genome.fa.s13.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  10  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4191271--4191364	44	2.1	44	88	0	134	28	23	18	29	1.97
4204981--4205018	19	2.0	19	94	0	67	5	18	21	55	1.62
4205158--4205206	22	2.2	22	85	0	71	22	26	42	8	1.81
4205438--4205486	25	2.0	25	88	8	73	26	2	10	61	1.39
4205438--4205492	25	2.2	26	83	6	69	25	1	12	60	1.43
4231275--4231305	7	4.3	7	95	4	53	3	12	0	83	0.75
4231786--4231861	40	1.9	40	84	10	102	23	21	10	44	1.83
4234786--4234824	19	2.1	18	85	4	51	43	17	15	23	1.87
4236219--4236253	18	1.9	18	88	0	52	8	17	0	74	1.06
4238924--4238990	34	1.9	35	90	3	109	34	8	10	46	1.70
4240962--4241042	34	2.4	34	95	0	144	34	14	11	39	1.82
4240971--4241037	20	3.7	19	70	24	63	34	14	10	40	1.81
4246986--4247176	50	3.7	50	78	4	184	24	29	20	26	1.99
4248862--4248901	21	2.0	20	90	5	62	42	0	0	57	0.98
4258224--4258445	113	1.9	114	96	3	412	29	13	10	46	1.76
4260220--4260285	29	2.2	31	78	7	75	62	7	3	27	1.37
4260280--4260317	20	1.9	20	100	0	76	60	7	0	31	1.25
4261992--4262017	10	2.6	10	100	0	52	42	0	7	50	1.31
4262237--4262283	3	15.7	3	86	8	60	61	2	4	31	1.27
4263959--4264539	50	11.6	50	69	5	332	25	20	21	31	1.98
4263915--4264566	100	6.5	100	86	1	869	26	21	21	30	1.98
4265853--4266992	100	11.4	100	87	1	1518	25	21	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4265853--4266992	50	22.8	49	68	8	609	25	21	21	31	1.98
4267860--4267908	17	2.9	16	85	11	62	2	14	2	81	0.87
4270913--4271057	74	2.0	74	91	2	238	33	21	20	24	1.97
4271444--4271474	16	1.9	16	100	0	62	38	0	9	51	1.35
4271912--4271953	3	14.0	3	100	0	84	66	0	0	33	0.92
4272036--4272134	50	2.0	50	97	0	189	38	30	22	9	1.85
4274045--4274097	20	2.7	20	79	2	63	52	1	1	43	1.23
4274266--4274290	11	2.3	11	100	0	50	16	0	0	84	0.63
4274593--4274621	6	4.8	6	100	0	58	68	0	0	31	0.89
4274630--4274662	16	2.0	17	94	5	59	51	0	0	48	1.00
4274773--4274805	3	11.0	3	93	0	57	33	3	0	63	1.10
4274954--4275000	24	1.9	24	83	12	60	57	6	0	36	1.24
4275004--4275155	36	4.3	36	87	4	211	40	9	1	48	1.48
4279709--4279762	20	2.7	20	82	2	63	33	7	1	57	1.37
4281395--4282093	349	2.0	350	99	0	1391	39	12	10	36	1.78
4282739--4282788	21	2.4	21	86	0	64	44	2	4	50	1.32
4285200--4285426	71	3.2	71	88	3	314	29	18	24	26	1.98
4285331--4285540	114	1.8	114	88	2	323	29	19	24	26	1.98
4285445--4285617	72	2.4	73	89	4	253	27	22	24	25	2.00
4285260--4286101	186	4.5	186	86	4	1112	28	19	25	26	1.99
4285640--4285779	71	2.0	71	88	1	210	32	17	23	26	1.96
4285260--4286078	371	2.2	367	86	3	1149	28	19	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4285809--4285988	73	2.5	72	82	6	220	28	18	26	26	1.98
4286293--4286341	14	3.5	14	82	0	62	18	0	34	46	1.49
4286320--4286441	51	2.4	52	93	4	205	22	3	28	45	1.68
4286417--4286531	21	5.5	21	71	9	74	19	2	34	43	1.65
4286493--4286531	20	1.9	21	94	5	71	15	0	33	51	1.44
4286417--4286531	14	7.8	14	71	18	56	19	2	34	43	1.65
4286796--4286892	21	4.5	21	81	1	86	23	0	41	35	1.55
4286820--4286874	7	7.7	7	75	4	56	21	0	45	32	1.52
4286819--4286892	22	3.4	22	83	5	80	24	0	40	35	1.55
4290534--4290739	43	4.8	43	89	0	277	23	17	31	27	1.97
4293443--4293494	23	2.2	24	86	6	72	40	1	0	57	1.10
4295008--4295037	16	1.9	15	93	6	51	46	16	6	30	1.73
4297619--4297649	12	2.6	12	94	0	53	12	48	19	19	1.81
4298915--4298974	25	2.5	23	75	5	57	31	21	26	20	1.98
4303881--4303927	20	2.2	22	85	7	62	40	4	6	48	1.48
4304052--4304094	19	2.2	21	80	16	56	30	2	2	65	1.18
