genome.fa.s101.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  93  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16713566--16713591	4	6.5	4	100	0	52	73	0	0	26	0.84
16716362--16716419	15	3.9	15	83	0	80	22	6	29	41	1.80
16718633--16718667	13	2.7	13	90	0	52	20	2	0	77	0.90
16718633--16718676	23	1.9	23	81	9	54	18	4	0	77	0.94
16720468--16720674	88	2.4	87	82	5	229	36	11	19	32	1.87
16720703--16720757	17	3.1	17	80	10	65	36	7	23	32	1.82
16720706--16720762	19	3.1	17	79	18	53	36	7	21	35	1.80
16720957--16721064	30	3.5	30	70	21	89	44	11	19	25	1.83
16720945--16721118	61	2.8	60	75	5	161	44	9	21	24	1.81
16721174--16721221	24	2.1	23	85	11	64	37	16	18	27	1.92
16721927--16721978	16	3.3	15	76	12	52	11	1	3	82	0.88
16726377--16726410	17	1.9	18	88	5	52	0	38	2	58	1.13
16736129--16736173	15	3.0	15	90	0	72	51	31	0	17	1.46
16738455--16738543	18	4.9	18	79	13	85	2	20	0	77	0.87
16738480--16738522	16	2.8	15	86	6	59	2	16	0	81	0.79
16738488--16738548	29	2.1	29	81	6	70	3	18	1	77	0.99
16743110--16743143	17	2.0	17	94	0	59	38	8	0	52	1.33
16743627--16743713	15	5.7	15	75	6	59	20	6	29	42	1.78
16744916--16744970	20	2.8	20	77	0	65	3	23	0	72	1.00
16745300--16745632	145	2.3	143	81	7	356	42	11	12	33	1.79
16748177--16748220	17	2.6	16	79	10	52	38	0	2	59	1.10
16748458--16748532	39	2.0	36	92	7	123	57	2	6	33	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16756460--16756514	22	2.5	23	75	19	62	20	3	30	45	1.68
16756460--16756514	15	3.7	15	72	13	51	20	3	30	45	1.68
16756791--16756831	3	13.7	3	84	0	55	41	0	24	34	1.55
16756794--16756834	15	2.7	15	96	0	73	43	0	21	34	1.53
16756841--16756869	3	9.7	3	100	0	58	68	31	0	0	0.89
16758239--16758714	144	3.3	144	77	4	332	42	11	12	33	1.79
16758260--16758664	146	2.8	147	78	3	320	40	11	13	34	1.80
16760860--16760926	2	33.5	2	93	0	116	52	0	0	47	1.00
16763334--16763386	25	2.2	24	80	16	65	28	5	9	56	1.54
16763334--16763386	23	2.2	23	83	12	63	28	5	9	56	1.54
16763345--16763392	23	2.0	26	88	12	75	25	4	12	58	1.52
16768200--16768302	6	17.2	6	75	13	70	5	16	0	76	1.03
16768201--16768247	14	3.5	14	77	16	55	6	17	0	76	0.98
16768238--16768274	10	3.6	10	92	3	56	0	13	2	83	0.74
16768200--16768273	20	3.7	19	77	10	76	4	14	1	79	0.94
16768238--16768302	29	2.3	28	84	5	78	4	15	1	78	0.99
16768682--16768758	34	2.5	31	78	17	88	6	16	1	75	1.08
16768680--16768719	13	3.3	12	83	10	55	10	15	0	75	1.05
16768679--16768725	24	2.0	24	83	8	60	10	14	0	74	1.07
16768682--16768758	32	2.5	30	80	15	86	6	16	1	75	1.08
16769395--16769470	10	7.4	10	77	12	57	0	26	1	72	0.93
16769410--16769491	20	4.2	20	76	11	80	0	24	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16769410--16769497	41	2.1	42	80	14	103	0	26	0	73	0.83
16769427--16769481	18	3.0	18	86	7	67	0	20	0	80	0.72
16769417--16769476	11	5.6	11	78	13	72	0	21	0	78	0.75
16769449--16769495	17	2.6	18	86	13	69	0	23	0	76	0.78
16769417--16769512	30	3.1	30	85	10	115	1	22	2	73	0.99
16769439--16769496	18	3.4	17	83	7	55	0	24	0	75	0.80
16774581--16774634	15	3.7	15	83	14	67	25	0	25	48	1.52
16774582--16774634	7	7.3	7	80	6	61	24	0	26	49	1.51
16774970--16774996	3	9.0	3	100	0	54	66	0	0	33	0.92
16775052--16775084	16	2.1	16	94	0	57	60	6	6	27	1.44
16775986--16776017	1	32.0	1	93	0	55	0	3	0	96	0.20
16775985--16776016	16	2.0	16	100	0	64	0	6	0	93	0.34
16779286--16779324	19	2.1	18	85	4	51	66	0	2	30	1.05
16779294--16779665	185	2.0	181	79	5	399	49	6	7	36	1.58
16783416--16783505	45	2.0	45	97	0	171	25	33	12	28	1.92
16784936--16784968	17	1.9	17	93	0	57	30	3	0	66	1.06
