genome.fa.s13.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  130  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42635814--42635855	7	6.0	7	86	10	59	14	16	2	66	1.35
42635846--42635875	15	2.0	15	93	0	51	23	26	3	46	1.68
42640214--42640255	19	2.3	19	87	4	59	76	7	2	14	1.10
42642704--42642754	3	17.0	3	100	0	102	66	0	0	33	0.92
42645755--42645799	17	2.6	18	76	16	51	44	0	20	35	1.51
42646265--42646360	3	31.3	3	74	14	72	27	2	6	64	1.28
42646469--42646516	14	3.4	14	83	8	62	31	2	2	64	1.16
42660614--42660823	75	2.8	75	89	1	305	31	27	18	21	1.97
42660696--42660820	33	3.5	33	74	17	115	36	28	15	20	1.93
42665774--42665799	8	3.2	8	100	0	52	15	0	0	84	0.62
42667107--42667150	22	1.9	24	86	9	65	40	4	4	50	1.43
42670630--42670794	43	3.8	43	76	7	147	29	30	18	21	1.97
42675318--42675365	21	2.3	21	88	0	69	47	14	27	10	1.76
42676931--42676974	9	4.6	9	83	13	52	11	6	0	81	0.86
42676931--42676974	20	2.2	20	84	15	56	11	6	0	81	0.86
42677287--42677326	18	2.2	19	86	8	57	35	22	7	35	1.82
42677340--42677392	14	3.8	14	76	0	52	43	47	0	9	1.36
42677340--42677392	21	2.5	20	76	8	52	43	47	0	9	1.36
42677621--42677653	15	2.3	15	89	5	50	33	33	3	30	1.73
42677946--42678659	113	6.3	113	89	1	1043	30	24	22	22	1.99
42677946--42678659	227	3.1	224	88	2	1068	30	24	22	22	1.99
42678628--42678762	40	3.4	39	73	9	114	23	19	20	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42679545--42679639	40	2.4	40	84	5	122	37	27	17	16	1.92
42679818--42680544	114	6.4	114	89	1	1057	35	18	20	25	1.95
42681061--42681122	14	4.3	14	75	6	52	16	0	40	43	1.48
42681442--42681484	20	2.1	21	86	4	61	37	0	6	55	1.27
42684838--42684942	45	2.3	44	85	11	133	32	6	18	42	1.76
42684883--42684907	10	2.5	10	100	0	50	28	8	20	44	1.79
42684924--42684999	29	2.7	29	97	2	145	27	11	21	39	1.88
42685356--42685428	21	3.3	21	68	17	67	28	5	6	58	1.46
42686139--42686222	9	9.8	9	68	10	50	44	20	1	34	1.59
42686076--42686160	25	3.3	24	69	15	71	40	15	3	41	1.64
42686385--42686461	24	3.6	21	73	14	68	51	19	1	27	1.54
42686399--42686453	12	4.8	12	88	4	78	52	16	1	29	1.54
42686392--42686460	24	3.0	24	87	8	92	53	17	1	27	1.52
42686399--42686460	12	5.5	11	87	11	74	53	16	1	29	1.52
42686527--42686634	9	12.6	9	75	16	86	47	21	2	28	1.65
42686540--42686602	25	2.5	25	78	0	72	46	22	4	26	1.72
42686407--42686587	96	1.9	94	83	7	233	50	19	2	27	1.59
42686527--42686634	16	6.3	17	78	11	89	47	21	2	28	1.65
42691910--42691960	21	2.4	21	93	0	84	35	17	45	1	1.60
42692360--42692477	44	2.7	44	81	3	114	33	17	26	22	1.96
42705135--42705179	24	1.9	23	81	4	54	37	11	4	46	1.60
42711360--42711426	34	1.9	35	90	3	109	44	14	7	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42712956--42713047	40	2.3	40	90	0	139	30	15	30	23	1.95
42713106--42713202	41	2.4	41	84	1	115	18	14	26	40	1.89
42714505--42714559	22	2.6	21	82	8	67	25	1	34	38	1.67
42714364--42714622	138	1.9	137	88	2	394	30	3	27	38	1.73
42715176--42715267	45	2.0	46	97	2	177	35	17	21	25	1.95
42720296--42720331	17	2.2	17	95	5	65	11	5	33	50	1.61
42720538--42720587	24	2.1	23	88	3	73	10	24	26	40	1.86
42723292--42723334	18	2.3	18	80	11	52	48	20	0	30	1.50
42724346--42724474	56	2.3	56	97	0	240	37	10	21	31	1.87
42724735--42724865	65	2.0	65	100	0	262	36	6	15	41	1.72
42726366--42726424	29	2.0	30	86	3	84	49	15	6	28	1.70
42726376--42726445	29	2.3	29	83	9	79	44	15	7	32	1.74
42729214--42729263	24	2.0	26	85	14	70	60	0	12	28	1.32
42729362--42729416	25	2.3	24	75	6	58	45	0	0	54	0.99
42729574--42731212	821	2.0	819	93	0	2832	30	20	20	28	1.97
42735602--42735642	20	2.0	20	90	4	64	48	7	2	41	1.44
