genome.fa.s13.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  131  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42888841--42888882	13	3.5	12	90	9	68	4	16	0	78	0.91
42888822--42888903	44	1.9	43	85	7	114	2	19	0	78	0.87
42889964--42890126	30	5.5	29	78	6	130	41	4	19	34	1.73
42889964--42890126	59	2.7	59	77	8	152	41	4	19	34	1.73
42900477--42900530	25	2.3	25	75	18	62	53	7	3	35	1.47
42901244--42901312	31	2.3	29	80	11	79	59	0	4	36	1.17
42911227--42911464	117	2.0	117	100	0	476	28	22	17	31	1.97
42912156--42912683	263	2.0	264	99	0	1049	37	15	17	29	1.90
42915624--42915687	27	2.4	27	97	0	119	17	23	39	20	1.92
42915704--42915744	19	2.2	19	95	0	73	31	0	17	51	1.46
42920497--42920656	78	2.0	79	98	1	313	45	5	5	45	1.47
42927779--42927812	14	2.2	16	90	10	54	41	0	0	58	0.98
42935743--42935778	16	2.2	16	100	0	72	38	36	0	25	1.56
42937491--42937683	97	2.0	100	86	6	279	54	11	5	27	1.58
42940455--42940485	14	2.2	14	94	0	53	25	9	0	64	1.24
42940771--42940796	2	13.0	2	100	0	52	50	0	0	50	1.00
42941591--42941651	3	20.3	3	100	0	122	67	0	32	0	0.91
42946907--42947094	85	2.2	85	96	0	340	32	21	13	32	1.92
42947302--42947447	64	2.3	64	89	4	224	41	11	19	26	1.86
42956403--42956436	17	1.9	17	88	5	50	47	5	14	32	1.69
42968664--42968758	31	3.2	30	77	8	104	48	5	2	44	1.37
42974338--42974457	59	2.0	59	100	0	240	46	25	6	21	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42975562--42975637	29	2.6	29	89	0	107	36	7	3	51	1.50
42976037--42976061	13	1.9	13	100	0	50	28	0	24	48	1.52
42982466--42982500	18	1.9	18	94	0	61	5	31	34	28	1.81
42989506--42989557	22	2.3	23	86	6	70	28	25	0	46	1.53
42997036--42997084	20	2.4	20	79	3	53	18	10	12	59	1.60
43001229--43001307	31	2.6	30	82	11	90	43	2	2	51	1.28
43008427--43008464	4	9.8	4	82	5	51	21	0	2	76	0.91
43008502--43008539	15	2.6	15	91	4	60	15	5	5	73	1.19
43009312--43009338	14	1.9	14	100	0	54	25	29	14	29	1.95
43010148--43010193	16	2.7	18	76	10	51	17	2	10	69	1.27
43010136--43010196	12	5.3	12	72	18	58	16	1	8	73	1.14
43014989--43015135	33	4.4	33	72	7	109	28	23	14	33	1.94
43014909--43015167	101	2.6	101	82	3	292	27	23	16	32	1.96
43016483--43016535	23	2.5	20	75	24	54	64	1	11	22	1.36
43019902--43020014	21	5.3	21	63	12	68	42	14	24	18	1.87
43019871--43020044	43	4.0	43	100	0	348	42	13	22	20	1.88
43020453--43020481	14	2.0	15	93	6	51	68	0	0	31	0.89
43020983--43021012	15	2.0	15	100	0	60	46	0	6	46	1.29
43032518--43032732	39	5.5	39	95	0	367	27	28	26	16	1.97
43036454--43036708	127	2.0	128	98	0	494	23	5	23	47	1.71
43049937--43050055	20	5.9	20	77	3	114	13	32	19	34	1.90
43062718--43062767	7	7.0	7	75	20	50	28	2	30	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43069352--43069428	3	25.7	3	79	10	86	31	6	0	62	1.21
43073947--43073986	21	1.9	21	94	0	71	57	2	7	32	1.40
43075474--43075499	13	2.0	13	100	0	52	76	0	0	23	0.78
43077039--43077695	44	14.6	44	78	5	465	32	17	19	30	1.95
43077039--43077738	88	7.8	88	78	6	570	32	17	19	30	1.95
43077039--43077667	227	2.8	225	83	1	740	32	17	19	30	1.95
43078269--43078308	21	1.9	21	84	0	53	72	5	7	15	1.24
43089445--43089804	181	2.0	181	94	0	630	23	20	17	38	1.93
43093659--43093841	71	2.6	71	81	0	204	30	18	20	31	1.96
43099060--43099087	3	9.3	3	100	0	56	32	0	0	67	0.91
43112105--43112163	21	2.8	21	89	0	91	37	3	20	38	1.69
43112147--43112191	18	2.5	18	89	7	65	37	8	17	35	1.81
43112326--43112370	18	2.5	18	82	7	56	15	15	42	26	1.87
43117718--43117743	2	13.0	2	100	0	52	50	0	0	50	1.00
43122286--43122315	7	4.1	7	95	4	51	0	20	0	80	0.72
