genome.fa.s101.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  70  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12886780--12886846	26	2.9	22	79	18	73	7	14	0	77	0.97
12886794--12886831	15	2.5	15	91	4	58	7	13	0	78	0.94
12886781--12886837	27	2.2	26	90	3	87	7	12	0	80	0.89
12886781--12886837	13	4.5	13	75	16	57	7	12	0	80	0.89
12886805--12886846	21	2.0	21	90	9	68	7	11	0	80	0.88
12890740--12890888	59	2.6	58	89	4	212	35	16	8	38	1.80
12890796--12891047	134	1.9	135	94	0	443	33	15	8	42	1.77
12890927--12891091	59	2.8	60	85	1	235	33	14	7	44	1.74
12891108--12891272	22	7.3	22	70	13	90	73	3	4	18	1.16
12891117--12891211	5	18.4	5	75	18	88	77	2	5	14	1.03
12891125--12891211	11	7.8	11	76	13	72	78	1	5	14	1.00
12891125--12891212	6	14.7	6	73	13	58	78	1	5	14	0.99
12891235--12891277	4	10.8	4	82	9	52	74	2	2	20	1.04
12892154--12892273	24	5.3	23	74	16	85	65	3	5	25	1.28
12892127--12892258	44	3.0	44	73	19	121	65	3	5	25	1.28
12892341--12892408	25	2.8	25	80	4	59	69	2	5	22	1.24
12892375--12892404	11	2.6	11	94	5	51	80	0	0	20	0.72
12901693--12901718	10	2.6	10	100	0	52	57	23	0	19	1.40
12902006--12902125	23	5.3	23	74	14	99	67	1	5	25	1.20
12902032--12902139	21	4.9	21	74	21	80	67	2	3	25	1.21
12901994--12902125	46	2.9	46	75	15	132	67	2	5	25	1.23
12902033--12902190	23	6.4	26	70	20	99	68	2	3	25	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12902064--12902139	20	3.7	19	70	24	57	68	2	3	25	1.20
12902154--12902193	12	3.4	12	86	3	55	67	2	0	30	1.04
12902437--12902724	41	7.1	41	93	3	428	35	24	16	23	1.95
12903950--12904010	17	4.4	14	69	22	56	8	14	0	77	0.99
12903964--12904010	17	2.9	16	85	14	62	8	14	0	76	1.01
12907896--12908057	59	2.8	58	85	4	211	34	17	8	39	1.80
12907952--12908202	133	1.9	135	93	1	434	33	15	8	42	1.77
12908082--12908246	59	2.8	60	85	1	235	34	14	7	43	1.73
12908280--12908367	6	14.7	6	71	17	58	78	1	5	14	0.99
12908301--12908432	8	15.1	8	70	18	52	75	3	3	18	1.09
12908272--12908366	5	18.4	5	74	20	72	77	2	5	14	1.03
12908267--12908361	32	3.1	31	77	14	108	76	2	6	14	1.07
12908390--12908433	4	10.8	4	85	4	61	77	2	0	20	0.88
12908292--12908432	18	8.0	16	71	21	79	75	3	2	18	1.08
12909305--12909427	44	2.7	46	77	16	123	65	3	4	26	1.29
12909287--12909419	24	5.8	24	72	17	95	66	3	4	26	1.25
12909418--12909459	17	2.6	16	84	3	57	83	0	9	7	0.81
12909485--12909572	25	3.6	24	76	10	63	69	4	4	21	1.25
12909529--12909580	11	4.5	11	79	15	52	78	3	0	17	0.89
12909529--12909580	18	3.0	18	77	8	63	78	3	0	17	0.89
12909529--12909580	23	2.3	23	83	6	61	78	3	0	17	0.89
12923031--12923060	14	2.1	14	93	0	51	46	6	3	43	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12923763--12924121	177	2.0	179	90	4	573	28	22	10	38	1.87
12926457--12926545	25	3.8	24	76	18	73	70	1	6	21	1.16
12926471--12926572	5	19.8	5	78	11	82	75	3	3	16	1.10
12926504--12926579	30	2.5	31	82	6	93	76	5	6	11	1.14
12926994--12927019	11	2.4	11	100	0	52	26	0	15	57	1.38
12927457--12927688	43	5.4	42	78	10	218	42	14	16	25	1.87
12927457--12927688	86	2.7	85	81	9	272	42	14	16	25	1.87
12928120--12928201	34	2.4	36	86	10	109	31	13	15	39	1.87
12928530--12928617	46	2.0	45	84	4	115	37	13	12	36	1.83
12928556--12928620	22	2.8	23	74	4	60	35	13	10	40	1.80
12928931--12928991	24	2.5	24	89	0	86	32	27	19	19	1.96
12933891--12933999	46	2.4	45	75	14	105	71	2	5	20	1.18
12933930--12933970	22	1.9	22	90	5	66	75	2	4	17	1.08
12933891--12933999	5	20.0	5	70	23	53	71	2	5	20	1.18
12933925--12933994	23	3.0	22	72	15	70	74	2	5	17	1.14
12942004--12942042	19	2.0	20	90	5	62	28	0	12	58	1.34
