genome.fa.s101.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  49  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9032801--9032889	3	29.7	3	97	0	169	33	1	0	65	1.00
9033179--9033268	3	30.0	3	90	0	144	33	4	0	62	1.15
9034125--9034171	19	2.5	19	86	3	60	12	4	4	78	1.04
9035366--9035411	18	2.6	17	86	6	56	73	0	15	10	1.08
9035693--9035737	11	3.9	12	82	8	58	77	2	13	6	1.05
9036541--9036580	15	2.8	16	78	21	52	35	17	5	42	1.71
9037155--9037314	44	3.7	43	78	5	160	27	10	16	45	1.81
9037320--9037499	43	4.1	43	76	9	141	30	10	13	46	1.77
9041320--9041410	45	2.0	45	100	0	182	64	10	15	8	1.48
9043289--9043349	30	2.0	30	100	0	122	60	3	3	32	1.29
9045416--9045465	20	2.4	21	78	18	59	48	0	0	52	1.00
9045493--9045533	18	2.3	19	87	8	59	60	0	0	39	0.96
9052951--9052987	20	2.0	20	89	10	60	29	0	2	67	1.04
9052991--9053044	21	2.5	21	79	11	65	44	0	3	51	1.19
9053072--9053109	19	2.1	18	85	9	51	60	0	2	36	1.11
9053152--9053185	13	2.6	13	85	0	50	47	0	0	52	1.00
9058908--9058941	2	17.0	2	100	0	68	50	0	0	50	1.00
9060347--9060472	66	1.9	67	90	1	200	38	12	14	34	1.84
9059847--9061062	629	1.9	628	91	1	2001	37	12	10	39	1.78
9060980--9061110	67	2.0	67	85	0	181	37	11	14	36	1.82
9061137--9062510	271	5.0	270	71	16	1091	43	7	6	42	1.58
9061651--9061680	12	2.6	12	94	5	53	23	6	20	50	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9061047--9062607	813	1.9	810	91	3	2537	43	7	6	43	1.58
9062246--9063573	648	2.0	663	84	8	1770	39	7	7	46	1.60
9063241--9063312	32	2.3	32	90	2	110	30	8	15	45	1.75
9065452--9065505	22	2.5	22	84	0	63	12	24	24	38	1.90
9064517--9065491	487	2.0	487	96	1	1812	35	10	14	39	1.82
9067921--9067945	2	12.5	2	100	0	50	48	0	0	52	1.00
9068707--9068768	26	2.5	26	82	12	76	53	0	1	45	1.10
9068695--9068774	26	3.0	27	72	20	69	51	0	1	47	1.08
9068796--9068830	18	2.0	18	88	5	54	54	0	5	40	1.24
9072272--9072304	17	2.0	17	88	5	50	57	3	0	39	1.14
9080038--9080218	64	2.9	59	68	13	139	35	13	8	41	1.75
9079924--9080945	564	1.8	560	83	5	1229	36	12	10	40	1.78
9081457--9081528	28	2.6	28	90	0	117	26	4	22	47	1.69
9081488--9081590	12	8.1	12	77	12	71	21	6	26	45	1.76
9081523--9081599	13	6.2	13	79	7	88	19	7	28	44	1.78
9081523--9081599	25	3.1	25	92	0	127	19	7	28	44	1.78
9081560--9081608	25	2.0	25	83	0	62	22	12	24	40	1.88
9083788--9083998	116	1.8	114	82	4	271	37	10	5	46	1.61
9083798--9084204	127	3.4	118	78	10	326	38	9	5	46	1.61
9083800--9084214	59	6.9	60	77	13	363	37	9	5	47	1.60
9083975--9084110	68	2.0	68	89	0	209	39	8	8	43	1.65
9083917--9084170	127	2.0	128	86	5	363	38	8	6	46	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9084137--9084312	95	1.8	97	91	3	293	34	8	3	52	1.50
9085684--9086099	86	4.8	86	77	4	351	47	14	17	20	1.83
9096568--9096599	4	7.8	4	96	3	55	75	3	0	21	0.95
9106384--9106435	24	2.2	24	89	0	77	42	23	23	11	1.86
9107891--9108020	30	4.4	30	74	11	115	20	0	31	47	1.55
9107972--9108121	72	2.0	75	85	8	202	18	0	34	47	1.53
9108029--9108106	30	2.7	29	86	7	113	15	1	35	47	1.54
9108032--9108121	29	3.1	30	85	3	121	15	1	33	50	1.52
9108011--9108121	15	7.7	15	70	11	88	18	0	32	48	1.54
9110077--9110183	36	3.0	36	73	4	99	48	20	19	11	1.79
9110086--9110324	37	6.5	36	71	11	117	49	16	17	15	1.79
9110155--9110333	74	2.4	73	78	6	191	51	15	16	16	1.77
9110341--9110518	36	4.9	36	77	11	141	46	17	20	16	1.85
9110397--9110514	37	3.2	37	80	9	134	46	15	22	16	1.83
9110539--9110603	22	3.0	22	82	6	78	36	13	16	32	1.89
