genome.fa.s101.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  102  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17981506--17981557	26	2.0	26	100	0	104	26	19	26	26	1.99
17980204--17982523	917	2.6	896	86	4	3216	26	24	24	24	2.00
17982421--17982473	26	2.0	26	92	0	88	24	18	28	28	1.98
17983824--17983876	26	2.0	26	96	0	97	28	20	24	26	1.99
17983665--17984029	185	2.0	185	87	2	536	20	29	30	19	1.97
17983850--17989198	873	6.2	868	80	8	5590	25	24	25	25	2.00
17995307--17995359	26	2.0	26	100	0	106	26	26	20	26	1.99
17996019--17996043	4	6.2	4	100	0	50	0	72	28	0	0.86
17996233--17996285	26	2.0	26	92	0	88	22	26	22	28	1.99
17997148--17997200	26	2.0	26	92	0	88	28	24	18	28	1.98
17994537--18001579	904	7.9	903	76	9	5945	26	25	23	25	2.00
17998042--17998093	26	2.0	26	100	0	104	30	23	15	30	1.95
17998893--17998945	26	2.0	26	88	0	79	28	22	18	30	1.98
17998123--18001579	896	3.9	895	85	5	4645	25	25	23	25	2.00
17999793--17999845	26	2.0	26	88	0	79	30	24	16	28	1.97
18000664--18000716	26	2.0	26	88	0	79	26	24	22	26	2.00
18003055--18003107	26	2.0	26	96	0	97	28	26	18	26	1.98
18003933--18010123	858	7.0	870	83	5	7104	26	24	23	25	2.00
18008266--18008347	26	3.2	26	96	0	146	28	25	19	26	1.99
18010100--18010149	26	1.9	26	91	0	82	24	26	20	30	1.98
18007394--18010178	931	3.1	895	84	4	3568	25	24	24	25	2.00
18009938--18010336	185	2.2	184	83	3	507	20	26	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18012784--18012842	26	2.3	26	91	5	95	27	27	18	27	1.98
18013689--18013738	26	1.9	26	91	0	82	26	24	22	28	1.99
18014096--18014148	26	2.0	26	88	0	79	26	26	22	24	2.00
18013511--18014315	410	2.0	410	87	2	1168	19	25	32	22	1.97
18014122--18016352	869	2.5	861	84	5	2774	25	24	24	25	2.00
18015858--18015909	26	2.0	25	88	3	77	30	23	15	30	1.95
18017434--18017486	26	2.0	26	92	0	88	28	24	18	28	1.98
18020112--18020162	26	2.0	26	88	0	75	27	23	17	31	1.97
18021005--18021057	26	2.0	26	100	0	106	26	26	20	26	1.99
18019244--18022211	890	3.3	887	86	3	3985	25	25	24	25	2.00
18021898--18021950	26	2.0	26	92	0	88	30	22	18	28	1.98
18024086--18024138	26	2.0	26	96	0	97	28	20	24	26	1.99
18023212--18064248	904	45.4	900	74	11	23440	25	24	24	25	2.00
18026803--18026853	26	2.0	26	92	0	84	29	17	25	27	1.98
18030323--18030363	17	2.4	17	91	0	64	21	34	26	17	1.95
18031239--18031291	26	2.0	26	96	0	97	28	20	26	24	1.99
18032143--18032194	26	2.0	26	84	0	68	30	19	21	28	1.97
18037025--18037077	26	2.0	26	96	0	97	24	20	28	26	1.99
18038808--18038886	26	3.0	26	92	0	131	27	15	26	30	1.96
18040601--18040653	26	2.0	26	100	0	106	26	20	26	26	1.99
18041484--18041539	26	2.2	26	96	0	103	28	19	23	28	1.98
18044115--18044167	26	2.0	26	88	0	79	32	20	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18043248--18045795	882	2.9	878	86	3	3423	25	24	24	25	2.00
18044992--18045044	26	2.0	26	92	0	88	26	16	26	30	1.97
18046048--18046100	26	2.0	26	92	0	88	26	20	24	28	1.99
18046926--18046978	26	2.0	26	92	0	88	28	15	24	32	1.95
18047827--18047877	26	2.0	26	96	0	93	29	15	29	25	1.96
18051407--18051459	26	2.0	26	92	0	88	28	22	24	24	2.00
18054934--18054986	26	2.0	26	89	7	81	30	20	26	22	1.98
18053349--18064248	889	12.2	888	86	4	13667	25	23	24	25	2.00
18056716--18056768	26	2.0	26	88	0	79	24	18	30	26	1.98
18058483--18058536	25	2.0	28	89	10	87	27	18	25	27	1.98
18061139--18061191	26	2.0	26	96	0	97	26	18	26	28	1.98
18062056--18062105	26	1.9	26	91	0	82	32	18	24	26	1.97
18062955--18063011	26	2.2	26	93	0	96	28	17	24	29	1.97
18063859--18063915	26	2.2	26	93	0	96	28	17	24	29	1.97
18064550--18064620	32	2.2	32	80	9	81	11	8	5	74	1.20
