genome.fa.s101.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  51  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9431819--9432393	236	2.4	234	80	3	652	42	16	22	18	1.88
9443722--9443746	3	8.3	3	100	0	50	68	0	0	32	0.90
9444035--9444174	56	2.5	55	81	7	165	50	7	3	38	1.49
9448900--9448932	6	5.8	6	92	7	52	54	15	0	30	1.41
9468395--9468432	19	2.1	18	90	5	58	52	7	0	39	1.31
9468576--9468602	2	13.5	2	100	0	54	48	0	0	51	1.00
9472860--9472886	13	2.1	13	100	0	54	22	0	0	77	0.76
9473555--9473587	17	1.9	17	93	0	57	30	18	12	39	1.87
9478862--9478893	15	2.2	15	94	5	57	50	0	0	50	1.00
9480371--9480429	11	5.5	11	75	17	54	57	0	0	42	0.98
9480367--9480429	21	3.2	19	72	14	56	58	0	0	41	0.98
9480373--9480433	30	2.0	30	87	6	88	57	0	0	42	0.98
9480585--9480700	30	3.9	29	83	8	119	40	8	2	48	1.48
9480938--9481042	30	3.5	30	81	2	122	47	0	10	40	1.44
9480938--9481056	60	2.0	60	82	8	145	50	0	10	38	1.42
9481122--9481163	21	2.0	21	81	13	50	57	0	2	40	1.12
9481220--9481256	13	2.6	15	87	8	51	75	2	2	18	1.04
9483340--9483380	21	2.0	21	85	0	55	48	0	0	51	1.00
9484115--9484239	30	4.2	30	79	11	125	40	6	2	50	1.41
9484350--9484423	27	2.7	27	85	10	96	33	5	2	58	1.35
9484462--9484575	30	3.8	30	82	2	113	48	0	8	42	1.40
9493567--9493601	2	17.5	2	100	0	70	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9495828--9495879	13	4.2	13	75	9	54	51	1	0	46	1.12
9497599--9497631	16	1.9	18	88	11	52	51	0	3	45	1.16
9504010--9504092	27	3.1	27	70	14	82	56	4	0	38	1.21
9504019--9504103	29	3.1	29	67	16	81	58	4	0	36	1.19
9504039--9504113	23	3.1	23	70	18	64	60	2	0	37	1.11
9505087--9505132	18	2.6	17	76	6	56	21	6	0	71	1.08
9505353--9505398	21	2.1	21	84	4	56	36	4	0	58	1.18
9506852--9506894	12	3.5	12	79	14	52	51	2	0	46	1.13
9506842--9506911	25	2.7	28	77	20	80	50	2	0	47	1.16
9509150--9509183	15	2.1	15	89	10	50	67	0	11	20	1.21
9511436--9511475	21	1.9	21	85	10	55	85	5	5	5	0.85
9511727--9511760	17	2.0	17	88	0	50	82	0	11	5	0.83
9511804--9511833	8	3.6	8	91	8	51	86	0	10	3	0.67
9527348--9527424	38	2.0	38	94	0	136	27	7	31	33	1.85
9529306--9529433	36	3.6	36	80	6	143	24	14	8	52	1.70
9529566--9529741	51	3.5	51	76	10	155	25	15	7	51	1.70
9529593--9529778	100	1.8	100	82	7	241	24	16	5	53	1.63
9529516--9529864	49	7.1	47	72	17	173	28	14	4	52	1.61
9530349--9530427	40	2.0	40	89	0	122	36	3	21	37	1.72
9534614--9534649	13	2.8	13	82	0	54	36	0	0	63	0.94
9534900--9534935	2	18.0	2	100	0	72	50	0	0	50	1.00
9537530--9537566	19	1.9	19	88	0	56	48	2	0	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9537546--9537605	26	2.3	26	81	15	72	50	1	0	48	1.11
9537536--9537613	25	3.0	25	74	15	70	48	3	0	47	1.20
9539710--9539750	8	5.2	8	85	2	57	41	0	0	58	0.98
9539736--9539787	21	2.5	22	87	6	81	46	0	0	53	1.00
9541059--9541197	65	2.1	65	91	0	224	35	17	12	33	1.88
9545661--9545704	14	3.0	14	80	9	52	47	0	0	52	1.00
9547964--9548001	20	1.9	20	89	10	60	42	5	21	31	1.75
9552728--9552785	20	2.7	22	82	17	77	48	0	0	51	1.00
9554087--9554118	11	3.0	11	95	4	57	25	0	0	75	0.81
9566275--9566337	27	2.4	26	86	7	83	52	1	7	38	1.40
9567259--9567312	26	2.1	26	85	0	72	40	7	5	46	1.55
9567339--9567376	19	2.1	19	85	14	53	57	0	2	39	1.12
9568543--9568567	2	12.5	2	100	0	50	52	0	0	48	1.00
9574806--9574863	2	29.0	2	85	0	71	50	8	0	41	1.33
9577027--9577081	25	2.2	24	87	9	76	54	5	18	21	1.63
9577224--9577267	22	2.0	22	91	8	72	45	13	9	31	1.75
