genome.fa.s13.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  99  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33631225--33631283	14	4.0	15	80	8	59	13	1	5	79	0.97
33631211--33631286	14	5.1	14	75	15	55	17	2	3	76	1.06
33645359--33645392	17	2.0	17	94	0	59	17	20	0	61	1.34
33646213--33646255	22	2.0	21	82	8	52	53	4	34	6	1.49
33657595--33657670	10	7.5	11	72	19	51	40	2	1	55	1.22
33657595--33657668	38	2.0	37	84	7	96	40	2	1	55	1.22
33658696--33658771	10	7.5	11	72	19	51	40	2	1	55	1.22
33658696--33658769	38	2.0	37	84	7	96	40	2	1	55	1.22
33661723--33661760	14	2.7	14	95	0	67	26	55	5	13	1.59
33665446--33665528	18	4.6	18	76	5	78	46	24	14	14	1.81
33668809--33668864	29	1.9	29	89	7	87	41	14	8	35	1.77
33668889--33668925	19	1.9	19	88	0	56	35	18	8	37	1.81
33674708--33675125	207	2.0	208	99	0	829	42	10	15	31	1.80
33676251--33676283	13	2.3	15	90	10	52	12	0	9	78	0.95
33678988--33679047	30	2.0	30	100	0	120	20	3	13	63	1.43
33686270--33686306	9	4.0	10	86	13	53	48	8	10	32	1.67
33693616--33693653	19	2.0	19	94	0	67	36	18	10	34	1.85
33694941--33694965	6	4.2	6	100	0	50	16	16	68	0	1.22
33695629--33695694	32	2.1	32	97	0	123	42	12	10	34	1.77
33702085--33702125	21	2.0	21	85	9	57	26	7	14	51	1.69
33702510--33702622	38	3.1	36	87	6	163	8	22	11	57	1.61
33704892--33705004	45	2.6	46	80	15	136	32	27	4	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33704984--33705032	16	3.1	16	87	0	71	24	34	4	36	1.75
33706855--33706896	16	2.7	15	85	7	57	38	2	2	57	1.25
33706967--33707101	19	7.1	19	68	24	72	56	12	0	31	1.37
33707097--33707163	27	2.5	27	97	0	125	11	32	23	31	1.91
33709018--33709076	28	2.1	28	80	0	64	54	3	6	35	1.44
33709383--33709412	13	2.3	13	94	0	51	56	6	13	23	1.60
33711799--33711823	11	2.3	11	100	0	50	28	0	16	56	1.41
33712913--33712944	2	16.0	2	100	0	64	0	50	0	50	1.00
33716098--33716179	42	2.0	42	90	4	130	39	17	12	31	1.86
33717638--33717663	12	2.2	12	100	0	52	69	15	0	15	1.20
33717867--33717931	33	2.0	33	84	6	87	61	29	4	4	1.36
33717900--33717937	12	3.2	12	77	7	51	71	23	2	2	1.12
33717899--33717962	23	2.7	24	82	4	85	62	31	3	3	1.26
33718856--33718918	30	2.1	31	87	3	92	33	0	49	17	1.47
33724006--33724530	50	10.5	50	73	3	383	23	19	22	33	1.97
33724054--33724562	101	5.1	100	80	6	537	23	20	23	32	1.98
33724054--33724563	200	2.5	200	88	2	738	23	20	23	32	1.97
33724548--33725678	131	8.8	131	89	3	1699	25	23	21	29	1.99
33725065--33725293	113	2.0	114	89	2	352	26	21	21	30	1.99
33724548--33725678	375	2.9	384	87	5	1548	25	23	21	29	1.99
33725581--33725764	87	2.1	86	90	1	287	27	21	22	28	1.99
33725450--33725895	217	2.1	218	89	1	671	25	22	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33725667--33726245	131	4.4	131	90	0	870	25	23	21	29	1.99
33725314--33726027	348	2.1	349	89	2	1098	25	22	21	29	1.99
33726188--33726272	44	1.9	44	85	4	118	27	25	21	25	1.99
33726205--33726684	44	11.0	43	78	5	460	22	26	20	30	1.98
33725912--33726572	132	5.0	132	78	7	325	23	25	21	30	1.99
33726214--33726684	88	5.4	88	91	1	707	21	26	21	30	1.98
33727978--33728022	23	2.0	23	86	8	65	15	8	0	75	1.03
33743277--33743476	63	3.2	63	79	7	192	27	28	19	25	1.98
33752761--33752785	12	2.1	12	100	0	50	24	52	8	16	1.70
33763480--33763509	12	2.6	11	90	10	51	40	3	10	46	1.54
33768325--33768390	30	2.2	30	91	0	105	19	31	36	12	1.89
33768915--33769050	40	3.4	40	77	10	125	36	16	28	18	1.93
33774782--33774821	18	2.2	18	86	13	55	62	5	12	20	1.48
33775713--33775878	40	4.2	39	76	5	145	33	16	27	22	1.95
33775713--33775878	80	2.1	80	83	0	206	33	16	27	22	1.95
33784884--33784933	21	2.3	23	83	13	61	70	2	0	28	0.99