9110504--9110845	132	2.6	131	84	2	409	41	14	18	25	1.89
9110706--9111065	110	3.3	108	80	4	373	41	15	18	24	1.89
9111025--9111067	22	2.0	22	85	0	59	32	11	20	34	1.89
9111039--9111083	22	2.0	22	82	0	54	35	17	17	28	1.93
9110935--9111184	132	1.9	132	82	1	313	42	15	16	24	1.87
9111797--9111905	41	2.7	40	77	4	119	32	17	21	29	1.96
9111826--9111855	15	2.0	15	93	0	51	36	13	30	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9113319--9113355	15	2.6	14	87	8	56	0	10	0	89	0.49
9120002--9120058	16	3.6	16	79	11	64	28	1	28	42	1.66
9119987--9120233	30	8.4	29	71	16	145	22	1	29	46	1.61
9120074--9120233	59	2.7	59	80	8	155	21	1	30	47	1.59
9120152--9120236	14	5.9	14	76	16	77	21	1	29	48	1.58
9136984--9137027	22	2.0	22	95	0	79	31	11	13	43	1.80
9140988--9141031	22	2.0	22	95	0	79	31	11	13	43	1.80
9145293--9145350	28	2.1	28	87	6	82	46	0	1	51	1.11
9145480--9145518	15	2.6	15	100	0	78	74	0	5	20	1.01
9145716--9145776	3	20.3	3	100	0	122	32	0	0	67	0.91
9150122--9150153	3	10.7	3	100	0	64	31	0	0	68	0.90
9150125--9150184	9	6.5	10	81	14	51	21	0	5	73	1.02
9150823--9150856	6	5.7	6	89	0	50	2	64	14	17	1.40
9151803--9151848	22	2.1	22	87	0	65	54	17	0	28	1.43
9152150--9152197	18	2.6	19	80	12	64	50	0	2	47	1.12
9157418--9157476	24	2.4	25	88	8	93	33	23	5	37	1.77
9158849--9158922	37	2.0	37	97	0	139	41	10	17	29	1.83
9159292--9159325	18	1.9	17	88	5	50	50	0	0	50	1.00
9160599--9160725	57	2.2	57	92	1	211	20	25	16	37	1.93
9169835--9169921	34	2.6	33	80	7	95	28	14	19	36	1.92
9170863--9170888	6	4.3	6	100	0	52	0	30	0	69	0.89
9170902--9171042	69	2.0	69	97	0	264	45	5	8	40	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9175361--9175402	21	2.0	21	85	4	57	33	21	11	33	1.90
9177953--9179050	186	5.8	186	82	4	1150	36	12	9	41	1.75
9185050--9185084	13	2.6	13	90	4	52	77	0	8	14	0.99
9188704--9188736	13	2.5	13	85	14	50	60	0	0	39	0.97
9188703--9188735	11	3.0	11	87	12	50	63	0	0	36	0.95
9188705--9188737	12	2.7	13	86	13	52	60	0	0	39	0.97
9189632--9189657	5	5.2	5	100	0	52	38	0	0	61	0.96
9188516--9189647	582	2.0	571	95	2	2032	42	8	9	39	1.68
9200733--9200785	26	2.0	26	100	0	106	22	30	22	24	1.99
9204755--9204793	18	2.1	19	90	4	62	61	7	0	30	1.24
9204912--9204957	19	2.4	18	79	10	56	50	6	0	43	1.28
9205056--9205162	20	5.5	19	73	10	74	56	4	0	38	1.27
9205057--9205148	28	3.2	29	82	3	105	58	5	1	34	1.28
9205056--9205169	10	11.6	10	70	11	67	57	4	0	36	1.25
9205246--9205310	19	3.4	19	70	16	53	52	4	0	43	1.22
9205504--9205556	28	1.9	27	84	3	70	67	7	0	24	1.16
9205806--9205847	11	4.0	11	81	9	52	35	4	2	57	1.33
9205806--9205914	10	11.0	10	75	17	86	33	3	3	58	1.33
9205800--9205901	19	5.3	19	77	10	91	30	2	4	61	1.31
9205734--9205919	9	19.7	9	69	12	52	30	4	4	61	1.34
9206048--9206086	17	2.3	17	90	0	60	25	0	2	71	0.98
9206067--9206106	14	3.0	13	82	7	53	22	0	5	72	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9206119--9206165	11	4.4	11	81	5	60	48	0	2	48	1.13
9206121--9206162	21	2.0	22	90	4	68	42	0	2	54	1.13
9206320--9206365	25	1.9	23	82	8	56	58	6	4	30	1.43
9209946--9209993	18	2.5	19	80	6	62	39	0	0	60	0.97
9210024--9210091	25	2.7	26	81	9	77	51	2	1	44	1.25
9210030--9210091	24	2.5	24	81	7	70	50	1	1	46	1.20
9223549--9223573	13	1.9	13	100	0	50	8	16	0	76	1.02
9224628--9225033	117	3.5	115	83	6	505	32	8	11	47	1.69
9225211--9225268	28	2.1	28	83	3	73	56	0	0	43	0.99
9225224--9225289	28	2.3	29	85	12	84	56	0	0	43	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117