genome.fa.s13.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  54  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18825177--18825203	2	13.5	2	100	0	54	0	48	0	51	1.00
18832371--18832422	14	3.8	14	87	5	79	30	3	0	65	1.10
18832366--18832421	27	2.0	29	93	6	98	32	1	0	66	1.03
18832367--18832431	27	2.3	28	86	5	87	30	4	0	64	1.14
18833967--18834038	19	3.7	19	89	7	108	34	12	15	37	1.85
18834764--18834795	12	2.8	12	90	9	50	87	0	6	6	0.67
18834763--18834804	17	2.5	17	84	0	57	83	0	11	4	0.79
18849204--18849246	12	3.6	12	80	0	50	23	37	25	13	1.92
18859065--18859112	22	2.3	22	85	7	64	62	6	4	27	1.38
18871280--18871304	13	1.9	13	100	0	50	24	12	40	24	1.88
18871317--18871770	44	10.0	44	76	7	372	30	19	21	28	1.97
18871317--18871728	93	4.5	92	74	13	318	31	19	21	27	1.97
18871297--18871728	137	3.1	137	89	2	636	31	18	21	27	1.97
18881605--18881716	37	2.9	38	78	4	118	31	16	16	36	1.90
18881704--18881813	39	2.8	39	84	5	168	26	18	24	30	1.98
18885701--18885733	16	1.9	18	88	11	52	54	9	0	36	1.32
18889444--18889496	23	2.3	23	83	0	61	47	5	0	47	1.26
18889687--18889730	21	2.0	22	83	12	56	47	4	2	45	1.35
18894080--18894120	8	5.2	8	94	2	66	36	2	9	51	1.48
18897776--18897806	16	1.9	16	93	0	53	19	6	35	38	1.77
18898011--18898047	6	6.0	6	87	6	56	29	2	0	67	1.04
18898009--18898047	19	2.1	19	95	0	69	28	5	0	66	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18898011--18898061	27	2.0	25	92	7	84	27	3	0	68	1.07
18899985--18900046	24	2.5	24	81	2	70	37	20	8	33	1.83
18906027--18906078	27	2.0	25	88	7	77	1	36	1	59	1.19
18906299--18906363	22	3.0	21	73	10	60	70	1	18	9	1.21
18910578--18910602	12	2.1	12	100	0	50	40	16	8	36	1.77
18916903--18916927	12	2.1	12	100	0	50	40	16	8	36	1.77
18917246--18917272	13	2.1	13	100	0	54	33	7	0	59	1.25
18933035--18933068	14	2.4	14	100	0	68	52	11	23	11	1.70
18940432--18940475	21	2.2	20	84	12	54	50	4	4	40	1.43
18942046--18942096	24	2.2	24	86	10	70	33	5	5	54	1.48
18945696--18945764	27	2.6	27	83	0	84	37	11	23	27	1.89
18946756--18946793	19	2.0	19	100	0	76	31	0	26	42	1.56
18947975--18948054	23	3.5	22	74	16	72	40	13	21	25	1.90
18954374--18954403	13	2.3	13	94	0	51	56	6	6	30	1.51
18956219--18956252	16	2.1	16	88	0	50	23	23	0	52	1.47
18958606--18958740	29	4.7	29	78	0	144	35	23	14	26	1.93
18958606--18958740	58	2.3	58	80	0	162	35	23	14	26	1.93
18961739--18961888	31	4.8	30	70	14	99	34	4	16	44	1.68
18961675--18961894	92	2.4	92	90	0	343	34	5	16	43	1.73
18961903--18961968	31	2.1	31	86	5	89	30	9	13	46	1.74
18961675--18961961	92	3.1	92	85	4	276	32	6	17	43	1.73
18966101--18966150	20	2.5	21	84	15	70	54	0	22	24	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18970030--18970092	31	2.0	32	96	3	119	42	15	9	31	1.79
18976351--18976380	12	2.5	12	88	0	51	0	13	16	70	1.18
18986314--18986371	31	2.0	30	80	12	68	10	31	12	46	1.74
18987059--18987392	27	12.4	27	81	3	323	44	19	17	17	1.86
18987059--18987392	81	4.1	81	83	1	391	44	19	17	17	1.86
18987748--18987832	28	3.0	28	87	0	116	23	21	23	31	1.98
19004558--19004674	35	3.3	35	84	1	135	16	11	29	41	1.84
19007029--19007226	109	1.8	110	93	1	344	36	8	19	35	1.83
19009159--19009195	15	2.5	15	95	0	65	48	8	10	32	1.67
19009463--19009519	22	2.6	23	80	8	73	42	21	22	14	1.88
19009463--19009530	22	3.1	22	76	4	66	42	20	22	14	1.88
19009509--19009591	25	3.3	25	89	3	105	39	21	21	16	1.92
19009810--19009895	41	2.1	40	82	2	100	68	9	0	22	1.17
19009944--19009994	27	2.0	27	88	7	79	60	1	3	33	1.26
19010466--19010495	14	2.1	14	93	0	51	66	0	0	33	0.92
19010831--19010876	23	2.0	23	95	0	83	34	23	0	41	1.55
