genome.fa.s101.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  17  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1850160--1850217	19	3.3	18	70	20	52	36	8	1	53	1.42
1850309--1850364	19	2.7	21	81	16	71	60	0	0	39	0.97
1850277--1850364	43	2.1	42	83	8	108	60	0	1	38	1.04
1850349--1850386	20	2.0	20	84	5	51	42	2	2	52	1.29
1851847--1851948	52	2.0	52	88	3	152	42	6	21	29	1.79
1852479--1852527	25	2.0	25	95	0	89	36	10	32	20	1.86
1853698--1853799	51	2.0	52	84	5	136	46	7	18	27	1.77
1851770--1854238	928	2.7	913	82	5	3043	34	9	23	33	1.86
1854526--1854596	36	2.0	35	81	15	83	50	1	1	46	1.18
1855527--1856711	144	8.2	144	92	1	1892	25	23	16	34	1.95
1858589--1858764	86	2.0	87	93	1	300	38	11	9	40	1.74
1861706--1861751	14	3.3	14	79	8	58	73	0	26	0	0.83
1871092--1871136	22	2.0	23	86	4	65	66	0	2	31	1.04
1871131--1871186	20	2.6	22	83	13	80	62	0	0	37	0.95
1876213--1876264	23	2.6	18	71	25	50	46	5	15	32	1.70
1877810--1878413	144	4.2	145	86	4	805	27	21	15	35	1.94
1880290--1880471	89	2.0	89	98	0	355	39	10	9	40	1.73
1883415--1883460	24	2.0	23	91	4	74	17	0	4	78	0.91
1884724--1885174	40	10.8	41	80	8	418	43	18	13	23	1.86
1885943--1886088	70	2.2	66	79	8	154	36	21	6	34	1.81
1886865--1886915	19	2.7	18	85	8	75	7	11	0	80	0.90
1886614--1886911	148	2.0	149	85	6	408	20	20	6	52	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1886865--1886910	9	4.8	10	86	10	69	8	10	0	80	0.91
1889309--1889446	21	6.6	21	99	0	267	35	13	9	41	1.77
1889623--1889664	19	2.2	19	86	0	57	23	30	14	30	1.94
1890581--1890783	112	1.8	109	88	4	309	25	13	7	53	1.65
1891141--1891192	25	2.1	25	81	0	59	21	0	3	75	0.97
1891712--1891778	31	2.2	31	86	5	91	46	19	13	20	1.83
1896282--1896324	21	1.9	24	86	13	65	20	0	6	72	1.08
1896824--1896876	3	17.7	3	100	0	106	67	0	0	32	0.91
1902643--1902684	10	4.1	10	85	11	50	85	2	11	0	0.68
1902645--1902684	12	3.3	12	83	13	55	87	2	10	0	0.63
1902645--1902684	14	3.1	13	86	10	55	87	2	10	0	0.63
1903074--1903112	8	4.9	8	84	12	53	71	0	17	10	1.12
1903074--1903122	16	3.0	16	88	8	64	71	0	20	8	1.11
1904263--1904465	84	2.5	79	90	4	307	39	13	16	31	1.87
1904407--1904486	21	3.9	21	93	1	126	37	12	15	35	1.85
1904343--1904566	105	2.2	101	87	4	315	38	12	16	33	1.85
1904448--1904608	80	2.0	80	91	2	261	34	12	19	34	1.89
1904448--1904626	80	2.2	80	87	4	256	35	11	19	33	1.87
1905038--1905224	41	4.5	42	84	7	231	25	11	19	42	1.85
1905038--1905224	83	2.3	83	86	2	261	25	11	19	42	1.85
1905031--1905255	42	5.4	43	80	7	234	24	13	21	40	1.89
1905405--1905446	7	6.0	7	86	8	59	83	2	2	11	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1905405--1905446	15	3.0	14	86	10	59	83	2	2	11	0.84
1907542--1907567	3	8.7	3	100	0	52	69	0	0	30	0.89
1908157--1908558	133	3.0	133	96	0	732	47	20	7	24	1.76
1912543--1912878	59	5.7	58	86	6	437	43	6	13	35	1.71
1912536--1912878	178	1.9	177	88	5	514	43	6	13	35	1.71
1914852--1914909	29	2.0	29	100	0	116	37	10	3	48	1.54
1914823--1914979	82	1.9	78	86	12	219	35	14	5	43	1.69
1914933--1914989	30	2.0	29	83	16	75	47	7	3	42	1.47
1915374--1915414	20	2.0	20	85	0	55	53	0	2	43	1.13
1917265--1917443	58	3.2	56	85	8	222	36	11	9	41	1.74
1917447--1917501	5	10.4	5	86	7	74	78	1	1	18	0.94
1917447--1917501	11	5.2	10	85	8	74	78	1	1	18	0.94
1917446--1917498	16	3.2	16	92	5	88	79	1	1	16	0.92
1917471--1917558	3	29.7	3	70	17	60	68	3	1	27	1.13
1918280--1918306	11	2.5	11	100	0	54	92	0	7	0	0.38
