genome.fa.s13.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  30  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10995123--10995177	21	2.7	20	88	5	83	36	16	30	16	1.91
11002456--11002498	21	2.0	21	90	0	68	39	18	27	13	1.89
11011501--11011651	71	2.1	71	85	0	203	40	13	14	31	1.85
11012876--11012923	21	2.2	22	85	7	62	8	10	2	79	1.02
11013077--11013107	16	2.0	15	93	6	53	32	3	6	58	1.40
11025480--11025906	44	9.7	44	90	1	577	28	22	27	21	1.99
11025882--11025999	43	2.7	43	78	8	114	27	21	27	24	1.99
11025481--11025957	132	3.6	132	86	1	427	29	21	27	21	1.99
11029206--11029444	54	4.4	54	78	3	266	38	13	20	27	1.90
11029423--11029637	39	5.5	39	78	2	207	40	17	22	19	1.92
11029621--11029854	54	4.3	54	85	3	256	37	17	21	23	1.94
11029618--11029861	108	2.3	109	81	2	296	38	17	21	22	1.93
11029828--11029982	39	4.0	39	83	3	177	41	14	23	21	1.89
11029837--11030200	78	4.7	78	75	8	251	40	13	23	23	1.89
11029913--11030198	39	7.4	39	73	9	185	39	12	23	24	1.89
11047012--11047058	25	1.9	25	86	4	69	36	2	6	55	1.37
11049941--11050110	90	1.9	88	86	4	243	34	10	14	40	1.80
11050438--11050485	22	2.2	22	85	11	71	41	4	4	50	1.41
11050442--11050486	21	2.1	22	91	4	74	37	4	6	51	1.49
11051027--11051068	22	2.0	22	85	4	59	40	4	9	45	1.58
11052839--11053011	91	1.9	93	80	4	208	38	15	7	38	1.76
11053485--11053589	9	11.8	9	70	14	58	30	0	2	65	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11053517--11053589	8	8.6	8	73	16	51	26	1	2	69	1.09
11060863--11060887	2	12.5	2	100	0	50	52	0	48	0	1.00
11063787--11063829	18	2.3	19	88	11	63	55	0	11	32	1.36
11065692--11065737	22	2.1	22	84	8	58	32	4	2	60	1.28
11066608--11066641	16	2.1	16	100	0	68	17	0	11	70	1.16
11066757--11066802	18	2.6	18	96	0	83	54	6	4	34	1.46
11066866--11066896	16	1.9	16	93	0	53	48	9	0	41	1.36
11067871--11067927	29	1.9	30	85	7	80	45	1	0	52	1.11
11070452--11070499	25	2.0	24	83	4	60	41	8	8	41	1.65
11070611--11070729	61	1.9	62	83	5	152	44	4	4	47	1.42
11074180--11074243	27	2.4	26	84	5	74	15	26	32	25	1.95
11075031--11075077	13	3.5	13	82	5	58	31	2	10	55	1.46
11075098--11075147	14	3.8	13	80	17	50	26	0	20	54	1.45
11082705--11082744	20	2.1	19	85	4	53	32	7	12	47	1.69
11093480--11093565	32	2.6	32	76	20	88	48	3	10	37	1.55
11093730--11093801	37	1.9	37	83	10	94	45	1	11	41	1.48
11093838--11093928	3	30.3	3	77	10	62	58	2	7	31	1.39
11094409--11094453	20	2.1	21	88	8	65	82	0	8	8	0.85
11095030--11095067	15	2.3	17	86	13	53	7	15	57	18	1.62
11098424--11098581	87	1.8	85	82	8	203	24	17	17	40	1.90
11100749--11100790	19	2.2	18	87	8	57	26	0	0	73	0.83
11100749--11100798	20	2.6	19	82	14	66	26	0	2	72	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11101012--11101053	19	2.2	18	87	8	57	26	0	0	73	0.83
11100568--11101107	263	2.1	263	98	0	1046	35	10	14	39	1.81
11101012--11101061	20	2.6	19	82	14	66	26	0	2	72	0.96
11104472--11104496	13	1.9	13	100	0	50	40	8	12	40	1.72
11113368--11113439	23	3.1	24	84	9	96	16	34	1	47	1.56
11119692--11119743	26	2.0	26	84	3	68	32	15	19	32	1.93
11119877--11119952	34	2.2	34	85	0	98	39	35	13	11	1.81
11122032--11122111	24	3.4	23	89	8	117	16	33	0	50	1.45
11122855--11122901	16	2.8	17	78	15	53	70	2	2	25	1.10
11123717--11123760	19	2.3	18	88	7	61	31	0	0	68	0.90
11123717--11123761	18	2.3	18	85	11	54	31	0	0	68	0.89
11125183--11125208	12	2.2	12	100	0	52	38	7	34	19	1.80
11128422--11128462	20	2.0	20	100	0	82	46	29	14	9	1.77
11130557--11130581	12	2.1	12	100	0	50	48	32	8	12	1.69
11140221--11141178	476	2.0	477	97	0	1810	30	13	17	38	1.88
11142167--11142263	40	2.4	39	79	6	104	32	18	23	24	1.97