19011199--19011270	5	14.0	5	91	5	117	43	0	0	56	0.99
19013782--19013823	21	2.0	22	85	4	59	57	7	2	33	1.39
19014733--19014819	19	4.5	19	81	13	99	28	2	1	67	1.10
19015623--19015661	14	2.9	13	85	14	53	56	5	0	38	1.22
19015653--19015693	20	2.0	20	86	9	57	41	7	4	46	1.53
19023056--19023205	21	7.2	21	72	9	110	18	20	16	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19023050--19023205	42	3.7	41	76	8	145	18	20	16	44	1.86
19026706--19026901	51	3.9	49	79	4	196	25	16	27	30	1.97
19026897--19026995	46	2.2	43	81	12	110	24	18	25	32	1.97
19030714--19030755	19	2.3	18	84	8	50	42	33	0	23	1.55
19032317--19032387	37	1.9	37	97	0	133	40	14	2	42	1.60
19033636--19033691	25	2.2	25	80	6	58	37	25	21	16	1.93
19033704--19033768	24	2.6	25	81	11	73	29	26	26	18	1.98
19037420--19037510	45	2.0	45	100	0	182	30	10	31	26	1.91
19043268--19043305	20	1.9	20	84	10	51	42	10	5	42	1.62
19044628--19044667	21	2.0	20	85	5	53	60	20	2	17	1.48
19051224--19051667	218	2.0	219	85	5	601	27	18	15	38	1.90
19059893--19059953	32	1.9	32	83	12	81	44	3	3	49	1.35
19082346--19082411	27	2.5	27	87	2	98	34	22	24	18	1.96
19082613--19082664	27	1.9	27	84	0	68	32	21	13	32	1.92
19082651--19082780	27	4.8	27	78	5	102	33	12	16	36	1.87
19091032--19091067	14	2.6	14	100	0	72	61	0	5	33	1.19
19092832--19092930	17	5.7	17	69	13	67	20	26	41	12	1.87
19092803--19092918	52	2.3	53	85	10	154	21	28	37	12	1.89
19098892--19098922	16	1.9	16	93	0	53	35	12	16	35	1.87
19098742--19099332	296	2.0	296	96	0	1094	35	13	16	35	1.88
19099995--19100027	13	2.5	13	95	0	57	27	36	30	6	1.81
19105067--19105109	20	2.2	20	82	0	50	18	4	2	74	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19106825--19106884	19	3.1	19	75	18	52	21	3	5	70	1.22
19109593--19109623	14	2.2	14	94	0	53	38	0	12	48	1.42
19110539--19110600	29	2.2	29	85	2	81	22	14	16	46	1.83
19128478--19128866	195	2.0	196	99	0	771	31	16	13	38	1.88
19129448--19129540	1	93.0	1	69	0	60	84	7	5	2	0.83
19129448--19129541	12	7.7	12	75	13	84	84	8	5	2	0.86
19130037--19130075	15	2.6	16	88	12	64	69	0	17	12	1.19
19130045--19130077	8	4.1	8	85	14	50	66	0	21	12	1.23
19131391--19132367	99	9.9	99	94	1	1564	28	23	27	20	1.99
19131399--19132364	50	19.5	49	67	5	431	28	23	26	20	1.99
19132141--19132415	50	5.5	49	70	5	160	30	22	24	23	1.99
19133728--19133770	18	2.4	19	81	11	56	32	0	2	65	1.06
19136150--19136178	3	9.7	3	100	0	58	0	65	0	34	0.93
19139071--19139332	133	2.0	134	81	3	314	29	16	17	37	1.91
19144672--19144700	11	2.5	12	88	11	51	0	6	6	86	0.72
19150151--19150321	85	2.0	85	83	2	218	28	15	17	39	1.90
19151457--19151507	5	9.8	5	91	4	66	78	0	21	0	0.75
19155827--19155875	26	1.9	26	87	4	73	65	12	10	12	1.48
19155821--19155880	25	2.4	24	78	8	66	66	11	8	13	1.44
19157942--19158226	75	3.8	76	85	5	355	43	4	8	43	1.55
19163044--19163074	16	1.9	16	93	0	53	41	0	16	41	1.48
19163132--19163165	16	2.1	16	88	0	50	41	2	20	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19168806--19168842	18	2.1	17	90	10	56	32	0	5	62	1.18
19169015--19169056	14	3.2	13	87	12	68	35	0	2	61	1.09
19173606--19173648	19	2.3	19	79	0	50	81	6	6	4	0.98
19173592--19173694	31	3.2	31	80	12	102	73	7	7	10	1.24
19175667--19176225	50	11.2	50	69	3	343	33	23	20	22	1.97
19175666--19176326	100	6.6	100	82	1	646	33	22	19	23	1.97
19179010--19179066	6	9.2	6	77	7	51	14	7	5	73	1.21
19179092--19179145	3	18.0	3	100	0	108	33	0	0	66	0.92
19183605--19183663	6	9.3	6	78	10	64	77	1	16	3	0.98
19183605--19183663	13	4.7	12	79	10	64	77	1	16	3	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145