genome.fa.s13.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  19  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7062649--7062696	21	2.3	21	85	7	62	35	0	8	56	1.30
7062716--7062785	29	2.3	29	85	4	86	32	8	15	42	1.77
7062737--7062795	29	2.0	30	93	3	102	28	6	15	49	1.70
7063270--7063313	14	3.1	14	81	15	54	40	0	0	59	0.98
7064800--7064895	44	2.2	45	96	1	176	44	13	13	28	1.81
7068030--7068102	38	1.9	36	83	10	92	56	1	1	41	1.16
7069066--7069203	57	2.4	56	83	9	152	50	4	0	44	1.27
7072021--7072050	7	4.3	7	100	0	60	60	13	0	26	1.34
7072089--7072156	34	2.0	34	97	0	127	45	20	13	20	1.84
7073695--7073727	16	2.1	16	94	0	57	48	27	9	15	1.74
7078332--7078667	50	6.7	50	67	5	221	29	20	25	25	1.99
7078332--7078749	100	4.2	100	92	1	651	29	20	24	25	1.99
7092112--7092348	115	2.1	115	96	0	440	33	21	16	27	1.95
7099672--7099720	23	2.1	22	81	7	53	53	2	6	38	1.38
7100687--7100722	2	18.0	2	100	0	72	0	50	0	50	1.00
7102708--7102736	2	14.5	2	100	0	58	51	0	0	48	1.00
7103733--7103757	2	12.5	2	100	0	50	48	0	0	52	1.00
7110453--7110496	7	6.0	7	89	5	52	0	13	0	86	0.57
7110453--7110496	12	4.0	11	82	11	54	0	13	0	86	0.57
7112308--7112365	26	2.3	25	88	5	89	70	1	0	27	0.97
7128428--7128471	22	2.0	23	86	4	63	45	0	6	47	1.29
7131631--7131671	13	3.3	13	81	18	52	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7132639--7132671	2	16.5	2	93	0	57	0	51	3	45	1.16
7135523--7135550	1	28.0	1	100	0	56	0	0	0	100	0.00
7143141--7143243	54	1.9	54	97	0	197	30	32	21	16	1.95
7147615--7147661	3	15.7	3	100	0	94	34	0	0	65	0.93
7174747--7174994	127	2.0	126	89	3	383	30	5	8	56	1.52
7174956--7175007	13	3.6	15	78	21	58	25	1	0	73	0.94
7176623--7176673	18	2.9	17	80	13	50	54	0	7	37	1.29
7178718--7178980	4	65.8	4	99	0	508	49	24	0	25	1.55
7183317--7183341	8	3.1	8	100	0	50	0	24	12	64	1.27
7184565--7184598	2	17.0	2	100	0	68	50	0	50	0	1.00
7196279--7196374	10	10.8	9	67	21	51	63	1	4	31	1.20
7196300--7196393	17	5.2	18	80	7	95	61	0	5	32	1.18
7196341--7196394	20	2.8	20	84	15	69	62	0	5	31	1.18
7196593--7196716	21	6.0	21	71	17	73	41	4	1	52	1.30
7196623--7196720	39	2.4	38	79	12	99	45	3	1	50	1.24
7196602--7196713	20	5.6	19	74	12	82	42	3	1	51	1.29
7202099--7202123	2	12.5	2	100	0	50	0	48	0	52	1.00
7203628--7203652	11	2.3	11	100	0	50	72	0	0	28	0.86
7210375--7210411	18	2.0	19	89	5	58	64	0	0	35	0.94
7210419--7210498	40	2.0	39	80	9	90	56	6	0	37	1.25
7230730--7230764	18	1.9	18	88	0	52	8	42	0	48	1.33
7244450--7244529	29	2.8	28	78	16	83	35	2	1	61	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7244445--7244537	29	3.2	28	76	10	73	33	2	2	62	1.19
7247071--7247121	25	2.0	25	100	0	102	11	0	39	49	1.40
7253803--7253852	24	2.1	24	84	0	64	42	0	4	54	1.19
7257310--7257407	48	2.0	49	98	2	189	30	12	26	30	1.92
7263878--7263928	13	3.9	13	78	0	66	35	25	7	31	1.85
7263878--7263930	26	2.0	26	88	0	79	35	24	7	32	1.84
7264321--7264371	23	2.2	23	82	6	59	37	3	0	58	1.16
7267805--7268104	163	1.8	163	100	0	600	28	17	17	36	1.93
7270879--7270937	29	2.0	29	83	3	73	32	5	11	50	1.61
7276123--7276162	15	2.5	16	84	8	55	85	5	10	0	0.75
