genome.fa.s13.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  93  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31914322--31914360	5	7.8	5	85	0	51	79	2	5	12	1.00
31914322--31914367	20	2.3	20	88	0	65	76	2	6	15	1.09
31914322--31914360	15	2.6	15	87	0	60	79	2	5	12	1.00
31924594--31924674	40	2.0	41	83	11	105	29	22	19	28	1.98
31927974--31928096	58	2.1	58	83	0	147	37	12	18	31	1.88
31928165--31928611	70	6.4	70	80	2	443	20	17	23	38	1.93
31928165--31928611	210	2.1	210	80	3	499	20	17	23	38	1.93
31931740--31931958	109	2.0	109	89	0	330	27	16	21	33	1.95
31934758--31934808	26	2.0	26	88	0	75	11	27	27	33	1.92
31939765--31939879	55	2.1	56	91	1	187	22	13	13	50	1.76
31940291--31940328	20	1.9	20	88	0	58	34	2	10	52	1.50
31942987--31943082	49	2.0	49	93	0	165	53	15	0	31	1.43
31943194--31943246	17	2.8	18	81	13	63	0	32	0	67	0.91
31943190--31943246	20	2.8	21	74	17	57	0	31	0	68	0.90
31943388--31943449	27	2.3	27	91	0	97	29	24	19	27	1.98
31943507--31943572	24	2.8	24	75	11	73	59	1	0	39	1.07
31943550--31943731	58	3.2	58	82	8	248	41	11	13	32	1.81
31943810--31943887	38	2.0	40	92	5	133	51	8	11	28	1.68
31944317--31944360	21	2.1	21	100	0	88	45	9	9	36	1.68
31944721--31944755	15	2.3	15	95	0	61	54	0	2	42	1.15
31956001--31956295	98	3.0	98	97	0	554	29	9	24	37	1.86
31966852--31966974	45	2.7	45	79	12	153	26	21	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31967052--31967349	45	6.8	44	71	17	172	29	21	23	25	1.99
31967138--31967250	44	2.6	43	87	5	156	28	23	20	28	1.99
31970369--31970413	17	2.6	16	86	13	63	55	4	2	37	1.32
31978498--31978549	20	2.6	20	84	6	61	59	3	7	28	1.43
31978498--31978551	19	2.7	19	85	5	63	57	3	7	31	1.44
31978512--31978551	19	2.0	20	90	4	64	57	5	7	30	1.48
31978934--31979375	190	2.4	186	84	7	561	32	10	19	37	1.86
31978934--31979386	88	5.0	88	77	13	436	32	10	19	37	1.86
31980045--31980517	236	2.0	237	99	0	939	38	14	11	35	1.83
31980732--31980767	6	6.2	6	93	6	65	36	47	0	16	1.47
31981828--31981893	27	2.4	27	80	9	73	34	6	9	50	1.59
31985950--31986453	47	10.7	47	93	0	767	39	15	10	34	1.82
31986830--31986864	15	2.3	15	90	9	54	51	22	0	25	1.48
31993162--31993525	47	7.7	46	91	1	496	40	15	10	33	1.81
31993162--31993525	94	3.9	94	92	2	579	40	15	10	33	1.81
31993162--31993525	141	2.6	140	91	1	550	40	15	10	33	1.81
31994446--31994561	43	2.7	43	79	15	132	29	29	20	20	1.98
31996636--31997694	152	7.0	151	80	9	1177	30	10	6	52	1.61
31996629--31997695	305	3.5	304	89	3	1567	30	10	6	52	1.61
31998024--31998127	4	24.5	4	74	23	63	0	30	0	68	0.96
31998028--31998127	10	9.0	10	70	19	56	1	31	0	68	0.97
31998021--31998157	42	3.0	43	78	12	116	0	35	0	63	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31998063--31998160	5	20.0	5	75	12	55	1	35	0	63	1.02
31998127--31998164	11	3.5	11	96	0	67	0	52	0	47	1.00
32000933--32001028	48	2.0	48	89	0	147	20	17	30	31	1.96
32002486--32002616	64	2.0	64	97	0	244	31	20	19	28	1.97
32011126--32011282	28	5.8	28	76	11	166	26	24	14	34	1.93
32011160--32011282	53	2.3	54	88	1	185	29	24	13	33	1.93
32012290--32012318	2	14.5	2	100	0	58	51	48	0	0	1.00
32013892--32013934	20	2.2	20	82	0	50	51	0	0	48	1.00
32020244--32020269	2	13.0	2	100	0	52	50	0	0	50	1.00
32022487--32022577	37	2.5	37	85	3	112	12	19	29	38	1.88
32022549--32022600	22	2.4	21	81	6	68	15	19	25	40	1.90
32022922--32023047	62	2.0	62	96	0	234	26	13	18	41	1.87
32024395--32024445	21	2.4	21	83	0	75	21	39	15	23	1.92
32025151--32025190	20	2.0	20	100	0	80	50	15	15	20	1.79
32025494--32025630	70	2.0	69	82	4	168	24	24	24	26	2.00
32031009--32031077	3	23.0	3	80	11	70	31	4	1	62	1.24
