genome.fa.s101.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  13  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1358038--1358131	49	1.9	49	97	0	179	50	3	6	40	1.44
1358153--1358192	20	1.9	22	90	10	66	42	0	0	57	0.98
1358153--1358201	20	2.3	21	86	10	64	40	0	0	59	0.98
1358498--1358532	2	17.5	2	100	0	70	0	0	48	51	1.00
1360311--1360365	20	2.8	20	77	2	58	61	1	3	32	1.24
1360338--1360375	20	1.9	20	84	10	51	63	0	5	31	1.17
1362274--1362310	19	1.9	19	88	0	56	51	0	10	37	1.37
1362606--1362704	49	2.0	49	94	3	173	30	13	18	38	1.88
1362943--1362967	11	2.3	11	100	0	50	44	0	0	56	0.99
1363704--1363731	11	2.5	11	100	0	56	46	14	21	17	1.84
1363835--1363900	4	17.0	4	81	12	75	22	4	1	71	1.13
1363821--1363900	12	6.9	11	73	12	63	23	3	1	71	1.10
1365469--1365669	63	3.2	63	70	13	187	33	13	13	39	1.84
1365478--1365724	126	2.0	125	93	0	422	32	12	13	41	1.82
1365596--1365983	187	2.1	188	86	2	541	35	12	11	40	1.80
1366762--1366805	12	3.7	12	87	0	70	20	11	29	38	1.87
1366743--1366810	24	2.5	28	75	22	81	20	11	26	41	1.87
1366756--1366810	24	2.3	24	100	0	110	21	12	27	38	1.90
1369076--1369100	12	2.1	12	100	0	50	76	8	0	16	1.02
1369134--1369650	120	4.3	120	90	3	746	32	13	7	46	1.72
1369134--1369654	60	8.8	60	84	6	647	33	13	7	45	1.72
1369777--1369811	16	2.2	16	90	5	54	80	2	2	14	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1370340--1370389	26	1.9	26	88	8	75	46	14	4	36	1.63
1370862--1370962	16	6.6	16	67	25	58	62	5	0	31	1.19
1371146--1371209	1	64.0	1	74	0	56	3	0	9	87	0.64
1371146--1371209	18	3.4	18	82	6	83	3	0	9	87	0.64
1371216--1371973	42	18.1	41	90	3	1174	35	23	17	23	1.96
1371216--1371973	125	6.0	125	94	0	1257	35	23	17	23	1.96
1373222--1373267	10	4.7	10	91	5	76	0	15	0	84	0.62
1373222--1373265	19	2.3	19	100	0	88	0	13	0	86	0.57
1373222--1373265	9	4.8	9	91	5	70	0	13	0	86	0.57
1377102--1377126	12	2.1	12	100	0	50	76	8	0	16	1.02
1377161--1377756	58	10.0	58	75	17	492	31	13	7	47	1.71
1377161--1377743	61	9.8	58	76	16	502	31	13	7	47	1.72
1377759--1377805	16	3.0	15	84	15	51	76	0	6	17	0.98
1377759--1377811	18	3.0	18	78	13	56	77	0	5	16	0.96
1377759--1377850	35	2.6	36	75	13	93	72	2	8	16	1.19
1377785--1377845	18	3.4	18	71	15	54	73	3	9	13	1.20
1378402--1378457	26	2.2	25	84	12	78	42	17	3	35	1.67
1378916--1379026	20	5.7	19	71	20	61	63	5	0	31	1.17
1378930--1379030	16	6.6	16	69	23	58	61	5	0	32	1.20
1379727--1379777	20	2.5	21	81	6	70	25	7	5	60	1.47
1380634--1380794	64	2.6	63	78	9	177	37	16	13	32	1.88
1380634--1380889	126	2.0	126	79	5	277	35	16	12	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1384025--1384074	17	2.9	17	88	5	75	4	10	4	82	0.94
1384353--1384377	2	12.5	2	100	0	50	48	0	0	52	1.00
1386097--1386147	9	5.4	9	80	17	59	9	13	0	76	1.02
1386097--1386137	21	2.0	21	95	0	73	9	12	0	78	0.98
1386115--1386145	8	3.8	8	95	4	53	9	9	0	80	0.90
1386115--1386147	17	1.9	17	100	0	66	9	12	0	78	0.95
1386196--1386264	3	23.3	3	86	8	97	33	0	1	65	1.02
1387253--1387307	16	3.5	16	75	20	62	74	1	1	21	1.01
1387252--1387313	16	3.8	17	72	20	60	74	1	1	22	1.00
1387250--1387307	32	1.9	30	86	10	82	75	1	1	20	0.97
1387256--1387316	11	5.7	11	70	25	51	73	1	1	22	1.01
1387250--1387317	31	2.2	32	84	7	95	76	1	1	20	0.94
1391474--1391538	33	2.0	33	90	0	103	23	13	23	40	1.90
1391473--1391951	39	12.3	39	76	6	373	25	12	20	41	1.87
1391473--1391951	79	6.2	78	82	3	515	25	12	20	41	1.87
1391902--1391984	40	2.1	39	81	2	94	28	13	16	40	1.86
