genome.fa.s101.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167926.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_19, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20060819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   

This is table  98  of  117  ( 13965 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17476422--17476474	26	2.0	26	82	7	63	30	22	16	30	1.96
17478163--17478216	27	2.0	26	85	3	72	31	24	16	27	1.96
17479061--17479114	27	2.0	27	92	3	92	27	25	18	27	1.98
17481207--17481271	26	2.5	26	85	7	89	26	29	20	24	1.99
17479428--17483804	886	4.9	884	86	3	5580	26	24	23	25	2.00
17482097--17482149	26	2.0	26	92	0	88	28	24	18	28	1.98
17482977--17483057	26	3.1	26	83	0	117	29	22	19	28	1.98
17483071--17485811	718	3.8	708	85	6	3397	27	23	22	26	2.00
17485279--17486340	529	2.0	530	89	1	1637	29	21	21	27	1.98
17487269--17487320	26	2.0	25	96	3	95	26	23	21	28	1.99
17488886--17488937	26	2.0	26	96	0	95	26	25	19	28	1.98
17488911--17490325	719	2.0	717	87	2	2063	26	23	22	26	2.00
17490484--17490536	26	2.0	26	85	0	70	24	20	22	32	1.98
17492097--17492149	26	2.0	26	92	0	88	30	22	16	30	1.96
17493010--17493059	26	1.9	26	95	0	91	26	24	20	30	1.98
17492263--17493865	803	2.0	802	84	4	2081	26	24	23	25	2.00
17493066--17496928	895	4.3	896	86	3	5111	25	24	24	25	2.00
17495599--17495651	26	2.0	26	96	0	97	24	26	20	28	1.99
17501257--17501309	26	2.0	26	96	0	97	26	18	26	28	1.98
17501794--17501867	26	2.8	26	93	0	130	28	16	27	28	1.97
17502714--17502766	26	2.0	26	100	0	106	26	20	26	26	1.99
17501815--17503543	892	1.9	897	84	5	2331	24	23	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17503601--17506104	873	2.9	866	87	5	3345	25	23	24	26	2.00
17507670--17507719	26	1.9	26	91	0	82	28	20	22	30	1.98
17510180--17510229	26	1.9	26	91	0	82	28	18	24	30	1.97
17509389--17513116	903	4.2	898	86	2	4939	25	24	24	25	2.00
17511977--17512029	26	2.0	26	88	0	79	26	24	24	24	2.00
17512873--17512925	26	2.0	26	85	7	72	28	15	24	32	1.95
17512899--17513275	159	2.4	159	86	0	495	21	27	30	20	1.98
17514825--17514877	26	2.0	26	92	0	88	30	16	22	30	1.96
17515729--17515779	26	2.0	26	96	0	93	29	13	27	29	1.94
17516612--17516664	26	2.0	26	96	0	97	28	20	24	26	1.99
17513058--17518488	892	6.1	892	86	3	6997	25	24	24	25	2.00
17517506--17517558	26	2.0	26	92	0	88	28	20	24	26	1.99
17519585--17519637	26	2.0	26	85	0	70	30	16	22	30	1.96
17520469--17520521	26	2.0	26	92	0	88	28	22	24	24	2.00
17523135--17523187	26	2.0	26	96	0	97	28	20	26	24	1.99
17518705--17525710	898	7.8	899	85	4	8785	25	24	24	25	2.00
17525713--17525762	26	1.9	26	95	0	91	30	20	24	26	1.98
17526123--17526162	21	2.0	21	85	5	55	20	10	5	65	1.42
17526611--17526663	26	2.0	26	92	0	88	30	16	22	30	1.96
17528225--17528277	26	2.0	26	92	0	88	30	20	22	26	1.98
17529823--17529874	26	2.0	26	92	0	86	28	17	25	28	1.97
17530616--17530686	26	2.7	26	82	4	90	29	21	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17529552--17531184	804	2.0	816	84	5	2146	25	24	24	25	2.00
17531520--17531572	26	2.0	26	92	0	88	28	18	24	28	1.98
17532408--17532460	26	2.0	26	88	0	79	26	18	32	22	1.97
17530374--17534233	888	4.3	888	86	3	5070	25	24	24	25	2.00
17534546--17534598	26	2.0	26	96	0	97	26	18	26	28	1.98
17535434--17535486	26	2.0	26	88	0	79	28	16	24	30	1.97
17538076--17538128	26	2.0	26	96	0	97	26	18	26	28	1.98
17538969--17539020	26	2.0	26	92	3	88	30	21	21	26	1.98
17540722--17540774	26	2.0	26	100	0	106	26	16	26	30	1.97
17539744--17542740	894	3.4	888	83	4	3777	25	24	24	25	2.00
17542490--17542542	26	2.0	26	92	0	88	28	18	24	28	1.98
17542778--17542830	26	2.0	26	96	0	97	26	18	26	28	1.98
17542448--17543024	288	2.0	288	86	2	818	21	29	28	20	1.98
17543965--17544384	210	2.0	211	89	1	646	25	18	17	38	1.92
