genome.fa.s101.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  39  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6930400--6930439	14	2.7	15	84	7	55	65	0	0	35	0.93
6938135--6938163	7	4.1	7	100	0	58	13	72	0	13	1.13
6942108--6942458	178	2.0	175	84	6	458	47	11	18	22	1.81
6964560--6964634	37	2.0	37	97	0	141	50	14	17	17	1.78
6972563--6972661	49	2.0	51	82	4	121	38	11	6	44	1.65
6978695--6978749	29	1.9	29	88	3	85	50	1	1	45	1.22
6980294--6980434	72	2.0	72	80	2	158	31	12	12	42	1.81
6980366--6980634	143	1.9	143	85	1	378	37	11	15	34	1.85
6981245--6981431	91	2.1	90	90	3	295	51	8	9	30	1.64
6985487--6985526	11	3.5	12	83	10	57	67	0	2	30	1.04
6986980--6987005	13	2.0	13	100	0	52	15	15	38	30	1.88
6987812--6987922	46	2.4	46	84	1	141	45	8	9	36	1.67
6988328--6988352	2	12.5	2	100	0	50	52	0	0	48	1.00
6991136--6991166	12	2.6	12	89	0	53	70	12	3	12	1.27
6991471--6991520	19	2.6	19	81	12	66	28	36	24	12	1.91
6992441--6992493	23	2.3	22	78	9	61	66	3	0	30	1.10
7004243--7004441	49	4.0	49	79	8	172	27	10	21	40	1.86
7004285--7004428	49	2.9	49	86	5	182	25	11	20	41	1.87
7004722--7004761	13	3.2	13	89	3	55	12	2	0	85	0.71
7004728--7004783	22	2.5	22	82	11	60	7	12	0	80	0.90
7006800--7006832	10	3.3	10	100	0	66	45	0	0	54	0.99
7007838--7007881	23	1.9	23	85	0	61	2	2	18	77	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7008532--7008736	91	2.2	93	91	3	324	24	15	8	50	1.72
7008867--7008903	11	3.3	11	88	3	56	32	0	0	67	0.91
7015389--7015589	105	1.9	105	86	2	287	45	8	12	32	1.73
7015563--7015663	52	1.9	52	84	4	132	46	4	16	31	1.69
7015757--7015952	99	2.0	99	90	0	311	31	10	23	34	1.88
7020271--7020325	28	2.0	28	96	3	103	49	14	3	32	1.61
7025920--7025972	26	2.0	26	92	0	88	41	3	13	41	1.62
7038372--7038401	11	2.9	10	90	9	51	86	0	13	0	0.57
7039551--7039588	19	2.0	20	89	5	60	34	0	2	63	1.09
7039543--7039599	26	2.2	26	84	6	71	31	0	7	61	1.23
7044423--7044449	7	3.9	7	100	0	54	11	0	29	59	1.32
7048570--7048634	17	3.8	17	79	6	60	33	10	12	43	1.77
7048562--7048610	16	3.0	16	81	3	62	34	12	12	40	1.80
7048562--7048661	35	2.9	35	77	2	87	38	11	13	38	1.79
7049171--7049265	20	4.4	22	67	18	65	38	16	6	37	1.74
7049198--7049305	44	2.4	44	81	4	110	37	15	9	37	1.80
7049409--7049513	44	2.3	44	80	4	111	40	16	3	40	1.66
7050737--7050822	8	10.1	9	77	18	62	12	15	0	72	1.13
7050778--7050821	22	2.0	22	90	4	70	11	9	0	79	0.93
7053499--7053597	51	1.9	51	97	0	189	28	11	29	31	1.91
7053817--7053876	29	2.1	29	93	0	102	45	6	16	31	1.74
7055580--7055635	21	2.9	19	80	12	60	71	3	3	21	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7060283--7060314	16	1.9	17	93	6	57	25	9	15	50	1.74
7064197--7064234	2	19.0	2	100	0	76	0	50	0	50	1.00
7066287--7066331	23	1.9	24	90	4	74	22	4	6	66	1.33
7066343--7066367	11	2.3	11	100	0	50	64	0	8	28	1.22
7070376--7070451	29	2.7	28	80	9	84	44	3	2	48	1.35
7071892--7071944	10	5.4	10	76	13	56	3	26	0	69	1.05
7071864--7071938	29	2.6	29	87	8	100	5	30	0	64	1.16
7071894--7071944	19	2.6	20	87	3	68	3	25	0	70	1.04
7076455--7076541	42	2.1	42	82	4	104	29	24	13	32	1.94
7084424--7084483	18	3.4	17	73	13	59	33	5	1	60	1.29
7086938--7086975	18	2.1	19	85	5	51	26	10	5	57	1.53
7090638--7090689	27	1.9	27	96	0	95	44	7	5	42	1.57
7091787--7091867	28	2.8	28	79	5	81	44	3	6	45	1.46
7094805--7094846	21	2.0	21	90	0	66	40	2	30	26	1.69
7095518--7095544	12	2.2	12	100	0	54	7	0	40	51	1.30
