genome.fa.s13.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  125  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41165175--41165223	11	4.5	11	82	5	55	73	6	6	14	1.22
41165175--41165223	21	2.3	22	89	3	73	73	6	6	14	1.22
41165683--41165855	91	1.9	92	84	5	235	32	8	14	43	1.76
41177118--41177145	2	14.0	2	100	0	56	50	0	0	50	1.00
41177195--41177228	3	11.3	3	100	0	68	67	32	0	0	0.91
41177227--41177442	3	72.0	3	100	0	432	66	0	0	33	0.92
41178622--41178845	50	4.5	50	81	5	283	22	17	24	35	1.95
41178671--41178850	99	1.8	99	92	0	306	21	18	24	35	1.96
41199589--41199653	30	2.2	31	91	5	107	43	12	0	44	1.41
41199945--41200028	35	2.4	36	86	4	109	30	34	13	21	1.91
41200095--41200170	28	2.7	28	82	8	84	28	17	27	26	1.97
41200123--41200171	14	3.5	14	72	10	55	26	18	26	28	1.98
41203166--41203432	3	87.7	3	69	12	100	58	2	9	29	1.45
41203166--41203323	66	2.4	66	93	0	262	59	1	10	29	1.38
41203298--41203359	25	2.5	25	81	5	72	59	4	1	33	1.28
41203229--41203394	28	5.9	28	71	12	99	59	3	6	30	1.40
41203496--41203534	13	2.8	13	88	7	51	79	0	7	12	0.93
41203967--41204014	24	2.0	24	100	0	96	20	20	33	25	1.97
41204889--41205131	44	5.6	44	73	5	188	27	21	22	28	1.99
41204879--41205136	88	3.0	86	77	7	288	27	21	22	28	1.99
41205148--41205502	45	8.0	46	82	10	427	22	23	25	28	1.99
41205141--41205497	89	4.0	89	88	5	438	22	23	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41207743--41207876	66	2.0	64	81	8	153	14	28	17	38	1.90
41210086--41210142	10	5.6	10	80	2	69	35	1	15	47	1.56
41221214--41221256	21	2.0	21	90	0	68	37	11	13	37	1.82
41221929--41222197	107	2.5	107	94	0	457	24	6	24	44	1.77
41222101--41222145	12	4.0	11	78	16	56	17	0	20	62	1.33
41222104--41222145	11	3.7	12	78	9	52	19	0	19	61	1.34
41222099--41222173	22	3.3	23	76	14	75	17	4	21	57	1.56
41241583--41241609	11	2.5	11	100	0	54	22	7	18	51	1.70
41242908--41243185	136	2.0	138	96	1	515	35	7	10	47	1.65
41243146--41243354	92	2.3	91	86	5	278	45	3	3	46	1.39
41243282--41243329	26	1.9	25	84	16	64	45	0	2	52	1.12
41243504--41243545	15	2.7	16	82	14	52	45	0	2	52	1.13
41243495--41243536	15	2.9	15	82	10	52	47	0	0	52	1.00
41245131--41245525	196	2.0	197	99	0	783	39	12	11	36	1.79
41246363--41246440	38	2.1	38	100	0	156	28	20	10	41	1.85
41247551--41247724	87	2.0	87	98	0	339	31	18	17	32	1.94
41248009--41248188	43	4.2	43	78	7	170	31	22	17	28	1.97
41248032--41248208	43	4.1	43	77	5	144	29	22	18	28	1.97
41248374--41248435	28	2.2	29	81	18	78	48	32	0	19	1.49
41248616--41248713	40	2.4	41	81	8	121	28	22	18	30	1.97
41248755--41248864	40	2.7	41	81	2	134	26	23	19	30	1.98
41248552--41248987	152	2.8	150	86	5	545	28	23	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41248542--41248987	154	2.9	153	83	8	577	28	23	16	31	1.96
41248929--41249026	40	2.4	41	86	5	128	24	27	20	27	1.99
41248929--41249056	41	3.2	40	84	5	150	22	27	21	28	1.99
41256884--41257062	87	2.1	87	84	4	227	41	18	19	20	1.91
41262536--41262582	18	2.5	19	79	6	51	55	2	6	36	1.37
41262702--41262731	3	9.7	3	92	7	51	70	0	0	30	0.88
41265011--41265051	20	2.0	20	86	9	57	43	2	2	51	1.28
41265050--41265085	19	1.9	19	88	5	56	38	2	8	50	1.47
41265232--41265271	14	2.6	16	76	15	57	40	12	12	35	1.81
41268853--41268887	16	2.2	16	90	5	54	28	0	0	71	0.86
41270253--41270341	31	2.9	31	71	6	81	44	17	1	35	1.57
41272833--41272888	29	1.9	29	88	0	85	33	1	7	57	1.37
41274815--41274848	12	2.9	12	91	4	52	61	8	5	23	1.47
41277700--41277753	27	2.0	27	96	0	99	42	14	1	40	1.57
41278056--41278080	12	2.1	12	100	0	50	24	8	52	16	1.70