17546494--17546546	26	2.0	26	96	0	97	26	18	26	28	1.98
17547385--17547441	25	2.2	27	87	6	82	28	19	26	26	1.99
17544176--17551874	867	8.6	890	78	10	6568	25	24	24	26	2.00
17548281--17548331	26	2.0	26	96	0	93	29	21	21	27	1.99
17549176--17549228	26	2.0	26	88	0	79	28	16	24	30	1.97
17550209--17550258	26	1.9	26	95	0	91	28	20	32	20	1.97
17553325--17553358	12	2.8	12	90	0	50	35	20	32	11	1.89
17553534--17553586	26	2.0	26	92	0	88	28	18	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17554429--17554481	26	2.0	26	96	0	97	26	18	24	30	1.98
17551939--17555726	892	4.2	897	84	5	4724	25	24	25	25	2.00
17557682--17557734	26	2.0	26	96	0	97	26	20	24	28	1.99
17558586--17558633	25	1.9	25	100	0	96	25	20	29	25	1.99
17559482--17559537	26	2.2	26	90	0	85	26	21	25	26	1.99
17555729--17561486	903	6.5	896	84	4	6786	25	24	24	25	2.00
17561251--17561303	26	2.0	26	92	0	88	26	16	26	30	1.97
17562312--17562364	26	2.0	26	92	0	88	30	18	20	30	1.97
17563207--17563259	26	2.0	26	96	0	97	26	20	24	28	1.99
17561436--17565016	886	4.0	899	88	3	5015	25	23	24	26	2.00
17564093--17564145	26	2.0	26	92	0	88	26	18	24	30	1.98
17565702--17565754	26	2.0	26	92	0	88	28	20	22	28	1.99
17566593--17566643	26	2.0	26	100	0	102	29	19	23	27	1.98
17567297--17567457	76	2.1	80	88	6	242	26	42	16	13	1.86
17567575--17567627	26	2.0	26	92	0	88	26	16	26	30	1.97
17568480--17568532	26	2.0	26	96	0	97	26	18	26	28	1.98
17567373--17574734	899	8.2	898	87	2	9813	25	24	24	25	2.00
17570274--17570326	26	2.0	26	92	0	88	26	20	26	26	1.99
17571174--17571244	26	2.7	26	88	0	106	30	15	22	30	1.95
17564961--17574734	900	10.8	912	84	5	10766	25	24	24	25	2.00
17572098--17572150	26	2.0	26	92	0	88	26	20	28	24	1.99
17572995--17573047	26	2.0	26	92	0	88	26	16	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17575489--17575542	26	2.1	26	92	0	90	29	22	22	25	1.99
17575515--17576196	158	4.3	158	85	0	844	22	29	27	20	1.99
17575515--17576196	316	2.2	317	86	0	936	22	29	27	20	1.99
17577525--17577577	26	2.0	26	96	0	97	28	20	24	26	1.99
17578410--17578462	26	2.0	26	92	0	88	28	18	24	28	1.98
17579134--17579186	26	2.0	26	96	0	97	28	20	24	26	1.99
17577786--17579198	724	2.0	723	89	1	2188	26	22	22	28	1.99
17580006--17580058	26	2.0	26	88	0	79	26	20	24	28	1.99
17580887--17580939	26	2.0	26	96	0	97	26	22	24	26	2.00
17578436--17582875	876	5.0	888	84	6	5391	25	23	25	26	2.00
17582664--17582716	26	2.0	26	92	7	90	30	20	24	24	1.99
17582849--17582901	26	2.0	26	96	0	97	26	18	26	28	1.98
17582635--17583057	185	2.3	185	87	1	598	21	28	27	21	1.99
17583748--17583800	26	2.0	26	92	0	88	28	18	22	30	1.98
17586390--17586441	26	2.0	26	84	0	68	28	13	25	32	1.93
17588146--17588198	26	2.0	26	85	0	70	26	18	22	32	1.97
17589054--17589106	26	2.0	26	85	0	70	26	16	26	30	1.97
17587273--17594300	908	7.9	900	86	3	9255	24	24	25	25	2.00
17589948--17590001	26	2.1	26	100	0	108	25	20	25	27	1.99
17592589--17592641	26	2.0	26	92	0	88	28	20	26	24	1.99
17593477--17593529	26	2.0	26	100	0	106	30	20	22	26	1.98
17591719--17594277	888	2.9	891	87	3	3615	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17594981--17595033	26	2.0	26	100	0	106	26	20	26	26	1.99
17595884--17595958	26	2.9	26	95	0	132	30	17	24	28	1.97
17596806--17596858	26	2.0	26	88	0	79	28	24	24	22	2.00
17597708--17597758	26	2.0	26	96	0	93	29	21	21	27	1.99
17594322--17614192	902	21.8	901	76	10	15208	25	24	24	25	2.00
17598613--17598664	26	2.0	25	88	3	77	28	19	23	28	1.98
17601388--17601440	26	2.0	26	92	0	88	26	20	26	26	1.99
17603176--17603228	26	2.0	26	92	0	88	30	18	24	26	1.98
17604961--17605012	26	2.0	26	85	7	70	32	17	23	26	1.96
17605145--17605196	26	2.0	26	92	0	86	28	19	23	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117