7098581--7098625	2	22.5	2	81	0	54	48	4	2	44	1.35
7100427--7100476	22	2.4	22	93	6	86	50	0	0	50	1.00
7106541--7106593	21	2.4	23	84	9	74	56	0	0	43	0.99
7109144--7109173	2	15.5	2	93	6	53	53	0	0	46	1.00
7110525--7110595	36	2.0	36	91	0	115	18	14	21	46	1.83
7110732--7110802	36	2.0	36	88	0	106	21	14	19	45	1.85
7110737--7110805	18	3.8	18	68	0	57	21	14	17	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7112356--7112424	30	2.3	30	87	5	95	8	37	1	52	1.42
7117099--7117138	2	21.5	2	85	14	59	50	0	0	50	1.00
7120488--7120543	26	2.1	27	96	3	105	33	5	3	57	1.39
7120471--7120537	9	7.4	9	75	6	55	43	2	2	50	1.32
7121664--7121727	33	1.9	33	93	0	110	25	32	12	29	1.92
7127545--7127588	22	2.0	22	90	0	70	34	11	11	43	1.77
7127736--7127792	23	2.5	24	91	8	100	12	24	17	45	1.83
7135845--7135881	2	18.5	2	100	0	74	48	0	0	51	1.00
7137596--7137628	10	3.5	10	84	16	52	54	0	0	45	0.99
7141240--7141336	21	4.6	21	65	14	65	25	5	5	63	1.36
7142169--7142236	13	4.9	13	73	16	57	14	4	2	77	1.04
7142245--7142583	58	5.7	61	83	7	387	50	6	11	32	1.63
7142240--7142584	178	1.9	177	92	1	584	50	6	11	32	1.62
7143149--7143190	22	1.9	22	85	9	59	23	9	4	61	1.45
7153014--7153066	7	8.3	7	81	12	53	81	0	7	11	0.88
7153006--7153060	5	9.5	6	81	14	55	83	0	5	10	0.79
7153014--7153066	13	4.2	13	81	13	56	81	0	7	11	0.88
7153006--7153066	31	2.0	30	87	3	86	81	0	6	11	0.85
7153034--7153060	11	2.5	11	100	0	54	92	0	0	7	0.38
7154043--7154331	42	6.8	43	83	2	343	25	14	18	40	1.89
7154049--7154338	85	3.4	84	87	3	368	26	14	19	40	1.90
7169329--7169429	49	2.0	50	90	1	159	46	12	10	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7170713--7170739	2	13.5	2	100	0	54	48	0	0	51	1.00
7186229--7186257	2	14.5	2	100	0	58	48	0	0	51	1.00
7188955--7188989	18	1.9	18	88	0	52	5	54	5	34	1.48
7191160--7191235	29	2.6	31	83	10	106	55	5	1	38	1.31
7193075--7193127	2	26.5	2	100	0	106	49	0	50	0	1.00
7193745--7193803	15	3.9	15	80	4	64	44	0	1	54	1.10
7198820--7198868	22	2.2	22	89	7	73	42	2	0	55	1.11
7207300--7207737	203	2.2	201	80	8	498	39	13	13	34	1.82
7213869--7213972	51	2.0	51	94	0	181	41	6	7	44	1.59
7216954--7217096	71	2.0	71	87	1	207	43	9	9	37	1.70
7221692--7221733	16	2.5	16	82	17	50	57	0	0	42	0.99
7221747--7221797	18	3.1	17	78	13	54	35	0	0	64	0.94
7222058--7222105	24	2.0	24	88	4	71	39	0	0	60	0.97
7222057--7222107	23	2.2	22	83	10	66	41	0	0	58	0.98
7226168--7226193	2	13.0	2	100	0	52	50	0	0	50	1.00
7226748--7226779	2	16.0	2	93	0	55	46	0	3	50	1.17
7238939--7238987	9	5.6	9	95	4	91	79	0	10	10	0.93
7238940--7238995	9	6.6	8	95	2	76	76	0	12	10	1.01
7239995--7240540	42	13.1	42	88	3	757	25	17	22	35	1.95
7239995--7240540	83	6.6	83	90	1	765	25	17	22	35	1.95
7239995--7240540	125	4.4	124	89	2	790	25	17	22	35	1.95
7240748--7240856	6	18.8	6	77	9	93	22	1	0	74	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7240732--7240858	18	7.4	17	73	19	77	20	3	0	75	0.99
7240749--7240855	28	3.8	27	79	17	87	23	1	0	73	0.98
7240947--7241005	21	3.0	20	79	18	61	23	5	5	66	1.32
7240998--7241047	9	5.3	9	83	7	64	10	4	4	82	0.94
7242288--7242313	2	13.0	2	100	0	52	50	0	0	50	1.00
7245886--7245920	18	1.9	18	100	0	70	45	8	5	40	1.58
7245933--7246169	22	10.8	22	76	6	169	40	9	7	43	1.65
7246112--7246210	52	1.9	52	83	8	130	44	10	2	43	1.49
7246166--7246221	22	2.5	22	91	0	85	44	14	1	39	1.55
7246254--7246304	22	2.3	21	87	9	75	33	5	5	54	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117