4304051--4304092	18	2.3	19	80	16	52	30	2	2	64	1.19
4305440--4305482	22	2.0	21	86	9	59	11	11	9	67	1.42
4308841--4308956	62	1.9	60	84	5	153	47	4	5	43	1.45
4308936--4308984	20	2.7	18	77	22	57	51	2	2	44	1.24
4309786--4309850	33	2.0	33	90	0	103	24	27	12	35	1.91
4311733--4311767	18	1.9	18	88	0	52	25	8	25	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4312454--4312487	16	2.2	16	89	5	52	44	14	17	23	1.86
4312630--4312655	11	2.4	11	100	0	52	73	0	0	26	0.84
4320895--4320947	18	3.1	17	76	7	54	41	3	0	54	1.18
4323023--4323113	47	1.9	47	97	0	173	27	10	19	41	1.85
4330726--4330777	19	2.7	19	93	0	95	38	15	9	36	1.80
4335200--4335976	389	2.0	388	99	0	1536	29	18	21	30	1.97
4346376--4346491	28	4.2	28	88	2	155	28	19	16	35	1.94
4346781--4346835	25	2.3	24	81	9	67	49	23	3	23	1.66
4346789--4346844	25	2.2	25	93	0	94	44	23	3	28	1.70
4350003--4350206	30	6.9	30	72	2	117	35	14	25	24	1.93
4350054--4350238	89	2.1	90	86	3	257	35	13	27	23	1.92
4349933--4350207	29	9.3	30	72	8	127	38	14	24	22	1.91
4357605--4357763	29	5.4	30	77	6	121	35	16	27	20	1.94
4358173--4358198	13	2.0	13	100	0	52	23	7	23	46	1.78
4365490--4365525	15	2.5	14	86	8	54	44	8	0	47	1.33
4365870--4366082	25	8.6	25	82	4	198	31	18	23	26	1.97
4365870--4366082	99	2.1	100	82	0	257	31	18	23	26	1.97
4365864--4366082	74	2.9	75	82	4	273	31	18	22	26	1.97
4369505--4369591	41	2.1	41	82	4	104	24	21	24	29	1.99
4376905--4376952	20	2.4	20	92	0	78	37	27	0	35	1.57
4382521--4382568	20	2.4	20	96	0	87	39	27	0	33	1.57
4382973--4382999	13	2.1	13	100	0	54	55	7	0	37	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4385725--4385773	25	2.0	25	87	0	71	34	14	18	32	1.91
4388377--4388409	16	2.0	17	94	5	59	12	6	0	81	0.85
4390176--4390224	25	2.0	25	84	8	64	34	14	16	34	1.89
4395359--4395408	17	3.0	17	82	11	59	14	2	2	82	0.86
4395365--4395408	8	5.4	8	79	15	54	13	0	2	84	0.73
4397158--4397201	18	2.5	18	81	3	54	22	2	15	59	1.48
4398498--4398545	20	2.4	20	96	0	87	39	27	0	33	1.57
4401459--4401530	36	2.0	37	86	2	101	8	25	11	55	1.62
4401475--4401586	41	2.8	38	85	5	134	7	27	9	55	1.59
4403022--4403046	13	1.9	13	100	0	50	44	16	8	32	1.76
4403911--4403994	37	2.3	36	83	8	107	41	13	11	33	1.80
4404075--4404116	18	2.3	18	100	0	84	50	26	0	23	1.50
4404046--4404149	51	2.0	51	96	0	190	45	19	3	31	1.68
4408853--4408957	44	2.5	40	70	15	95	32	27	4	35	1.78
4408851--4408960	45	2.6	44	76	8	113	32	27	5	34	1.80
4408939--4408976	16	2.4	16	90	0	58	34	34	0	31	1.58
4410744--4410791	17	2.8	17	84	6	62	54	0	0	45	0.99
4413210--4413238	15	2.0	15	93	6	51	68	0	0	31	0.89
4423379--4423560	59	3.1	59	61	23	139	45	9	11	33	1.74
4423375--4423552	57	3.1	57	60	23	127	44	10	11	33	1.74
4423356--4423587	116	2.0	116	100	0	464	44	12	10	32	1.75
4426474--4426617	50	2.9	50	81	0	162	23	30	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4428686--4428717	16	1.9	17	93	6	57	43	21	0	34	1.53
4432154--4432184	15	2.1	15	100	0	62	32	19	12	35	1.90
4436313--4436502	51	3.8	51	80	4	192	30	24	17	27	1.97
4439293--4439471	96	1.9	96	86	0	259	34	18	11	35	1.87
4442615--4442643	14	2.0	15	93	6	51	6	37	0	55	1.27
4445011--4445158	73	2.0	73	98	0	287	36	14	15	33	1.88
4446684--4446753	36	1.9	36	100	0	140	57	12	2	27	1.50
4449223--4449275	24	2.2	24	93	6	90	32	7	30	30	1.85
4450249--4450286	14	2.7	14	91	0	58	39	5	15	39	1.70
4453755--4454619	432	2.0	432	100	0	1730	31	23	17	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145