1918302--1918460	53	3.1	54	77	11	138	63	1	5	29	1.25
1918305--1918379	23	3.3	23	78	12	84	62	1	5	30	1.25
1918333--1918417	33	2.5	34	79	12	95	65	1	3	29	1.16
1918340--1918460	28	4.5	28	73	18	98	62	0	5	30	1.24
1918352--1918460	50	2.2	50	82	9	125	63	0	5	30	1.23
1918373--1918437	28	2.3	30	89	7	100	66	1	4	27	1.20
1918402--1918466	22	3.0	22	88	6	89	61	0	6	32	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1918468--1918507	20	2.2	18	86	13	55	80	2	0	17	0.83
1918703--1918909	43	4.9	43	82	4	233	41	19	15	23	1.90
1918752--1918967	43	5.2	40	77	10	134	38	18	16	26	1.92
1918862--1919002	41	3.5	41	81	5	144	36	17	17	28	1.92
1920026--1920114	8	11.2	8	71	13	53	6	12	0	80	0.88
1920020--1920113	21	4.5	21	83	13	115	6	12	0	80	0.88
1920046--1920092	9	5.0	9	87	12	60	10	8	0	80	0.89
1920026--1920092	30	2.3	29	85	14	86	7	10	0	82	0.85
1930482--1930520	15	2.4	17	87	8	55	82	2	5	10	0.93
1930499--1930532	16	2.0	16	88	11	50	76	0	5	17	0.98
1930589--1930779	57	3.3	57	87	4	267	36	14	7	41	1.74
1930656--1930742	29	3.2	26	67	25	70	29	13	6	49	1.68
1930760--1930799	20	2.0	20	100	0	80	40	15	15	30	1.87
1930696--1930857	78	2.1	78	90	3	256	37	14	8	38	1.77
1930645--1930916	136	2.0	137	89	3	415	36	14	8	40	1.77
1930773--1930959	59	3.2	58	90	3	286	37	14	7	40	1.74
1930964--1931019	5	10.4	5	81	14	67	76	0	5	17	0.96
1930963--1931016	17	3.2	16	82	10	72	77	0	5	16	0.94
1931765--1931820	29	1.9	29	82	7	69	67	1	7	23	1.24
1931815--1931928	49	2.4	49	84	11	139	62	0	6	30	1.26
1931776--1931927	84	1.9	80	81	13	184	61	1	6	30	1.29
1931856--1931934	22	3.3	23	80	10	79	59	0	7	32	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1931900--1931991	21	4.2	22	74	19	59	67	0	2	30	1.03
1931950--1931997	3	15.7	3	95	4	87	68	0	0	31	0.90
1931773--1932000	49	4.5	51	71	16	138	65	0	4	29	1.18
1934579--1934687	54	2.0	54	83	5	139	45	7	7	39	1.60
1935735--1935784	17	2.8	18	74	17	50	70	4	0	26	1.05
1936830--1936872	13	3.2	13	80	6	50	25	0	2	72	0.97
1936830--1936882	15	3.5	15	75	15	56	26	0	1	71	0.96
1936848--1936887	21	1.9	21	89	0	62	30	0	5	65	1.14
1938432--1938496	34	2.0	33	82	11	80	35	7	13	43	1.73
1939360--1939406	24	2.0	24	91	4	78	44	4	4	46	1.42
1940034--1940090	15	4.0	14	76	13	62	12	5	3	78	1.03
1940034--1940094	30	2.1	28	87	6	86	13	4	3	78	1.03
1940545--1940598	17	3.2	16	86	7	72	70	0	0	29	0.88
1941704--1941737	18	1.9	17	93	0	50	11	14	0	73	1.10
1942180--1942216	19	1.9	19	88	0	56	37	10	0	51	1.37
1942271--1942300	13	2.3	13	100	0	60	33	0	13	53	1.40
1942357--1942412	20	3.0	18	76	19	53	57	0	0	42	0.99
1942348--1942405	20	2.7	22	81	13	75	60	0	0	39	0.97
1942374--1942431	27	2.1	27	81	6	64	56	0	0	43	0.99
1942383--1942444	27	2.3	27	83	10	81	51	0	0	48	1.00
1945029--1945060	8	4.0	8	100	0	64	25	12	12	50	1.75
1946078--1946129	13	4.1	13	76	20	56	32	5	1	59	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1946379--1946458	22	3.6	21	73	19	65	47	1	1	50	1.17
1946391--1946459	22	3.2	20	74	20	68	49	1	1	47	1.19
1946440--1946479	17	2.4	17	78	0	53	50	0	0	50	1.00
1947312--1947349	18	2.0	18	90	10	58	44	0	0	55	0.99
1948048--1948072	13	1.9	13	100	0	50	72	0	0	28	0.86
1948375--1948413	19	1.9	19	85	10	51	35	0	5	58	1.20
1950673--1950741	36	1.9	36	94	2	122	33	15	15	34	1.90
1952468--1952508	21	2.0	21	85	9	57	19	14	12	53	1.72
1954737--1956336	356	4.5	353	83	5	1935	35	12	16	35	1.86
1962871--1963134	135	1.9	136	79	6	295	39	20	13	26	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117