9581348--9581383	17	2.1	18	89	5	56	61	8	0	30	1.26
9582965--9583046	41	2.0	41	87	0	119	21	19	21	36	1.95
9585597--9585623	3	9.0	3	100	0	54	66	0	0	33	0.92
9591383--9591414	2	16.0	2	93	0	55	50	3	0	46	1.17
9597513--9597573	30	2.0	30	96	0	113	40	8	21	29	1.82
9597937--9597963	11	2.5	11	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9608371--9608420	23	2.1	25	85	14	70	52	2	4	42	1.31
9608878--9608902	10	2.5	10	100	0	50	8	0	0	92	0.40
9609052--9609085	10	3.4	10	87	0	50	50	8	0	41	1.34
9610778--9610818	21	2.0	21	90	0	64	21	14	0	63	1.30
9615802--9615911	47	2.3	47	82	3	130	34	17	10	37	1.85
9617268--9617299	2	16.0	2	100	0	64	50	0	0	50	1.00
9617326--9617373	13	3.9	12	83	10	53	81	0	14	4	0.84
9617326--9617373	6	7.8	6	80	13	53	81	0	14	4	0.84
9618608--9618668	30	2.0	30	100	0	122	42	3	16	37	1.64
9627087--9627128	22	1.9	22	85	9	59	33	9	9	47	1.68
9631047--9631088	22	1.9	22	90	0	66	33	11	9	45	1.73
9635425--9635451	4	6.8	4	100	0	54	48	0	0	51	1.00
9636974--9637012	15	2.8	13	82	14	51	23	7	0	69	1.14
9639813--9639852	14	2.9	14	81	3	55	17	5	0	77	0.94
9641167--9641213	15	3.2	14	82	14	51	27	6	0	65	1.16
9641415--9641456	3	14.0	3	100	0	84	66	0	0	33	0.92
9641457--9641494	3	12.7	3	100	0	76	34	0	0	65	0.93
9643323--9643408	27	3.2	27	68	17	72	46	0	4	48	1.22
9643797--9643862	30	2.2	30	79	12	82	25	1	7	65	1.28
9645426--9645465	20	2.0	21	95	5	73	47	0	0	52	1.00
9645578--9645640	30	2.1	31	81	3	74	31	6	3	58	1.39
9645681--9645725	16	2.9	16	90	6	67	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9648364--9648466	20	5.1	20	70	19	61	32	3	11	52	1.56
9648463--9648692	41	5.7	40	86	6	272	32	4	10	53	1.55
9648460--9648793	82	4.1	81	81	8	303	31	4	9	53	1.54
9648548--9648800	41	6.1	41	84	6	250	31	4	9	54	1.53
9648531--9648767	103	2.3	103	88	5	347	31	5	10	53	1.57
9648501--9648793	144	2.0	144	86	2	412	31	4	9	53	1.54
9648774--9648814	21	2.0	21	85	9	57	34	0	2	63	1.08
9648907--9648950	19	2.3	19	84	4	52	29	6	11	52	1.63
9649140--9649216	26	3.1	25	81	9	77	35	5	10	49	1.59
9657169--9657422	42	6.0	42	78	5	226	31	11	16	40	1.84
9657698--9657736	12	3.2	12	88	3	51	20	2	5	71	1.17
9658331--9658378	24	2.0	25	87	4	71	18	33	25	22	1.97
9658404--9658429	3	8.7	3	100	0	52	0	0	30	69	0.89
9658428--9658459	3	10.7	3	100	0	64	31	0	0	68	0.90
9658526--9658575	5	9.8	5	83	12	57	0	16	2	82	0.77
9658527--9658568	9	4.9	9	83	16	54	0	19	0	80	0.70
9658863--9658912	21	2.4	21	86	0	73	38	8	26	28	1.84
9659326--9659367	18	2.3	19	95	4	77	14	0	2	83	0.75
9659327--9659399	30	2.4	30	84	6	94	15	1	4	79	0.95
9659325--9659398	13	5.4	14	78	12	73	13	1	4	81	0.91
9659325--9659397	28	2.7	25	76	19	67	13	1	4	80	0.92
9659446--9659494	25	2.0	25	87	0	71	73	6	4	16	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9670482--9670582	41	2.5	40	80	3	105	33	11	21	32	1.90
9670732--9671395	114	5.9	113	77	5	459	27	26	12	33	1.92
9670951--9671245	107	2.7	111	80	4	328	27	25	13	33	1.93
9671748--9671790	3	14.7	3	90	4	70	27	0	2	69	1.00
9671852--9671888	12	3.4	11	89	10	58	0	16	0	83	0.64
9671850--9671895	21	2.3	21	85	7	60	0	15	2	82	0.76
9672745--9672810	5	13.2	5	77	15	57	18	1	3	77	0.98
9672745--9672815	26	3.0	23	75	18	65	19	1	2	76	0.99
9672867--9672909	22	2.0	22	90	0	68	72	9	4	13	1.26
9673424--9673485	32	1.9	33	86	3	90	35	6	4	53	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117