genome.fa.s101.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  59  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10964547--10964576	14	2.1	14	93	0	51	23	6	0	70	1.11
10965958--10966143	60	3.2	58	80	7	214	51	6	10	31	1.63
10966169--10966214	23	2.0	23	91	0	74	32	6	15	45	1.71
10969137--10969183	12	3.8	12	83	10	60	34	0	2	63	1.06
10969403--10969431	2	14.5	2	100	0	58	51	0	0	48	1.00
10978416--10978529	57	2.0	57	92	0	192	35	17	13	33	1.88
10978500--10978877	189	2.0	187	85	3	508	40	20	13	25	1.89
10988206--10988249	17	2.6	17	77	0	52	34	0	4	61	1.16
10989431--10989566	19	6.7	20	66	20	68	47	29	1	22	1.60
10989434--10989494	26	2.4	25	81	8	68	49	27	0	22	1.50
10989612--10989682	7	10.6	7	70	11	51	49	29	0	21	1.50
10993842--10993876	14	2.5	14	90	0	52	11	14	0	74	1.08
10995077--10995156	29	2.8	28	77	11	83	50	0	2	47	1.14
10995088--10995172	43	2.0	43	84	9	111	51	0	2	45	1.13
10995084--10995141	9	6.8	9	75	9	50	51	0	1	46	1.11
10995370--10995426	20	2.8	20	78	5	62	45	21	3	29	1.68
10997818--10997979	61	2.6	62	80	5	186	45	4	9	39	1.59
10997914--10997978	26	2.5	26	84	2	76	49	3	7	40	1.47
10998598--10998664	5	12.6	5	79	17	73	74	4	19	1	1.07
11009657--11009687	15	2.1	15	100	0	62	61	12	0	25	1.32
11010361--11010395	8	4.4	8	92	0	61	37	0	14	48	1.44
11011879--11011924	20	2.3	20	84	0	56	67	4	0	28	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11011898--11011944	22	2.1	22	88	0	67	70	10	0	19	1.16
11011957--11012032	17	4.5	17	77	9	75	57	5	5	31	1.43
11011962--11012032	8	8.5	8	78	9	61	61	4	4	29	1.33
11012108--11012181	17	4.2	17	72	8	58	36	0	5	58	1.21
11012101--11012181	26	3.0	26	76	16	85	35	0	6	58	1.23
11012095--11012181	18	4.9	18	74	12	65	37	0	6	55	1.27
11015679--11015726	3	16.3	3	95	4	89	31	0	0	68	0.90
11020942--11020972	13	2.4	13	94	0	53	12	6	3	77	1.08
11021666--11021775	18	6.0	18	70	17	68	46	10	8	34	1.69
11021714--11021744	16	1.9	16	93	0	53	41	12	9	35	1.76
11022092--11022165	19	3.5	19	70	21	58	50	12	5	32	1.62
11022297--11022342	23	2.0	23	87	4	67	65	8	0	26	1.21
11022344--11022404	29	2.1	30	93	3	106	54	8	6	31	1.56
11022387--11022531	24	6.2	24	74	15	142	53	8	3	33	1.49
11022424--11022531	45	2.4	45	89	6	155	53	9	2	34	1.47
11022472--11022517	20	2.2	20	80	3	56	54	10	2	32	1.47
11022402--11022531	47	2.9	43	82	10	154	53	8	3	34	1.47
11023489--11023767	43	6.5	43	83	2	312	38	17	14	29	1.89
11023489--11023767	128	2.2	128	83	2	353	38	17	14	29	1.89
11024065--11024089	13	1.9	13	100	0	50	40	12	24	24	1.88
11024409--11024443	13	2.7	13	90	0	61	42	8	25	22	1.82
11025003--11025031	13	2.2	13	100	0	58	24	17	0	58	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11031262--11031293	16	2.0	16	93	0	55	40	12	12	34	1.81
11031447--11031511	19	3.3	19	82	16	78	52	12	4	30	1.59
11031458--11031518	19	3.0	20	81	11	72	54	13	4	27	1.59
11031453--11031523	21	3.4	21	77	13	74	53	11	4	30	1.55
11031532--11031594	32	2.0	32	93	0	108	53	11	4	30	1.56
11031549--11031619	24	3.1	22	71	18	56	54	12	5	26	1.60
11031615--11031774	20	9.0	20	62	26	65	55	10	5	29	1.55
11031581--11031771	32	6.2	32	83	11	238	54	11	5	28	1.59
11031661--11031707	24	2.0	24	87	4	69	59	10	4	25	1.49
11031629--11031739	56	2.0	55	91	1	177	56	10	4	27	1.53
11031603--11031771	88	1.9	88	93	0	293	55	11	5	28	1.57
11031755--11031857	24	4.3	24	79	7	111	56	9	1	32	1.43
11031779--11031896	47	2.6	46	85	5	141	54	10	3	32	1.51
11032566--11032603	12	2.9	13	88	11	60	76	5	0	18	0.97
11035028--11035093	26	2.5	26	85	4	89	46	3	1	48	1.26