16785560--16785612	24	2.4	22	74	20	56	32	0	1	66	1.03
16786299--16786338	19	2.2	18	86	4	53	67	0	2	30	1.04
16786498--16786573	37	2.0	39	92	5	129	57	2	7	31	1.41
16786498--16786557	18	3.3	18	72	19	61	61	1	6	30	1.31
16786774--16786838	32	2.1	30	91	5	103	56	9	3	30	1.46
16788383--16788780	58	6.8	57	86	7	548	34	12	7	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16788383--16788784	177	2.3	174	87	8	575	34	12	7	45	1.71
16788834--16788868	6	6.2	6	90	9	56	88	0	0	11	0.51
16788834--16788868	11	3.1	11	95	4	61	88	0	0	11	0.51
16788818--16788868	17	3.0	17	82	8	59	82	0	5	11	0.83
16789428--16789477	26	2.0	25	92	4	82	44	18	4	34	1.68
16789885--16790007	8	15.9	8	70	27	56	62	3	1	32	1.21
16789881--16790017	16	8.6	16	68	21	60	63	3	1	31	1.20
16790013--16790207	98	2.0	98	95	1	356	43	17	18	20	1.88
16790340--16790754	41	10.1	41	92	2	665	36	23	16	22	1.94
16791759--16791884	25	5.0	25	88	10	193	11	11	0	76	1.03
16791759--16791881	8	14.6	8	89	9	167	11	11	0	77	1.00
16802289--16802805	56	9.0	55	86	10	680	34	11	7	46	1.68
16802817--16802885	8	8.9	8	78	15	65	82	0	0	17	0.67
16802816--16802899	11	6.7	13	72	19	72	80	0	2	16	0.81
16802810--16802886	18	4.2	17	85	11	100	81	0	1	16	0.75
16802817--16802893	24	3.2	25	87	9	106	81	0	1	16	0.75
16803205--16803247	19	2.2	20	83	4	52	27	18	27	25	1.98
16803824--16803972	11	12.9	11	69	20	65	65	3	1	30	1.17
16803829--16803963	8	17.6	8	69	27	57	63	2	1	31	1.18
16803830--16803973	56	2.6	56	75	14	136	63	3	1	31	1.19
16803828--16803973	16	9.2	16	68	22	71	64	3	1	30	1.18
16804283--16804331	7	6.6	8	81	13	52	22	0	34	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16804283--16804331	15	3.3	15	82	5	64	22	0	34	42	1.54
16805299--16805344	19	2.6	18	83	10	58	2	15	2	80	0.91
16811126--16811162	2	18.5	2	94	0	65	48	0	0	51	1.00
16815143--16815177	3	11.7	3	100	0	70	34	31	0	34	1.58
16815456--16815510	15	3.7	15	72	13	51	45	30	3	20	1.68
16815456--16815510	22	2.5	22	77	16	60	45	30	3	20	1.68
16815442--16815509	29	2.3	30	87	5	95	45	30	4	19	1.70
16815486--16815554	35	1.9	36	85	8	97	42	37	2	17	1.64
16822514--16822548	3	11.7	3	100	0	70	68	0	0	31	0.90
16825417--16825491	38	2.0	38	89	0	114	42	5	9	42	1.59
16826603--16826659	27	2.1	27	100	0	114	47	7	3	42	1.47
16826610--16826667	27	2.1	27	87	0	80	50	6	3	39	1.46
16829063--16829102	15	2.6	15	80	4	53	10	15	0	75	1.05
16829857--16829892	19	1.9	19	94	5	65	16	19	8	55	1.66
16830095--16830135	21	1.9	22	90	5	66	43	14	7	34	1.73
16834753--16834826	38	1.9	38	86	5	105	32	8	2	56	1.43
16835099--16835132	17	2.0	17	88	0	50	82	0	0	17	0.67
16835079--16835166	45	1.9	45	81	6	106	73	4	1	20	1.07
16835458--16835504	22	2.0	24	84	8	62	48	0	6	44	1.28
16837391--16837784	141	2.7	142	76	8	377	36	11	9	42	1.73
16838274--16838331	22	2.5	22	83	10	64	67	1	29	1	1.11
16839206--16839238	16	2.1	16	94	0	57	27	6	6	60	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16839292--16839326	3	11.3	3	93	6	61	34	0	0	65	0.93
16845033--16845108	31	2.8	26	76	20	75	27	5	10	56	1.54
16848514--16848558	20	2.3	20	88	3	65	82	2	13	2	0.86
16850624--16850726	6	17.2	6	73	13	52	5	17	1	74	1.10
16850645--16850726	27	2.9	29	80	9	87	4	17	2	75	1.08
16851840--16851902	6	10.3	6	73	21	51	0	19	0	80	0.70
16851818--16851890	19	3.7	19	85	9	85	0	21	1	76	0.86
16851845--16851922	13	6.3	12	75	18	63	0	21	0	78	0.76
16851832--16851905	25	3.0	24	84	11	96	0	21	0	78	0.75
16851850--16851923	30	2.4	31	86	6	105	0	22	0	77	0.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117