genome.fa.s13.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  86  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29226766--29226832	32	2.1	32	97	0	125	40	11	11	35	1.79
29233111--29233154	22	2.1	20	87	8	61	40	0	4	54	1.21
29236375--29236472	42	2.3	42	92	0	160	27	25	10	36	1.88
29239878--29239955	42	1.9	40	82	7	95	21	28	29	20	1.98
29246070--29246121	26	1.9	27	88	7	79	19	11	13	55	1.68
29250725--29251014	139	2.1	140	98	1	555	28	3	11	56	1.50
29252690--29252791	26	3.8	26	73	15	75	42	5	2	49	1.42
29253226--29253362	70	1.9	71	91	1	222	27	16	18	37	1.92
29258434--29258489	6	8.8	6	77	11	58	82	0	17	0	0.68
29258435--29258493	19	3.1	18	84	15	82	81	0	18	0	0.69
29259895--29262679	100	27.9	100	88	1	2877	31	21	19	26	1.97
29259897--29262861	50	59.3	50	75	1	2342	31	21	20	26	1.97
29263211--29263327	44	2.7	44	81	7	139	25	19	26	28	1.99
29264936--29264968	3	10.7	3	93	6	57	30	0	0	69	0.88
29265573--29265714	71	2.0	71	92	0	239	27	18	19	35	1.95
29267442--29267471	15	2.0	15	100	0	60	0	13	0	86	0.57
29267442--29267471	7	4.1	7	91	8	51	0	13	0	86	0.57
29271618--29271666	18	2.7	19	75	12	57	32	4	0	63	1.13
29275061--29275107	14	3.3	15	79	8	53	29	0	29	40	1.57
29275232--29275278	24	1.9	25	91	4	78	21	2	42	34	1.65
29279401--29279491	43	2.1	43	87	2	130	34	10	9	45	1.73
29279838--29280201	43	8.7	43	80	4	384	25	18	27	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29279838--29280189	85	4.2	85	85	5	428	25	18	27	28	1.98
29279865--29280193	166	2.0	165	85	0	442	25	18	27	28	1.98
29282614--29282646	11	2.8	12	81	9	50	48	15	21	15	1.81
29284909--29284987	39	2.0	39	97	0	149	36	27	8	26	1.86
29288165--29288280	45	2.6	45	90	0	178	24	18	12	43	1.85
29288199--29288268	23	3.2	21	68	18	61	30	18	14	37	1.90
29295418--29295456	18	2.2	18	85	0	51	41	10	7	41	1.68
29297469--29297503	13	2.8	12	87	8	52	74	2	8	14	1.17
29299033--29299072	21	1.9	21	84	0	53	17	25	25	32	1.97
29302708--29302944	41	5.8	41	80	0	267	17	19	24	38	1.93
29305297--29305376	36	2.3	35	91	4	126	33	7	15	43	1.74
29305253--29305376	34	3.6	36	80	8	143	36	8	12	41	1.75
29312016--29312137	34	3.6	34	86	4	158	34	7	13	44	1.72
29327780--29327926	41	3.6	41	92	0	249	23	24	20	31	1.98
29339661--29339693	16	2.1	16	94	0	57	24	3	3	69	1.16
29342616--29342657	22	1.9	22	85	0	57	57	26	7	9	1.56
29348388--29348440	27	2.0	27	84	0	70	18	28	20	32	1.97
29349768--29349830	31	2.0	31	100	0	126	39	12	3	44	1.59
29360556--29360642	26	3.3	26	86	0	111	18	41	25	14	1.89
29361172--29361216	21	2.3	19	88	7	63	77	4	15	2	1.02
29363147--29363171	5	5.0	5	100	0	50	80	0	0	20	0.72
29367464--29367585	42	2.9	43	83	8	128	31	30	17	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29370645--29370699	13	4.2	13	76	4	56	34	18	0	47	1.49
29370647--29370699	27	2.0	27	85	7	72	35	18	0	45	1.50
29381166--29381209	18	2.4	18	80	0	52	63	0	2	34	1.07
29381206--29381239	12	3.0	11	87	8	50	55	0	0	44	0.99
29382518--29382561	22	2.0	23	86	4	63	54	2	9	34	1.44
29384360--29384412	24	2.2	24	93	0	88	39	24	3	32	1.73
29385959--29386181	43	5.2	41	72	10	137	24	20	18	36	1.95
29386481--29386508	8	3.5	8	100	0	56	28	10	0	60	1.30
29390659--29390847	95	2.0	97	91	2	310	31	17	14	37	1.90
29392635--29392682	24	2.0	25	84	12	64	56	10	8	25	1.61
29394392--29394429	20	2.0	20	94	5	69	31	5	31	31	1.80
29396671--29396729	29	2.0	29	100	0	118	20	20	3	55	1.57
29396730--29396790	24	2.5	24	91	0	104	21	22	13	42	1.87
29399449--29399488	19	2.0	21	85	9	57	35	0	0	65	0.93
29399764--29399808	14	2.9	17	78	18	53	53	8	0	37	1.32
29399876--29399926	17	2.9	17	86	13	61	21	3	1	72	1.11