42735975--42736012	8	5.3	7	82	17	51	68	0	5	26	1.11
42736663--42736688	13	2.0	13	100	0	52	53	7	7	30	1.57
42745130--42745158	6	4.8	6	100	0	58	17	0	0	82	0.66
42745676--42745768	41	2.3	39	76	7	96	35	24	21	18	1.95
42745864--42745987	41	3.0	41	78	9	117	16	20	25	36	1.94
42745916--42746232	41	7.7	41	79	4	271	16	22	27	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42745957--42746232	123	2.2	123	81	3	324	17	23	27	31	1.96
42751263--42751324	31	2.0	31	100	0	124	22	19	35	22	1.96
42751548--42751718	66	2.6	65	84	4	209	40	18	26	14	1.89
42751689--42751733	21	2.1	21	87	0	63	33	17	44	4	1.69
42751717--42751750	17	2.0	17	94	0	59	20	17	55	5	1.62
42752115--42752447	43	7.7	43	90	2	472	21	18	29	30	1.97
42752328--42752399	25	3.2	25	59	25	59	25	20	27	26	1.99
42752068--42752450	43	8.9	42	85	6	450	21	19	29	30	1.97
42752779--42752823	18	2.7	16	74	12	54	33	2	0	64	1.06
42753311--42753393	28	3.1	26	75	14	80	44	2	2	50	1.28
42756892--42757001	56	1.9	56	90	5	175	25	10	5	59	1.51
42756907--42757023	56	2.1	56	87	4	166	25	11	5	57	1.56
42758487--42758524	15	2.4	16	86	4	51	78	2	18	0	0.86
42760626--42760667	5	8.4	5	100	0	84	40	0	19	40	1.51
42764123--42764178	28	2.0	29	92	3	96	50	3	12	33	1.58
42770599--42770623	2	12.5	2	100	0	50	52	0	0	48	1.00
42785486--42785518	12	2.8	12	100	0	66	51	0	6	42	1.26
42785585--42785614	15	2.0	15	93	0	51	46	0	10	43	1.37
42795360--42795641	138	2.0	139	99	0	557	47	13	5	32	1.66
42795651--42796059	218	1.9	216	85	7	562	44	5	10	38	1.64
42801769--42801971	101	2.0	101	88	1	280	55	10	3	30	1.50
42805898--42805922	13	1.9	13	100	0	50	20	16	0	64	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42809757--42809822	31	2.1	31	88	5	98	27	12	10	50	1.72
42810932--42811016	39	2.2	39	82	4	100	37	10	10	41	1.74
42813978--42814151	89	2.0	89	87	0	249	44	12	17	26	1.83
42814881--42815040	79	2.0	80	98	1	313	32	20	8	38	1.83
42815531--42815710	84	2.1	84	83	6	231	48	11	7	32	1.67
42815728--42815771	23	1.9	23	85	0	61	61	2	2	34	1.21
42816095--42816155	30	2.0	30	87	0	86	29	14	4	50	1.64
42816532--42816766	93	2.5	93	81	6	269	37	19	5	37	1.76
42816823--42816997	47	3.6	50	75	9	184	33	19	4	42	1.72
42816801--42816997	97	2.0	97	88	0	286	34	19	5	41	1.73
42818159--42818198	16	2.5	17	84	12	57	30	5	0	65	1.14
42818163--42818192	15	1.9	16	93	6	53	30	6	0	63	1.20
42820382--42820431	23	2.2	23	85	0	64	52	2	0	46	1.12
42820909--42821000	48	1.9	47	91	2	148	47	14	9	28	1.75
42823971--42824056	30	2.8	31	80	1	111	37	6	17	38	1.77
42824809--42824853	22	2.0	22	91	0	72	48	4	11	35	1.59
42825775--42825834	31	1.9	31	82	0	75	30	13	11	45	1.79
42827043--42827096	18	2.7	19	78	16	56	53	0	5	40	1.24
42827047--42827106	30	1.9	32	83	6	79	58	0	3	38	1.15
42827646--42827671	5	5.2	5	100	0	52	80	0	0	19	0.71
42843072--42843157	29	2.9	30	69	10	77	40	18	18	22	1.91
42844911--42844936	3	8.7	3	100	0	52	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42858016--42858053	18	2.1	18	85	14	51	34	0	2	63	1.09
42867380--42867762	134	2.8	134	88	3	540	36	12	19	32	1.88
42870773--42870803	2	15.5	2	100	0	62	0	48	0	51	1.00
42874190--42874235	21	2.1	21	84	8	56	28	0	10	60	1.30
42886309--42886343	17	2.1	17	94	0	61	62	0	0	37	0.95
42887566--42888074	35	14.4	35	66	14	179	48	11	11	28	1.74
42887669--42887751	16	4.9	17	70	16	59	57	12	9	20	1.62
42887566--42888075	17	28.9	17	66	14	160	48	11	11	28	1.74
42887971--42888069	37	2.8	36	80	6	103	40	10	15	34	1.80
42888824--42888906	26	3.2	24	83	10	103	2	19	0	78	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145