11142306--11142460	41	3.9	41	77	16	173	21	21	27	29	1.99
11142309--11142458	76	2.0	76	85	5	205	21	21	28	29	1.98
11142789--11142831	15	2.9	15	86	3	61	32	0	27	39	1.57
11142823--11142874	21	2.5	21	84	9	63	21	0	40	38	1.53
11143041--11143206	7	23.4	7	71	9	77	21	1	28	48	1.61
11148202--11148719	101	5.1	101	99	0	1018	42	9	11	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11148704--11148811	42	2.6	42	88	2	146	23	11	28	37	1.89
11149273--11149329	28	2.0	28	100	0	114	28	17	21	33	1.96
11153476--11153506	9	3.4	9	90	0	53	25	12	22	38	1.90
11153784--11153843	30	2.0	31	83	9	79	20	38	1	40	1.62
11162134--11162204	1	71.0	1	100	0	142	100	0	0	0	0.00
11163136--11163161	6	4.3	6	100	0	52	34	15	0	50	1.45
11175323--11175355	4	8.2	4	100	0	66	24	0	24	51	1.48
11175394--11175474	23	3.5	23	76	6	92	34	8	18	38	1.82
11175394--11175485	23	4.0	23	76	8	71	36	8	17	36	1.81
11176513--11176548	13	2.8	13	100	0	72	22	8	27	41	1.82
11176512--11176555	13	3.4	13	90	0	61	31	6	25	36	1.82
11176714--11176824	50	2.2	50	100	0	222	28	13	20	36	1.91
11177460--11177520	31	2.0	31	93	0	104	37	8	9	44	1.68
11184743--11184875	66	2.0	66	100	0	266	22	24	27	25	2.00
11189211--11189291	25	3.2	25	78	3	92	23	14	24	37	1.93
11189319--11189369	25	2.0	25	92	0	84	31	15	19	33	1.93
11198639--11198687	21	2.3	22	78	3	55	32	18	4	44	1.68
11205837--11205896	31	1.9	31	89	0	93	38	13	3	45	1.60
11205968--11206001	8	4.2	8	92	0	59	35	11	14	38	1.83
11208790--11208863	36	2.1	36	84	5	96	22	18	35	22	1.96
11217389--11217423	18	1.9	18	88	11	54	57	8	2	31	1.44
11220018--11220075	27	2.2	26	78	9	64	17	22	22	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11237533--11237783	27	9.3	27	76	3	155	38	19	19	22	1.94
11237533--11237878	54	6.4	54	78	7	204	36	18	21	23	1.95
11237534--11237740	81	2.6	81	77	7	197	39	19	19	21	1.92
11237681--11237942	27	9.7	27	81	2	287	33	19	22	24	1.97
11237981--11238062	24	3.5	24	73	8	78	19	6	24	50	1.70
11238126--11238188	27	2.4	27	82	10	76	20	26	20	31	1.98
11238144--11238196	27	2.0	27	81	7	63	22	26	20	30	1.98
11238178--11238231	26	2.1	26	89	0	81	16	20	25	37	1.93
11238188--11238243	26	2.2	26	83	0	67	14	19	30	35	1.91
11238237--11238436	32	6.3	32	85	2	251	23	19	19	38	1.93
11246711--11246755	22	2.0	22	100	0	90	17	22	0	60	1.37
11250781--11250829	21	2.3	21	96	0	89	38	12	18	30	1.87
11258964--11259031	34	2.0	34	82	5	84	29	19	26	25	1.98
11264006--11264042	19	1.9	19	89	10	58	13	13	8	64	1.48
11270694--11270905	30	7.1	30	100	0	424	19	6	36	36	1.78
11283803--11283849	22	2.1	22	81	14	53	36	27	6	29	1.82
11286550--11286606	19	3.2	19	70	27	61	26	12	15	45	1.82
11288467--11288523	30	2.0	29	82	6	71	31	21	0	47	1.51
11291988--11292121	50	2.7	50	92	0	241	28	17	24	29	1.97
11294663--11294693	10	3.0	10	90	9	53	48	12	0	38	1.42
11294965--11295081	50	2.3	50	85	5	146	35	13	17	33	1.89
11296727--11296756	11	2.7	11	94	0	51	46	0	3	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11304084--11304401	43	7.5	43	74	10	255	35	24	16	23	1.94
11304084--11304366	85	3.3	85	92	0	469	34	25	16	24	1.95
11304084--11304404	85	3.8	84	89	2	446	35	25	15	23	1.95
11304378--11304430	26	2.0	26	88	0	79	32	33	15	18	1.92
11304768--11304826	30	2.0	30	86	0	82	28	25	5	40	1.77
11323370--11323416	20	2.4	19	82	10	58	25	14	4	55	1.58
11326126--11326163	18	2.1	18	85	9	51	21	2	2	73	1.07
11327059--11327246	94	2.0	94	91	2	306	40	12	21	26	1.88
11330416--11330456	21	2.0	21	95	0	73	26	21	31	19	1.97
11336210--11336378	50	3.4	50	89	1	248	27	23	14	34	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145