18065526--18065568	18	2.2	20	76	12	54	13	9	0	76	1.01
18065532--18065581	23	2.1	24	88	3	75	14	6	0	80	0.90
18065512--18065571	19	3.3	18	77	9	59	11	6	3	78	1.06
18065456--18065581	7	17.0	7	70	13	67	15	6	2	75	1.11
18066180--18066238	7	8.1	7	77	5	55	16	6	1	74	1.11
18066906--18066964	7	8.1	7	77	5	55	16	6	1	74	1.11
18066984--18067022	15	2.4	16	83	8	53	12	7	0	79	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18064248--18072158	726	11.0	716	90	6	12210	16	11	4	67	1.37
18067624--18067693	7	9.6	7	74	9	59	15	4	4	75	1.11
18067702--18067747	23	2.0	23	86	0	65	13	6	0	80	0.89
18067703--18067740	19	2.1	18	90	5	58	7	7	0	84	0.79
18067706--18067748	19	2.3	18	80	11	50	11	9	0	79	0.95
18068349--18068417	7	9.6	7	79	6	75	15	4	1	78	0.98
18068348--18068463	15	7.3	15	72	18	67	14	6	2	76	1.08
18068581--18068615	16	2.2	16	89	0	52	8	14	5	71	1.29
18069027--18069096	7	9.6	7	72	9	50	20	4	1	74	1.07
18069583--18069627	18	2.5	17	82	10	54	6	6	6	80	1.04
18069767--18069791	7	3.6	7	100	0	50	24	0	0	76	0.80
18069755--18069819	25	2.6	25	76	13	62	15	4	3	76	1.07
18069790--18069842	15	3.3	15	81	7	52	13	7	1	77	1.06
18069072--18072158	730	4.3	703	91	6	4667	16	10	4	68	1.35
18070460--18070572	7	15.7	7	67	13	52	15	6	2	75	1.12
18070535--18070573	15	2.6	15	84	11	53	12	10	0	76	1.01
18071190--18071259	7	9.6	7	78	9	77	17	2	2	77	1.02
18071876--18071925	16	2.9	17	77	14	50	8	10	4	78	1.09
18071914--18071983	7	9.6	7	74	9	59	14	4	5	75	1.14
18071964--18072015	20	2.8	20	82	8	65	13	3	5	76	1.10
18071991--18072038	24	2.0	25	84	12	64	14	6	0	79	0.92
18071991--18072038	25	2.0	24	84	12	62	14	6	0	79	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18072604--18072656	26	2.0	26	100	0	106	26	16	26	30	1.97
18075272--18075324	26	2.0	26	88	0	79	28	16	24	30	1.97
18072155--18078843	893	7.6	889	83	7	7927	25	23	24	26	2.00
18082180--18082230	26	2.0	26	96	0	93	25	15	27	31	1.96
18082417--18082446	4	7.5	4	92	0	51	3	26	70	0	1.03
18083069--18083119	26	2.0	26	96	0	93	27	17	25	29	1.98
18083937--18083989	25	2.0	27	92	7	92	28	18	26	26	1.98
18085720--18085772	26	2.0	26	92	0	88	30	18	24	26	1.98
18078791--18086952	895	9.2	893	83	6	9728	25	23	24	25	2.00
18087125--18087177	26	2.0	26	100	0	106	26	20	26	26	1.99
18088175--18092456	711	6.1	708	88	2	5846	26	22	23	27	2.00
18092464--18092840	159	2.4	159	83	2	445	23	30	27	18	1.98
18093490--18093540	26	2.0	26	92	0	84	29	19	21	29	1.98
18094374--18094426	26	2.0	26	96	0	97	28	20	24	26	1.99
18095275--18095327	26	2.0	26	89	7	81	28	16	24	30	1.97
18092623--18097663	884	5.7	896	86	3	6573	25	23	24	25	2.00
18098690--18098739	26	1.9	26	95	0	91	32	18	22	28	1.97
18099581--18099633	26	2.0	26	92	0	88	28	18	26	26	1.98
18103967--18104019	26	2.0	26	88	0	79	28	20	24	26	1.99
18104856--18104908	26	2.0	26	89	7	81	26	16	24	32	1.97
18101369--18105993	886	5.2	890	83	5	5402	25	24	24	25	2.00
18105751--18105802	26	2.0	26	92	0	86	28	17	25	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18105776--18106152	159	2.4	159	84	1	461	24	28	27	19	1.98
18107657--18108032	159	2.4	159	86	2	515	22	28	29	19	1.98
18107657--18108074	159	2.6	158	83	5	452	22	28	30	18	1.97
18109573--18109625	26	2.0	26	92	0	88	26	16	26	30	1.97
18107816--18116701	891	10.0	894	84	5	10830	25	23	24	25	2.00
18110459--18110511	26	2.0	26	96	0	97	26	20	24	28	1.99
18114001--18114053	26	2.0	26	92	7	90	26	16	26	30	1.97
18115784--18115836	26	2.0	26	85	0	70	26	16	24	32	1.97
18117962--18118014	26	2.0	26	96	0	97	28	20	24	26	1.99
18117078--18118207	575	2.0	579	84	4	1480	23	27	27	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117