0	45	1.17
11154757--11154789	16	2.1	16	100	0	66	24	6	27	42	1.78
11155000--11155079	22	3.4	22	73	19	63	65	0	2	32	1.06
11156994--11157060	34	2.0	34	85	5	91	32	11	17	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11165996--11166073	28	2.7	28	88	4	102	24	2	24	48	1.63
11169488--11169691	64	3.2	60	75	13	196	31	17	12	38	1.88
11169452--11169691	62	3.8	61	75	7	212	30	15	15	39	1.87
11169404--11169693	126	2.3	126	85	5	372	31	14	14	40	1.85
11169873--11170081	64	3.3	63	75	9	183	37	17	9	35	1.82
11170260--11170293	14	2.4	14	95	0	59	44	38	2	14	1.61
11173810--11173891	22	3.6	22	73	18	71	76	8	1	13	1.06
11173857--11173927	28	2.5	28	73	8	72	77	5	0	16	0.95
11174740--11174797	3	20.3	3	73	16	52	63	5	0	31	1.16
11174741--11174859	23	4.8	24	73	12	107	56	8	0	35	1.30
11174776--11174853	28	2.9	28	76	14	74	55	8	0	35	1.32
11175106--11175452	55	6.3	55	75	12	275	40	13	21	23	1.89
11175064--11175452	110	3.5	110	81	6	412	41	13	21	23	1.88
11175376--11175474	25	3.8	25	68	12	63	41	17	21	20	1.90
11181161--11181231	5	14.4	5	72	16	51	74	2	0	22	0.94
11181162--11181243	19	4.2	19	74	11	76	76	2	2	18	1.00
11181161--11181231	11	6.2	11	78	14	63	74	2	0	22	0.94
11181161--11181223	24	2.6	24	78	14	76	76	3	0	20	0.93
11181606--11181653	20	2.4	20	82	6	62	47	31	6	14	1.69
11181606--11181661	20	2.8	19	77	17	60	46	32	5	16	1.69
11182056--11182093	8	4.8	8	81	12	51	57	2	2	36	1.26
11182126--11182185	25	2.3	28	80	11	74	65	6	1	26	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11182008--11182173	3	57.3	3	77	13	62	59	6	6	27	1.48
11182159--11182207	18	2.7	18	81	9	55	57	10	0	32	1.32
11183939--11183982	21	2.1	21	83	8	54	15	4	6	72	1.22
11183976--11184015	13	3.3	13	73	20	50	25	5	12	57	1.55
11184138--11184209	12	6.5	11	72	16	60	19	4	12	63	1.44
11184138--11184209	34	2.2	32	87	5	99	19	4	12	63	1.44
11184136--11184188	22	2.4	22	84	12	72	20	3	11	64	1.42
11184138--11184209	32	2.2	34	85	9	96	19	4	12	63	1.44
11187014--11187048	17	2.0	18	88	5	54	34	0	0	65	0.93
11187179--11187214	18	1.9	19	88	5	56	38	8	0	52	1.32
11188336--11188384	25	1.9	26	88	12	75	46	6	4	42	1.47
11192133--11192159	14	1.9	14	100	0	54	59	7	0	33	1.25
11192268--11192346	21	3.6	21	73	15	70	37	0	1	60	1.05
11192811--11192852	15	3.0	14	83	10	50	64	0	0	35	0.94
11192801--11192853	24	2.2	25	83	10	65	56	0	1	41	1.10
11193366--11193394	14	2.1	14	100	0	58	44	27	6	20	1.77
11196588--11196630	21	2.0	21	86	0	59	53	0	0	46	1.00
11197622--11197661	13	3.1	13	81	0	53	70	0	0	30	0.88
11199955--11199979	12	2.1	12	100	0	50	16	24	0	60	1.36
11204404--11204656	129	2.0	129	95	1	454	49	16	7	26	1.72
11205234--11205676	157	2.8	158	83	2	523	43	18	8	30	1.80
11210774--11210798	11	2.3	11	100	0	50	20	8	8	64	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11211665--11211689	2	12.5	2	100	0	50	52	0	0	48	1.00
11211859--11211912	19	2.8	19	94	0	90	33	9	20	37	1.84
11214184--11214225	21	2.0	22	90	4	68	33	35	7	23	1.82
