genome.fa.s13.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  122  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40191502--40191563	31	2.0	31	96	0	115	22	20	6	50	1.71
40194955--40195196	83	2.9	83	92	1	407	29	6	12	51	1.64
40196269--40196368	24	4.2	24	100	0	200	29	8	16	47	1.74
40199348--40199758	135	3.0	135	92	1	687	39	14	24	21	1.91
40202064--40202128	29	2.2	28	81	8	76	52	9	1	36	1.43
40216196--40216268	22	3.3	22	76	3	58	35	6	17	39	1.77
40216255--40216313	22	2.7	22	82	10	68	28	5	23	42	1.75
40219775--40219815	6	6.8	6	100	0	82	48	0	0	51	1.00
40229290--40229323	14	2.4	14	90	9	52	55	0	0	44	0.99
40233309--40233427	59	2.0	60	98	1	231	30	11	19	38	1.87
40240411--40240503	46	2.0	46	100	0	186	32	8	34	24	1.86
40242461--40242654	105	1.9	101	87	4	280	26	24	17	32	1.96
40243760--40243871	56	2.0	56	87	0	161	22	27	27	22	1.99
40247390--40247430	20	2.0	20	85	0	55	41	9	2	46	1.50
40251070--40251194	40	3.1	41	72	6	105	36	22	22	19	1.95
40251257--40251393	41	3.3	41	90	0	211	16	24	29	28	1.97
40261267--40261310	19	2.3	19	80	0	52	63	0	11	25	1.27
40262932--40263126	96	2.0	96	98	0	381	29	10	19	40	1.85
40272561--40272706	71	2.0	72	98	1	285	34	4	4	56	1.37
40273633--40273666	16	2.1	17	88	5	52	58	5	5	29	1.45
40273685--40273940	91	2.8	90	79	3	271	52	10	6	30	1.61
40277160--40277258	49	2.0	49	100	0	198	34	18	10	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40277430--40277460	6	5.2	6	92	0	53	32	3	16	48	1.62
40292093--40292154	20	3.2	20	66	13	56	22	20	25	30	1.98
40293859--40293884	5	5.2	5	100	0	52	19	19	19	42	1.90
40300659--40300761	41	2.5	41	88	0	161	29	18	22	30	1.97
40301540--40301564	2	12.5	2	100	0	50	52	0	0	48	1.00
40302648--40302688	20	2.0	20	86	9	57	48	12	4	34	1.62
40305692--40305791	27	3.7	26	79	10	85	30	10	20	40	1.85
40313045--40313190	72	2.0	73	97	2	276	39	5	5	50	1.49
40317915--40318105	71	2.7	70	85	4	240	35	16	18	29	1.93
40317913--40318149	71	3.4	70	81	7	238	37	15	18	28	1.91
40318045--40318293	65	3.7	66	75	9	186	35	14	19	30	1.92
40318043--40318293	134	1.9	133	82	4	317	35	14	19	31	1.92
40322938--40322971	3	11.0	3	93	6	59	64	0	0	35	0.94
40323727--40323877	52	2.9	52	93	0	257	20	22	13	43	1.86
40324621--40324647	3	9.0	3	100	0	54	66	0	0	33	0.92
40324866--40324907	19	2.3	19	84	12	52	71	2	0	26	0.98
40324858--40324908	19	2.7	18	77	14	50	68	1	0	29	1.00
40342537--40342888	139	2.5	139	82	4	390	30	19	22	27	1.98
40350488--40350545	29	1.9	30	89	6	91	51	13	12	22	1.74
40352933--40353230	152	2.0	149	90	4	469	31	21	20	26	1.98
40353285--40353620	169	2.0	165	94	2	582	32	19	26	21	1.97
40360627--40360651	5	5.0	5	100	0	50	20	0	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40366388--40366413	6	4.3	6	100	0	52	65	0	0	34	0.93
40387306--40387334	2	14.5	2	100	0	58	48	0	0	51	1.00
40387390--40387416	2	13.5	2	100	0	54	48	0	0	51	1.00
40387275--40387440	82	2.0	82	96	2	305	33	9	13	43	1.75
40393164--40393194	13	2.4	13	94	0	53	45	9	0	45	1.36
40393436--40393482	20	2.4	19	86	10	67	21	0	2	76	0.89
40393436--40393506	11	7.2	9	77	12	52	26	0	1	71	0.94
40394018--40394047	14	2.2	13	94	5	51	66	0	3	30	1.07
40395079--40395138	30	2.0	30	96	0	111	25	3	15	56	1.54
40397024--40397074	16	3.2	16	85	0	66	41	5	27	25	1.78
40397221--40397248	3	9.3	3	100	0	56	35	0	0	64	0.94
40400790--40400842	23	2.3	22	78	12	61	69	0	1	28	0.99
40400801--40400846	23	2.0	24	87	12	69	65	0	4	30	1.12
40400801--40400853	23	2.2	24	83	12	65	66	1	3	28	1.20
40403188--40403226	20	2.0	20	84	0	51	38	10	12	38	1.78
40403205--40403444	17	13.8	17	75	10	198	44	11	15	28	1.82