41279571--41279763	60	3.2	58	78	10	156	49	12	17	20	1.79
41279654--41279763	31	3.6	30	75	4	105	50	8	18	23	1.73
41285662--41285686	7	3.6	7	100	0	50	48	0	0	52	1.00
41290594--41290635	23	1.9	23	85	9	61	28	14	33	23	1.94
41291394--41291446	26	2.0	27	96	3	99	37	7	18	35	1.80
41291423--41291460	19	2.0	19	100	0	76	31	10	10	47	1.72
41301036--41301100	33	1.9	33	81	9	78	32	7	1	58	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41315774--41315831	30	1.9	30	100	0	116	29	36	0	34	1.58
41315803--41315853	22	2.3	22	93	6	86	29	35	0	35	1.58
41315887--41315952	31	2.2	30	94	2	114	40	0	0	59	0.98
41315906--41315946	21	2.0	21	95	0	73	43	0	0	56	0.99
41316792--41316816	7	3.6	7	100	0	50	28	0	12	60	1.32
41319216--41319308	29	3.2	28	90	4	132	44	26	1	27	1.61
41324540--41324570	16	1.9	16	100	0	62	77	0	6	16	0.97
41330893--41330930	20	1.9	20	88	0	58	36	2	13	47	1.56
41331053--41331097	24	1.9	23	86	4	63	57	2	8	31	1.41
41331061--41331115	20	2.8	20	77	2	58	54	1	9	34	1.43
41331158--41331200	17	2.7	16	86	10	61	65	0	4	30	1.13
41332264--41332303	17	2.4	17	91	8	64	5	5	42	47	1.47
41340983--41341013	4	7.8	4	92	0	53	74	3	0	22	0.96
41341917--41341964	11	4.4	11	81	0	60	66	10	4	18	1.37
41341924--41341998	22	3.4	22	79	0	69	61	12	10	16	1.57
41343821--41343928	53	2.0	53	90	0	171	37	14	8	38	1.77
41348884--41348987	48	2.2	48	98	0	199	39	15	15	29	1.88
41362959--41363003	14	3.2	14	80	0	54	46	33	0	20	1.51
41366651--41366707	27	2.1	27	84	9	73	68	3	28	0	1.06
41367412--41367464	22	2.4	22	78	6	63	13	20	15	50	1.76
41370984--41371175	98	2.0	98	82	2	233	32	16	22	29	1.95
41371712--41371747	18	2.0	18	94	0	63	36	0	2	61	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41373060--41373257	109	1.9	107	83	8	260	46	12	8	32	1.71
41374802--41374860	16	3.8	16	74	14	61	71	1	5	22	1.15
41374815--41374892	37	2.1	36	81	11	88	71	5	5	17	1.23
41376468--41376712	44	5.5	44	73	8	185	29	15	18	36	1.92
41376500--41376712	44	4.8	45	76	5	200	30	16	17	36	1.92
41376464--41376713	89	2.8	89	85	3	317	29	16	18	36	1.92
41376692--41376803	50	2.2	51	84	4	138	31	24	16	28	1.96
41380860--41380920	30	2.0	31	93	3	106	29	19	13	37	1.90
41388587--41388626	4	10.2	4	84	15	57	75	0	2	22	0.93
41388515--41388654	58	2.4	58	77	7	140	64	1	8	25	1.30
41389490--41389553	32	2.0	32	93	0	110	48	9	15	26	1.75
41393371--41393439	32	2.1	34	83	5	88	73	5	7	13	1.22
41393539--41393700	50	3.2	50	75	16	186	51	4	9	34	1.53
41393581--41393740	52	3.0	53	75	17	188	51	3	9	36	1.50
41393536--41393748	104	2.0	104	94	0	372	52	3	9	34	1.52
41393642--41393690	20	2.5	20	86	0	71	55	0	8	36	1.30
41393564--41393722	52	3.1	50	69	22	148	52	3	9	34	1.52
41394911--41395102	44	4.4	45	70	6	117	29	21	16	31	1.96
41394890--41395071	44	4.1	45	68	8	115	31	20	17	30	1.96
41396580--41396609	15	2.0	15	100	0	60	20	20	20	40	1.92
41400816--41400850	18	1.9	18	100	0	70	28	17	5	48	1.69
41402336--41402372	3	12.3	3	100	0	74	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41407240--41407315	31	2.5	31	100	0	152	38	9	9	43	1.69
41407463--41407489	2	13.5	2	100	0	54	48	0	0	51	1.00
41410463--41410491	9	3.2	9	100	0	58	58	0	0	41	0.98
41418778--41418817	18	2.2	19	86	4	55	40	5	2	52	1.37
41418792--41419119	109	3.1	110	65	16	310	42	7	6	42	1.58
41418987--41419026	18	2.2	19	86	4	55	40	5	2	52	1.37
41418708--41419127	209	2.0	210	99	0	833	40	7	7	44	1.60
41422134--41422173	19	2.2	18	86	4	53	15	5	22	57	1.57
41423853--41423976	55	2.2	56	89	1	187	43	16	8	32	1.77
41425467--41425505	19	2.1	19	100	0	78	56	20	10	12	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145