12947729--12947791	33	1.9	33	83	6	83	34	11	20	33	1.88
12947807--12947891	34	2.5	33	73	16	84	32	15	16	35	1.90
12947930--12947964	17	2.1	17	94	0	61	37	5	2	54	1.39
12949160--12949953	322	2.5	318	79	6	834	41	15	10	32	1.82
12949179--12949953	161	4.8	160	79	3	729	41	14	11	32	1.82
12956303--12956717	62	6.7	62	72	9	301	37	12	10	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12956287--12956543	126	2.1	124	88	2	372	37	12	11	38	1.79
12956880--12957199	63	5.1	64	75	12	211	33	14	13	38	1.85
12956892--12957285	62	6.3	63	75	7	291	35	14	12	37	1.84
12956895--12957288	127	3.1	121	81	10	384	35	14	12	37	1.85
12957217--12957484	63	4.3	62	76	10	217	36	11	10	42	1.74
12956277--12957756	755	2.0	750	93	1	2561	36	12	11	39	1.79
12957635--12957812	60	2.9	61	85	3	216	30	16	14	39	1.88
12959953--12959997	21	2.1	21	84	8	56	22	2	6	68	1.24
12961283--12961330	24	2.0	25	83	4	62	29	2	14	54	1.52
12961498--12961569	35	2.1	35	86	0	99	37	19	13	29	1.90
12961750--12961875	65	2.0	65	83	1	164	33	15	8	42	1.78
12962061--12962288	61	3.7	62	71	16	197	30	16	16	36	1.91
12962148--12962292	60	2.3	62	84	6	179	29	17	16	36	1.92
12962039--12962257	122	1.8	122	83	6	275	31	15	16	36	1.90
12964510--12964552	21	2.0	21	81	0	50	60	9	9	20	1.55
12965829--12965883	19	2.9	19	79	12	69	63	0	12	23	1.29
12965894--12965942	10	4.9	10	80	16	57	69	10	4	16	1.32
12965848--12965943	24	4.0	24	72	14	65	68	6	6	18	1.32
12965894--12965950	29	1.9	29	86	10	80	71	10	3	14	1.25
12966392--12966467	38	2.0	38	84	5	100	32	2	13	51	1.54
12967955--12968020	33	1.9	36	84	9	93	51	3	9	36	1.49
12967909--12968028	33	3.7	33	68	23	85	48	4	7	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12968180--12968205	12	2.2	12	100	0	52	38	0	0	61	0.96
12968635--12968675	17	2.4	16	84	11	55	75	4	0	19	0.98
12968681--12968736	24	2.3	23	75	6	58	53	0	3	42	1.18
12969046--12969074	13	2.3	13	94	5	51	17	6	0	75	1.01
12971900--12971952	20	2.5	20	79	11	54	39	1	0	58	1.09
12973438--12973473	18	1.9	19	88	5	56	25	19	8	47	1.77
12984610--12984637	5	5.6	5	100	0	56	17	0	0	82	0.68
12986133--12986177	19	2.3	19	84	3	54	35	24	8	31	1.86
12987829--12987882	27	2.0	27	85	3	74	18	24	7	50	1.72
12993276--12993493	108	2.0	110	88	1	323	41	14	11	32	1.81
12994086--12994141	20	2.8	19	81	10	58	1	16	1	80	0.88
12994075--12994140	24	2.7	24	84	11	73	1	18	1	78	0.90
12994339--12994370	14	2.3	14	94	0	55	0	25	0	75	0.81
12995556--12995601	20	2.3	20	85	7	58	10	4	10	73	1.22
12995604--12995725	48	2.6	45	82	9	147	43	18	8	30	1.79
12995738--12996063	152	2.2	147	84	8	426	44	14	9	31	1.77
12995731--12996061	49	6.7	49	80	7	303	44	13	9	32	1.77
12996402--12996447	21	2.1	22	84	11	60	10	17	0	71	1.13
12997143--12997192	23	2.2	23	82	13	59	14	8	0	78	0.97
12997154--12997217	24	2.7	24	78	2	76	9	9	1	79	1.00
12997157--12997214	30	1.9	30	85	3	80	8	8	1	81	0.96
13006915--13006951	15	2.5	15	91	4	58	27	0	16	56	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13009621--13009659	19	2.1	19	90	0	60	0	20	0	79	0.73
13009634--13009662	15	1.9	15	100	0	58	0	24	0	75	0.80
13012506--13012573	33	2.1	33	88	0	100	35	2	23	38	1.70
13016119--13016149	15	2.1	15	94	5	55	3	0	9	87	0.66
13021253--13021284	15	2.1	15	94	0	55	21	6	25	46	1.74
13021861--13021889	12	2.4	12	100	0	58	0	51	0	48	1.00
13022642--13022684	17	2.6	16	78	7	50	53	0	2	44	1.13
13025765--13025828	9	7.0	9	73	16	51	35	1	0	62	1.05
13025776--13025827	17	2.8	19	83	16	65	36	0	0	63	0.95
13026161--13026190	15	2.0	15	93	0	51	6	3	13	76	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117