43126437--43126476	21	2.0	20	85	5	53	45	2	0	52	1.14
43128638--43128673	17	2.1	18	89	5	56	36	2	33	27	1.72
43135286--43135429	48	3.0	48	93	2	245	29	29	11	29	1.92
43143825--43143850	2	13.0	2	100	0	52	0	0	50	50	1.00
43148506--43148556	27	1.9	27	84	11	70	60	15	15	7	1.56
43151029--43151061	17	1.9	17	93	0	57	48	24	6	21	1.72
43151740--43151778	19	2.1	19	85	4	53	33	7	5	53	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43154738--43154797	29	2.1	30	87	6	88	65	3	6	25	1.33
43155334--43155578	111	2.2	111	83	5	307	31	21	16	30	1.96
43156461--43156511	25	2.0	25	100	0	102	39	11	11	37	1.79
43158315--43158345	15	2.1	15	93	0	53	12	6	22	58	1.58
43165575--43165653	36	2.2	35	80	6	86	32	25	16	25	1.96
43165669--43165708	19	2.1	19	85	0	53	22	10	32	35	1.87
43168844--43168981	72	2.0	68	85	8	188	31	19	13	35	1.90
43169066--43169098	13	2.4	14	90	5	50	63	0	3	33	1.10
43189435--43189501	19	3.5	19	83	4	98	34	28	7	29	1.85
43189433--43189488	20	2.9	19	83	2	76	37	28	7	26	1.83
43194216--43194250	17	1.9	18	88	11	54	54	0	0	45	0.99
43200442--43200466	7	3.6	7	100	0	50	40	0	0	60	0.97
43201659--43201688	15	2.0	15	100	0	60	33	6	13	46	1.69
43208328--43208370	21	2.1	20	91	4	68	25	6	0	67	1.15
43208381--43209078	348	2.0	349	99	0	1380	34	16	12	36	1.86
43209916--43209946	16	1.9	16	100	0	62	35	0	0	64	0.94
43211440--43211489	20	2.5	20	81	12	57	44	0	2	54	1.11
43214556--43214587	16	1.9	17	93	6	57	84	0	12	3	0.74
43217050--43217115	7	9.7	7	75	17	59	57	1	0	40	1.08
43230982--43231017	14	2.6	14	90	0	54	25	22	11	41	1.86
43252471--43252517	18	2.6	18	79	0	58	25	19	27	27	1.99
43268087--43268305	109	2.0	109	97	0	411	25	20	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43268894--43269359	124	3.8	124	92	1	783	29	14	21	34	1.93
43268894--43269359	246	1.9	247	96	0	862	29	14	21	34	1.93
43272184--43272239	22	2.5	22	94	2	94	41	0	30	28	1.57
43272224--43272256	10	3.0	11	86	13	50	45	0	36	18	1.49
43280418--43280471	24	2.3	24	83	3	65	38	0	7	53	1.29
43281923--43282709	3	262.3	3	100	0	1574	66	0	0	33	0.92
43286679--43286738	23	2.5	24	76	13	70	31	1	0	66	1.01
43289524--43289583	29	2.1	28	85	14	79	65	5	6	23	1.37
43289519--43289585	28	2.4	26	81	16	73	61	5	5	26	1.43
43290175--43290214	21	2.0	21	90	5	64	30	7	0	62	1.23
43291750--43291775	13	2.0	13	100	0	52	38	15	23	23	1.92
43294009--43294250	112	2.2	111	84	5	310	30	21	18	30	1.96
43299500--43299548	19	2.4	21	80	16	59	32	4	0	63	1.13
43313568--43313640	34	2.2	33	85	2	92	9	6	12	71	1.31
43319597--43319660	17	3.6	19	78	19	68	76	0	7	15	1.00
43319605--43319648	10	4.8	9	83	11	54	77	0	9	13	0.99
43319605--43319661	22	2.6	22	78	8	62	78	0	7	14	0.94
43332321--43332480	71	2.3	71	89	0	239	31	14	15	38	1.88
43336364--43336440	37	2.1	37	100	0	154	22	14	25	37	1.92
43343709--43343864	77	2.0	78	98	1	305	46	5	6	41	1.51
43346206--43346235	15	1.9	16	93	6	53	23	3	0	73	0.98
43346621--43346647	11	2.5	11	100	0	54	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43351873--43351902	6	5.0	6	100	0	60	16	16	50	16	1.79
43352623--43352649	2	13.5	2	100	0	54	51	0	0	48	1.00
43354541--43354588	24	2.0	24	100	0	96	45	29	8	16	1.76
43358444--43358603	71	2.3	71	93	0	266	30	13	16	38	1.88
43360173--43360203	3	10.3	3	100	0	62	64	0	0	35	0.94
43361241--43361270	6	4.8	6	95	4	51	0	13	3	83	0.77
43363524--43363564	20	2.0	20	100	0	82	56	0	24	19	1.42
43367833--43367892	23	2.5	25	81	10	72	33	3	0	63	1.11
43371679--43371742	21	3.0	21	88	0	83	39	18	25	17	1.92
43387089--43387133	23	2.0	22	87	8	65	40	4	2	53	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145