11218933--11219078	74	2.0	74	97	0	274	42	8	17	31	1.79
11222624--11222667	12	3.6	13	82	14	58	34	0	0	65	0.93
11222626--11222671	18	2.6	18	87	12	69	34	0	0	65	0.93
11222639--11222685	18	2.6	18	83	6	51	40	0	0	59	0.97
11229620--11229662	12	3.5	12	78	6	50	4	9	6	79	1.06
11231668--11231718	21	2.4	22	77	9	61	35	3	27	33	1.75
11236228--11236411	89	2.1	89	92	2	307	35	4	8	51	1.53
11239161--11239238	30	2.7	30	84	13	110	33	11	17	37	1.86
11239219--11239296	38	2.2	36	81	9	88	29	14	17	38	1.89
11240296--11240362	34	2.0	34	91	5	109	19	2	16	61	1.47
11240809--11240862	22	2.4	22	75	3	54	18	1	9	70	1.23
11241517--11241562	24	2.0	22	87	8	65	26	0	10	63	1.27
11241522--11241568	21	2.1	24	84	11	64	29	0	6	63	1.19
11241623--11241665	18	2.4	18	76	3	52	58	0	2	39	1.11
11242555--11242596	21	2.0	22	85	4	59	78	0	14	7	0.95
11242759--11243420	49	13.6	49	85	1	825	37	22	11	28	1.89
11254086--11254126	15	2.7	15	82	17	57	0	2	17	80	0.82
11254691--11254724	7	4.9	7	89	10	52	23	0	0	76	0.79
11254722--11254756	18	2.0	17	88	5	52	0	22	0	77	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11255015--11255063	19	2.8	17	80	17	55	61	12	2	24	1.42
11255720--11255774	20	2.6	21	82	11	67	27	5	0	67	1.12
11255825--11255854	7	4.3	7	91	0	51	70	0	0	30	0.88
11256311--11256357	21	2.2	21	84	0	58	70	4	2	23	1.16
11268125--11268602	97	4.9	97	81	6	558	28	11	22	37	1.89
11268129--11268602	194	2.4	191	85	5	621	28	12	22	37	1.90
11268129--11268602	48	9.8	47	82	7	547	28	12	22	37	1.90
11268765--11268812	12	4.0	12	83	5	62	0	20	0	79	0.74
11268775--11268816	21	2.0	22	95	4	77	0	26	0	73	0.83
11269789--11269835	21	2.1	23	84	7	62	29	2	0	68	1.02
11269884--11269918	17	2.1	17	89	10	54	68	0	0	31	0.90
11271940--11272039	34	2.9	34	88	2	130	44	14	12	30	1.81
11272183--11272226	23	2.0	23	86	4	63	75	0	20	4	0.98
11272182--11272229	24	2.0	24	84	8	62	75	0	20	4	0.97
11272528--11272556	3	9.7	3	100	0	58	31	0	0	68	0.89
11273526--11273618	44	2.1	44	94	2	161	58	5	13	22	1.56
11274051--11274083	11	2.8	12	86	9	50	48	0	0	51	1.00
11274050--11274090	19	2.0	21	86	13	59	46	0	0	53	1.00
11276939--11276963	8	3.1	8	100	0	50	24	0	76	0	0.80
11279110--11279142	17	2.1	17	88	11	52	69	6	0	24	1.10
11287294--11287329	14	2.6	14	91	8	56	36	0	5	58	1.22
11292612--11292684	24	3.0	24	74	8	67	47	6	5	39	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11292750--11292830	26	2.9	26	76	16	81	53	0	2	44	1.14
11293090--11293132	22	1.9	23	90	4	70	44	0	0	55	0.99
11295258--11295302	18	2.4	18	85	7	54	71	2	4	22	1.15
11299792--11299899	41	2.6	41	82	5	146	36	12	7	44	1.70
11300229--11300316	41	2.1	41	83	4	106	35	11	7	45	1.69
11306688--11306721	9	3.7	9	84	7	50	58	14	0	26	1.36
11306896--11306937	16	2.6	16	84	0	57	42	7	7	42	1.59
11308193--11308237	21	2.2	20	84	4	54	22	17	2	57	1.50
11315777--11315834	25	2.4	25	85	8	75	34	10	3	51	1.53
11322871--11322956	42	2.1	41	84	2	109	37	12	5	44	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117