1393184--1393250	4	16.0	4	75	20	50	71	0	4	23	1.04
1397137--1397292	52	3.0	53	89	3	219	25	24	8	41	1.84
1397317--1397346	11	2.7	11	100	0	60	53	26	0	20	1.46
1397473--1397506	17	1.9	18	88	5	52	61	2	8	26	1.40
1397466--1397569	52	2.0	52	88	3	156	47	2	17	32	1.62
1400140--1400223	42	2.0	42	97	0	159	30	13	23	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1400518--1400604	42	2.0	43	95	2	158	34	4	8	52	1.51
1408656--1408701	6	7.7	6	92	0	74	19	2	34	43	1.63
1409622--1409653	11	2.9	11	95	0	55	25	0	28	46	1.53
1409678--1409834	52	3.0	53	88	3	230	39	8	26	26	1.84
1410365--1410419	25	2.2	25	77	6	58	32	10	38	18	1.85
1410451--1410487	18	2.0	19	89	5	58	35	13	32	18	1.90
1410658--1410689	11	2.9	11	95	0	55	25	0	28	46	1.53
1410714--1410869	52	3.0	53	87	3	219	41	8	24	26	1.83
1411401--1411455	25	2.2	25	77	6	58	32	10	38	18	1.85
1411694--1411725	11	2.9	11	95	0	55	25	0	28	46	1.53
1411751--1411905	52	3.0	53	87	3	217	40	8	24	26	1.83
1413798--1414532	144	5.2	144	92	3	1175	33	17	23	25	1.96
1414125--1414532	134	3.0	135	91	3	620	33	18	24	24	1.97
1413798--1414532	278	2.6	279	91	2	1166	33	17	23	25	1.96
1417543--1417628	39	2.2	38	91	2	136	44	5	5	44	1.52
1417565--1417647	38	2.1	39	82	4	96	48	6	7	38	1.56
1417922--1417955	13	2.7	13	86	4	52	58	0	0	41	0.98
1418160--1418186	14	1.9	14	100	0	54	40	0	14	44	1.46
1419758--1420003	137	1.8	132	86	4	357	51	5	2	39	1.40
1419963--1419997	18	1.9	18	88	0	52	57	0	0	42	0.99
1425458--1425493	17	2.1	18	89	5	56	44	2	0	52	1.15
1427732--1428071	58	5.9	56	86	6	477	33	13	7	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1427732--1428062	115	2.9	115	90	4	508	34	13	7	44	1.73
1428075--1428116	22	1.9	22	85	9	59	71	2	11	14	1.24
1428098--1428213	18	6.5	17	69	17	56	72	3	4	19	1.16
1428098--1428165	17	4.4	16	71	17	63	76	1	7	14	1.07
1428190--1428214	13	1.9	13	100	0	50	80	4	0	16	0.87
1428565--1428607	20	2.2	20	82	0	50	34	9	25	30	1.87
1429177--1429262	4	20.8	4	72	19	61	68	3	0	27	1.06
1429149--1429260	29	3.8	29	72	23	90	66	5	0	26	1.18
1429274--1429358	3	28.7	3	76	17	63	71	3	1	23	1.08
1429178--1429358	12	14.3	12	69	20	70	68	3	1	27	1.12
1429522--1429591	1	70.0	1	76	0	68	1	1	8	88	0.63
1429522--1429591	7	9.4	8	81	10	78	1	1	8	88	0.63
1429532--1429590	19	2.9	19	87	12	75	1	1	8	88	0.66
1429522--1429591	22	3.2	22	87	4	106	1	1	8	88	0.63
1429599--1429987	41	9.4	41	88	6	540	37	23	16	22	1.94
1429599--1430153	205	2.6	213	86	9	756	36	23	17	22	1.94
1429970--1430005	18	2.0	18	100	0	72	27	33	22	16	1.95
1429928--1430047	60	2.0	60	98	0	231	35	26	17	20	1.94
1429988--1430153	41	4.0	41	96	1	296	35	24	18	21	1.96
1429846--1430129	143	2.0	141	93	4	491	35	24	18	21	1.95
1429805--1430153	184	1.9	183	92	2	594	36	23	18	22	1.95
1431390--1431448	8	8.1	7	78	10	57	5	15	0	79	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1431408--1431470	17	3.3	19	80	19	69	3	15	0	80	0.83
1431400--1431451	17	2.9	17	88	5	77	1	15	0	82	0.75
1431400--1431451	9	5.8	9	80	15	63	1	15	0	82	0.75
1431433--1431476	23	1.9	23	81	9	54	6	18	2	72	1.17
1431810--1431838	10	2.7	11	94	5	51	17	0	0	82	0.66
1435364--1435543	54	3.3	54	91	6	299	37	11	8	42	1.72
1435364--1435543	55	3.3	55	91	4	301	37	11	8	42	1.72
1439093--1439552	161	2.9	161	92	2	745	40	17	13	28	1.88
1439572--1439610	14	2.8	14	100	0	78	84	5	0	10	0.76
1439629--1439672	15	2.9	16	86	6	65	0	31	45	22	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117