29403028--29403558	264	2.0	266	99	0	1048	44	6	5	44	1.52
29416390--29416429	19	2.0	20	86	13	57	45	2	0	52	1.14
29417288--29417316	9	3.0	10	90	10	51	89	10	0	0	0.48
29417289--29417314	9	2.9	9	100	0	52	92	7	0	0	0.39
29417343--29417421	27	2.9	27	90	7	117	27	26	29	16	1.97
29422015--29422115	10	10.5	10	70	16	79	0	33	0	65	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29422022--29422132	18	6.1	18	74	15	95	0	32	0	66	0.98
29422014--29422123	38	2.9	38	90	2	159	0	34	0	64	1.00
29422059--29422132	14	5.1	14	72	22	55	0	31	0	68	0.89
29422053--29422132	34	2.8	28	75	24	85	0	32	0	67	0.91
29422064--29422135	10	6.6	10	73	17	54	0	31	0	68	0.90
29422093--29422135	22	1.9	23	85	4	61	0	30	0	69	0.88
29422055--29422136	28	2.7	30	75	19	89	0	32	0	67	0.91
29422034--29422149	42	2.9	40	80	10	105	0	36	0	63	0.94
29422290--29422359	28	2.5	29	90	6	110	48	1	10	40	1.45
29427792--29427828	18	2.0	18	89	5	56	32	18	5	43	1.73
29433929--29433957	15	1.9	15	100	0	58	86	0	13	0	0.58
29433961--29434009	19	2.5	19	79	20	57	42	2	2	53	1.24
29433976--29434171	101	2.0	100	84	7	263	37	5	6	51	1.50
29442352--29442406	28	2.0	28	92	0	92	30	7	18	43	1.77
29443713--29443857	50	2.9	50	83	4	175	26	21	29	22	1.99
29444051--29444099	20	2.5	20	81	15	66	57	6	24	12	1.58
29451654--29451686	17	2.0	17	94	5	50	66	6	6	21	1.35
29463326--29463510	51	3.7	50	84	5	221	30	27	14	28	1.95
29463425--29463507	26	3.2	26	65	27	68	32	25	12	30	1.92
29467204--29467486	50	5.7	51	80	6	287	22	28	20	27	1.99
29467253--29467486	100	2.3	100	88	1	326	22	29	20	26	1.99
29467204--29467483	150	1.9	148	81	6	341	22	29	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29467935--29467973	18	2.2	18	85	0	51	20	20	2	56	1.54
29476848--29476993	25	5.8	25	82	3	159	35	22	12	29	1.91
29485100--29485141	22	2.1	19	86	13	57	52	0	2	45	1.13
29485712--29485771	27	2.2	27	85	5	77	38	5	10	46	1.59
29485722--29485778	27	2.1	27	96	0	105	38	3	12	45	1.59
29494800--29494861	18	3.3	18	67	20	54	43	8	33	14	1.75
29494793--29494878	39	2.2	39	97	0	163	47	6	32	12	1.68
29497566--29497660	27	3.6	28	70	17	94	35	31	17	14	1.91
29497573--29497685	52	2.2	52	98	0	217	33	30	20	15	1.94
29497600--29497687	25	3.4	25	70	11	88	31	30	21	15	1.95
29504125--29504151	2	13.5	2	100	0	54	51	0	0	48	1.00
29504467--29504735	46	5.8	46	89	1	423	28	24	9	36	1.87
29567401--29567623	50	4.5	50	82	3	191	21	26	22	29	1.99
29567440--29567623	50	3.7	50	84	2	217	21	28	22	27	1.99
29567440--29567620	100	1.8	100	84	2	247	21	28	22	27	1.99
29581626--29581812	50	3.6	50	80	8	173	27	19	28	24	1.98
29581732--29581913	50	3.7	48	81	5	195	31	20	24	23	1.98
29582122--29582160	20	2.0	20	90	10	62	56	5	20	17	1.60
29584706--29584732	14	1.9	14	100	0	54	62	7	0	29	1.22
29586181--29586211	6	5.2	6	92	0	53	16	12	0	70	1.16
29587327--29587461	54	2.5	53	79	4	162	24	27	25	22	2.00
29588417--29588605	73	2.6	73	82	3	220	37	28	13	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29588440--29588605	36	4.6	36	79	6	174	37	28	12	21	1.90
29599066--29599094	14	2.0	15	93	6	51	68	0	0	31	0.89
29603841--29603886	20	2.3	19	78	10	56	36	0	0	63	0.95
29609093--29609151	25	2.4	25	97	0	109	25	6	0	67	1.15
29610729--29610826	39	2.5	39	88	1	135	36	9	12	41	1.74
29610735--29610845	39	2.8	39	83	2	134	36	9	11	42	1.73
29611306--29611367	31	2.0	31	96	0	115	32	14	22	30	1.94
29612873--29612922	19	2.4	19	83	12	55	34	0	6	60	1.21
29613061--29613228	84	2.0	84	97	0	318	43	14	8	32	1.77
29613431--29613706	102	2.7	101	83	5	313	40	9	19	30	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145