32039662--32039713	23	2.3	23	83	6	61	75	7	3	13	1.17
32058522--32058841	27	11.9	27	78	6	265	44	9	21	24	1.81
32065804--32065828	13	1.9	13	100	0	50	72	0	12	16	1.13
32078216--32078436	27	8.4	27	79	7	179	42	20	16	19	1.88
32078265--32078468	102	2.0	104	84	5	270	41	19	16	22	1.90
32078414--32078469	27	2.1	27	86	0	76	37	19	16	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32084079--32084211	37	3.5	37	80	8	167	32	3	21	42	1.70
32084079--32084211	40	3.5	37	82	6	167	32	3	21	42	1.70
32089785--32089843	26	2.1	29	81	9	70	66	3	25	5	1.28
32095031--32095087	25	2.3	23	80	14	60	50	5	0	43	1.24
32095040--32095090	25	2.0	24	85	7	66	50	3	0	45	1.20
32102253--32102352	50	2.0	50	94	0	173	39	16	29	16	1.89
32106910--32106936	7	3.9	7	100	0	54	55	0	0	44	0.99
32116918--32116960	21	2.0	21	100	0	86	62	0	13	23	1.31
32118734--32118847	54	2.1	54	83	0	138	29	23	27	19	1.98
32118766--32118879	54	2.1	54	98	0	219	26	21	31	21	1.98
32118773--32118857	27	3.1	27	60	6	64	30	21	29	18	1.97
32126725--32126802	37	2.1	37	92	0	129	26	16	29	26	1.97
32127234--32127304	27	2.6	27	82	8	90	46	15	12	25	1.81
32127305--32127420	27	4.3	27	78	4	108	42	16	18	23	1.89
32127239--32127374	70	1.9	70	83	2	175	46	15	13	24	1.82
32127317--32127421	27	3.9	27	79	0	111	41	17	18	22	1.89
32127428--32127742	134	2.3	135	82	1	409	33	19	22	25	1.97
32127411--32127740	161	2.0	161	84	0	426	33	19	22	24	1.97
32127357--32127743	27	14.4	27	82	3	386	33	19	21	24	1.97
32127770--32127825	24	2.3	24	90	0	85	25	5	23	46	1.73
32127904--32127963	27	2.2	27	85	11	79	20	25	23	31	1.98
32127917--32127969	27	2.0	27	85	7	72	20	26	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32127951--32128005	26	2.1	26	89	0	83	16	21	25	36	1.94
32128005--32128195	32	6.0	32	83	0	220	26	21	15	36	1.94
32128007--32128196	96	2.0	96	85	0	254	25	22	15	36	1.94
32128200--32128264	22	3.0	21	77	4	67	16	21	16	44	1.86
32129988--32130027	14	2.9	14	84	0	53	32	7	17	42	1.77
32130011--32130050	20	2.0	20	90	0	62	27	10	12	50	1.72
32129996--32130062	34	1.9	35	90	3	109	31	8	13	46	1.74
32129990--32130066	14	5.0	15	71	20	52	32	9	15	42	1.78
32130041--32130127	33	2.6	31	79	15	95	26	8	19	45	1.78
32133426--32135125	850	2.0	850	100	0	3400	33	20	21	24	1.97
32135150--32135197	21	2.3	21	88	0	69	31	6	33	29	1.82
32152633--32152663	15	2.1	15	93	0	53	32	12	16	38	1.86
32159795--32159887	49	1.9	48	82	6	116	12	21	13	51	1.75
32164180--32164240	28	2.2	28	82	5	70	54	6	1	37	1.37
32169901--32169950	25	2.0	25	100	0	100	40	12	12	36	1.79
32181170--32181219	15	3.3	15	85	0	64	56	2	6	36	1.36
32181780--32181868	45	2.0	46	97	2	171	44	8	14	31	1.76
32182919--32183429	132	3.9	131	79	9	538	25	24	18	31	1.97
32191884--32191923	19	2.1	19	86	9	55	60	15	2	22	1.47
32195439--32195488	15	3.3	15	85	0	64	56	2	6	36	1.36
32212151--32212303	46	3.3	46	68	20	145	42	3	16	36	1.67
32212162--32212316	49	3.2	49	68	20	155	39	4	16	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32212147--32212334	94	2.0	94	100	0	376	40	4	15	39	1.67
32213163--32213255	22	4.3	21	71	19	66	29	0	7	63	1.22
32215026--32215068	22	1.9	23	85	4	61	11	20	23	44	1.84
32215164--32215327	43	3.8	43	86	3	240	31	25	17	25	1.97
32215159--32215346	43	4.4	42	80	7	207	33	24	18	23	1.97
32215160--32215346	86	2.2	87	84	4	254	33	24	18	23	1.96
32219843--32219998	7	21.9	7	70	11	57	44	32	0	23	1.58
32219844--32219998	21	7.2	21	69	15	86	44	31	0	23	1.58
32220209--32220385	91	1.9	92	95	1	320	27	27	23	22	1.99
32220304--32220949	114	5.7	114	89	1	956	26	24	23	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145