33793238--33793295	30	1.9	30	100	0	116	24	22	13	39	1.90
33801572--33801611	16	2.4	17	91	4	64	0	12	2	85	0.71
33802600--33802663	25	2.6	25	78	9	60	50	3	3	43	1.33
33809742--33809773	17	1.9	17	93	6	57	34	0	0	65	0.93
33826762--33826793	17	1.9	17	93	6	57	34	0	0	65	0.93
33829192--33829234	15	2.6	16	85	10	52	53	13	4	27	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33830433--33830477	13	3.4	14	85	11	60	2	24	0	73	0.95
33830447--33830498	21	2.5	20	78	9	59	3	23	1	71	1.13
33835453--33835486	11	3.2	11	87	4	52	26	20	11	41	1.87
33837205--33837241	12	3.1	12	96	0	65	45	0	2	51	1.15
33839188--33839219	15	2.1	15	94	0	55	40	6	9	43	1.62
33840859--33840940	25	3.3	25	81	10	89	39	17	13	30	1.88
33844515--33844559	17	2.6	18	80	13	51	66	2	6	24	1.27
33846587--33846989	44	8.6	45	67	14	179	26	24	20	28	1.99
33846542--33846990	143	3.2	143	88	1	634	26	24	19	29	1.99
33851524--33851582	29	2.0	29	93	0	100	20	22	8	49	1.75
33853837--33853889	24	2.2	25	82	3	63	11	18	24	45	1.82
33855361--33855553	94	2.0	95	98	1	379	44	11	11	33	1.76
33856228--33856280	3	17.7	3	80	7	63	66	3	3	26	1.26
33859057--33859107	18	2.8	19	79	8	61	45	1	13	39	1.55
33859505--33859615	42	2.7	42	84	1	143	42	19	22	15	1.89
33859533--33859596	21	3.0	21	65	0	56	48	20	18	12	1.80
33863679--33863704	10	2.6	10	100	0	52	11	34	11	42	1.77
33867276--33867311	5	6.8	5	93	6	54	25	0	0	75	0.81
33874178--33874327	75	2.0	75	98	0	291	44	10	4	40	1.58
33892888--33893348	138	3.3	138	84	1	550	32	22	16	28	1.96
33900182--33900329	73	2.0	73	92	0	242	41	16	10	31	1.83
33900198--33900348	73	2.1	72	85	5	196	43	13	11	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33913298--33913374	38	2.0	38	94	0	136	32	41	0	25	1.56
33913748--33913874	20	6.3	20	81	0	155	35	20	33	11	1.88
33913748--33913874	60	2.1	60	89	0	191	35	20	33	11	1.88
33917525--33917719	50	3.9	50	78	2	169	22	28	21	27	1.99
33920716--33920994	139	2.0	140	99	0	551	34	11	8	45	1.71
33922063--33922107	21	2.1	22	91	4	74	26	17	22	33	1.96
33922737--33922853	28	4.1	28	82	3	119	50	5	19	23	1.70
33923996--33924037	21	2.0	21	95	0	75	45	0	7	47	1.30
33924374--33924413	17	2.3	18	87	8	57	47	12	5	35	1.63
33924909--33924981	29	2.7	27	72	16	69	28	5	0	65	1.14
33924992--33925050	20	2.9	20	82	9	75	30	1	3	64	1.20
33924967--33925077	22	5.2	21	73	15	77	30	3	1	63	1.21
33925154--33925245	30	3.1	30	81	4	80	27	9	22	40	1.85
33925199--33925273	29	2.6	29	89	2	107	26	8	18	46	1.77
33926874--33927011	41	3.5	39	77	2	141	39	18	20	21	1.93
33927050--33927268	41	5.3	41	87	7	282	21	21	28	28	1.99
33927396--33927423	14	2.0	14	100	0	56	0	42	0	57	0.99
33932185--33932346	43	3.8	43	84	4	193	25	18	26	29	1.98
33933004--33933039	16	2.2	16	95	0	63	25	2	36	36	1.70
33933025--33933110	44	1.9	44	83	6	111	27	5	31	34	1.81
33939732--33939766	17	2.1	17	94	5	63	68	8	11	11	1.39
33947156--33947194	16	2.4	16	82	0	51	35	10	2	51	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33950548--33950605	9	6.7	9	79	13	50	82	10	0	6	0.83
33950548--33950611	18	3.7	17	80	15	78	81	10	0	7	0.88
33950548--33950611	16	3.8	17	82	17	80	81	10	0	7	0.88
33950551--33950606	23	2.4	24	80	11	64	82	10	0	7	0.85
33951108--33951147	19	2.1	19	95	0	71	50	5	27	17	1.67
33951450--33951488	16	2.5	15	88	12	60	76	0	10	12	1.01
33954713--33954850	44	3.2	43	67	11	118	25	22	26	25	2.00
33954642--33954863	44	5.0	43	63	14	112	25	22	25	26	2.00
33954646--33954890	88	2.8	88	91	0	409	26	22	26	24	2.00
33954915--33955239	50	6.5	50	94	0	508	29	21	22	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145