40403205--40403445	35	6.9	35	81	7	260	43	11	16	28	1.82
40403253--40403440	18	10.7	17	76	12	143	44	10	16	28	1.81
40404334--40404427	10	9.6	10	69	19	56	1	25	0	73	0.90
40404354--40404432	26	3.0	27	71	16	76	0	30	0	69	0.89
40404382--40404425	11	4.1	12	78	21	53	0	29	0	70	0.88
40404334--40404433	27	3.8	26	73	17	82	1	28	0	71	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40404496--40404525	11	2.8	11	95	5	53	0	33	0	66	0.92
40404596--40404629	15	2.3	15	94	0	59	2	11	58	26	1.47
40404903--40404974	30	2.4	31	81	9	78	40	5	20	33	1.76
40404934--40405063	30	4.4	30	75	14	110	39	4	20	35	1.74
40405398--40406116	75	9.5	76	84	6	761	34	19	16	28	1.94
40405412--40406096	227	3.0	225	84	4	847	33	20	17	29	1.95
40417710--40417748	20	2.0	20	84	0	51	38	10	12	38	1.78
40417727--40417986	18	14.9	17	75	10	204	45	10	14	28	1.79
40417734--40417798	34	1.9	34	83	0	85	49	12	9	29	1.71
40417775--40417992	35	6.2	35	80	8	214	44	9	14	30	1.77
40417727--40417991	53	5.1	51	76	14	224	44	10	14	30	1.78
40417775--40417991	18	12.5	17	78	15	214	45	9	14	30	1.77
40417727--40417992	35	7.6	34	75	13	206	44	10	14	30	1.78
40418197--40418232	19	1.9	18	88	5	54	47	13	8	30	1.73
40418550--40418602	7	7.7	7	83	8	65	0	15	0	84	0.61
40418549--40418602	9	5.8	9	81	14	65	0	16	0	83	0.65
40418549--40418599	20	2.5	20	84	9	68	0	17	0	82	0.67
40418550--40418602	17	3.1	17	84	10	72	0	15	0	84	0.61
40418704--40418767	23	2.7	23	80	7	74	1	21	17	59	1.46
40418879--40418951	8	8.6	8	77	15	58	1	23	0	75	0.88
40418900--40418951	25	2.1	24	86	10	70	0	25	0	75	0.81
40418914--40418967	10	5.1	12	77	18	50	0	29	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40418914--40418967	7	8.1	7	78	15	53	0	29	0	70	0.88
40419474--40419626	30	5.1	30	73	13	102	40	5	20	32	1.77
40435678--40435721	18	2.4	18	84	3	52	63	2	4	29	1.26
40437785--40437834	22	2.2	23	82	10	59	30	2	6	62	1.31
40440748--40440823	26	3.0	26	70	1	73	35	21	25	18	1.95
40447258--40447306	20	2.7	18	77	22	57	42	2	4	51	1.32
40463189--40463228	16	2.5	17	76	15	50	52	10	2	35	1.48
40464420--40464577	42	3.8	42	87	0	217	9	21	32	36	1.86
40464559--40464658	33	3.0	33	86	0	137	8	26	35	31	1.85
40468188--40468243	23	2.5	23	76	2	60	51	3	0	44	1.18
40469974--40470026	24	2.3	22	87	12	72	32	1	1	64	1.15
40474241--40474283	14	2.9	15	79	6	52	60	16	2	20	1.46
40479096--40479127	10	3.4	10	83	16	50	9	0	18	71	1.12
40481303--40481385	25	3.3	26	79	14	86	21	25	21	31	1.98
40503414--40503447	18	2.0	17	88	11	52	44	0	20	35	1.52
40513182--40513223	16	2.5	17	84	11	59	52	11	2	33	1.51
40515203--40515851	322	2.0	322	93	0	1118	28	17	18	35	1.94
40519036--40519084	23	2.0	25	84	11	66	38	12	6	42	1.67
40519174--40519214	21	1.9	22	85	14	59	46	2	0	51	1.14
40524090--40524162	27	2.7	27	78	0	74	28	8	26	36	1.85
40524311--40524370	27	2.2	27	96	0	111	35	13	30	21	1.92
40528522--40528567	24	1.9	24	86	8	67	23	4	47	23	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40528532--40528577	24	1.9	24	86	8	67	26	2	47	23	1.63
40531434--40531481	19	2.6	19	83	3	53	66	10	14	8	1.43
40534936--40535051	37	3.1	37	100	0	232	49	18	10	21	1.77
40538367--40538410	24	1.9	24	86	9	65	40	0	0	59	0.98
40541334--40541390	17	3.2	17	80	7	60	35	0	1	63	1.05
40550058--40550083	3	8.7	3	100	0	52	69	0	30	0	0.89
40551813--40551913	49	2.1	48	96	1	184	41	4	21	31	1.75
40554277--40554322	21	2.2	21	92	0	74	43	26	4	26	1.73
40554283--40554326	21	2.1	21	100	0	88	43	22	9	25	1.82
40560479--40560514	18	2.0	18	100	0	72	50	11	5	33	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145