11035068--11035162	18	5.6	16	69	24	54	50	1	1	47	1.15
11035113--11035160	19	2.6	18	86	6	60	54	0	0	45	0.99
11035215--11035251	17	2.2	17	90	0	56	43	2	0	54	1.14
11035167--11035300	44	3.0	45	75	20	113	47	2	0	49	1.22
11035261--11035303	17	2.7	16	89	10	70	46	2	0	51	1.13
11035601--11035908	166	1.8	166	83	1	382	46	5	6	41	1.53
11036875--11036905	7	4.4	7	100	0	62	83	0	0	16	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11036946--11037002	29	2.0	27	90	6	87	47	1	0	50	1.11
11037891--11037952	26	2.5	25	76	10	65	46	1	0	51	1.10
11040498--11040572	38	2.0	38	89	5	116	38	13	5	42	1.67
11043295--11043343	18	2.8	18	84	6	66	83	0	12	4	0.77
11047503--11047536	4	8.2	4	87	6	50	70	0	0	29	0.87
11049368--11049408	21	2.0	21	90	0	64	19	2	2	75	1.03
11049818--11050083	57	4.7	57	74	2	185	41	18	16	23	1.89
11049823--11050068	114	2.2	114	81	2	280	41	17	17	23	1.90
11055022--11055113	46	2.0	46	82	4	112	54	9	7	28	1.60
11057700--11057737	20	1.9	20	100	0	76	21	34	15	28	1.94
11059099--11059153	17	3.3	17	80	7	60	61	1	1	34	1.17
11060556--11060586	16	1.9	16	93	0	53	38	9	41	9	1.71
11061341--11061423	39	2.1	39	81	6	94	38	2	1	57	1.19
11080663--11080703	8	5.0	8	88	5	55	34	0	0	65	0.93
11080662--11080716	25	2.2	25	87	6	76	36	0	3	60	1.15
11081374--11081419	21	2.2	21	84	7	58	63	15	0	21	1.31
11082009--11082310	42	7.4	42	82	4	332	41	18	12	26	1.87
11081987--11082310	81	4.0	81	83	4	373	41	19	12	26	1.88
11082009--11082306	123	2.4	119	83	6	355	41	19	12	26	1.87
11082647--11082686	21	1.9	21	100	0	80	35	15	10	40	1.80
11082625--11082842	79	2.7	79	91	0	337	32	15	11	40	1.83
11082806--11082987	42	4.4	41	69	16	135	34	14	10	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11082806--11082899	21	4.5	21	82	5	118	35	15	9	39	1.81
11082727--11082987	122	2.1	121	85	3	355	34	14	11	39	1.82
11082930--11082987	21	2.8	21	100	0	116	37	13	10	37	1.79
11082647--11083087	100	4.4	99	75	9	428	33	16	11	39	1.84
11083028--11083089	21	3.0	21	85	0	88	35	16	9	38	1.81
11083420--11083465	23	2.0	23	87	8	67	28	23	8	39	1.84
11084276--11084325	16	3.2	15	91	8	82	12	14	0	74	1.09
11084276--11084324	8	6.4	7	86	13	62	12	14	0	73	1.10
11084276--11084365	10	10.4	8	89	10	85	11	12	0	76	1.02
11084276--11084364	15	5.6	17	75	16	93	11	12	0	76	1.02
11084297--11084399	40	2.7	38	80	16	108	8	12	0	77	1.03
11084281--11084384	20	5.7	19	85	9	105	9	12	0	76	1.06
11084371--11084395	12	2.1	12	100	0	50	0	16	0	84	0.63
11084312--11084399	20	4.6	18	82	5	86	7	12	1	78	1.01
11084304--11084365	10	6.4	10	96	3	110	9	9	0	80	0.90
11084711--11084758	24	2.1	22	88	7	69	4	18	2	75	1.07
11088858--11088886	15	1.9	15	100	0	58	34	3	0	62	1.12
11091691--11091733	13	3.1	14	83	12	54	72	2	4	20	1.14
11091773--11091813	22	1.9	22	85	5	57	68	4	9	17	1.35
11091826--11091857	5	6.4	5	92	0	55	78	3	0	18	0.89
11092252--11092292	21	1.9	22	90	5	66	9	12	2	75	1.13
11093021--11093048	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11093216--11093254	13	2.9	13	84	3	51	2	12	0	84	0.72
11094411--11094463	24	2.2	24	86	3	72	66	7	0	26	1.18
11106415--11106620	52	4.1	50	79	9	222	31	14	20	33	1.93
11106415--11106620	103	2.1	98	87	6	288	31	14	20	33	1.93
11106590--11106653	33	1.9	33	96	0	119	25	25	23	26	2.00
11106535--11106690	84	1.8	84	85	6	217	30	18	22	28	1.97
11106623--11107249	103	6.1	102	82	5	589	28	12	22	36	1.90
11106623--11107249	50	12.3	50	79	9	615	28	12	22	36	1.90
11108729--11108764	19	1.9	19	88	5	56	63	0	0	36	0.94
11116085--11116134	2	25.0	2	100	0	100	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117