7276651--7276680	16	1.9	15	93	6	51	0	40	13	46	1.43
7278399--7278469	28	2.4	30	79	13	76	66	1	1	30	1.09
7291529--7291611	23	3.7	23	85	6	109	44	20	16	18	1.87
7291769--7291801	17	1.9	17	93	0	57	27	21	3	48	1.64
7293053--7293196	33	4.3	33	68	13	105	27	23	16	31	1.96
7293027--7293266	101	2.4	101	90	1	356	27	22	16	33	1.95
7297638--7297756	58	2.1	58	93	0	202	47	13	24	15	1.81
7303402--7303592	101	1.9	101	84	0	256	34	15	21	28	1.94
7303402--7303614	101	2.1	101	80	3	232	35	15	20	27	1.94
7316074--7316143	28	2.5	26	79	6	68	45	5	2	45	1.41
7319121--7319249	64	2.0	64	95	0	231	24	23	15	37	1.93
7329300--7329336	5	7.4	5	93	0	65	62	16	0	21	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7330564--7330588	7	3.6	7	100	0	50	56	16	0	28	1.41
7331461--7331487	13	2.1	13	100	0	54	29	18	22	29	1.97
7332301--7332454	50	3.1	50	62	22	126	37	20	4	38	1.73
7332259--7332454	97	2.0	98	97	2	376	31	22	6	39	1.78
7338190--7338254	22	3.0	22	83	0	94	18	18	18	44	1.87
7341938--7341978	22	1.9	21	90	5	64	26	12	36	24	1.91
7346018--7346158	50	2.8	51	86	1	203	26	24	28	21	1.99
7348708--7348771	26	2.4	27	82	10	78	40	17	3	39	1.65
7367188--7367216	2	14.5	2	100	0	58	48	0	0	51	1.00
7367902--7367949	21	2.2	22	77	3	53	16	2	8	72	1.18
7368075--7368111	17	2.1	19	90	10	60	67	0	0	32	0.91
7370500--7370525	2	13.0	2	100	0	52	50	0	0	50	1.00
7376202--7376240	19	2.1	19	85	4	53	41	0	5	53	1.23
7380204--7380229	13	2.0	13	100	0	52	15	38	15	30	1.88
7380802--7380842	22	1.9	21	90	5	64	21	4	17	56	1.60
7386880--7386906	12	2.2	12	100	0	54	59	11	7	22	1.56
7389142--7389245	49	2.1	49	87	0	145	29	9	8	51	1.64
7390760--7390859	44	2.3	43	80	12	109	37	29	4	30	1.76
7390771--7390863	44	2.1	46	87	4	136	37	27	4	30	1.76
7391775--7391821	21	2.2	21	81	7	60	21	2	8	68	1.27
7394281--7394318	11	3.5	11	85	0	58	47	0	0	52	1.00
7395035--7395072	11	3.5	11	85	0	58	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7395209--7395258	25	2.0	25	92	0	82	28	22	34	16	1.95
7403057--7403097	19	2.1	20	86	4	57	51	2	7	39	1.43
7426541--7426585	23	2.0	23	100	0	90	40	20	8	31	1.83
7428208--7428301	46	2.0	46	93	4	163	31	26	8	32	1.86
7431644--7431695	25	2.1	25	85	3	70	34	21	28	15	1.94
7432486--7432647	46	3.6	46	89	2	240	30	23	12	33	1.92
7436331--7436368	17	2.2	17	86	9	51	57	5	0	36	1.21
7437224--7437254	16	2.0	15	93	6	53	51	0	3	45	1.17
7437608--7437656	20	2.5	19	75	15	55	55	2	2	40	1.23
7437595--7437655	24	2.7	23	70	19	56	52	1	4	40	1.33
7437612--7437655	20	2.2	21	84	8	56	56	2	2	38	1.24
7445086--7445134	26	1.9	26	91	4	82	34	10	24	30	1.89
7450929--7450993	34	1.9	34	83	0	85	49	12	16	21	1.79
7461368--7461569	100	2.0	100	100	0	404	24	16	14	44	1.86
7467734--7467774	22	1.9	21	90	5	64	60	2	0	36	1.10
7471767--7471801	17	2.0	18	88	5	54	65	0	0	34	0.93
7483324--7483405	43	1.9	43	84	0	110	40	14	7	37	1.74
7485467--7485603	57	2.3	57	82	8	159	27	21	24	25	1.99
7491975--7492106	42	3.1	42	82	2	113	42	18	22	15	1.89
7492002--7492105	42	2.5	42	85	1	129	40	19	24	16	1.91
7492002--7492122	42	2.9	42	82	1	109	41	18	22	18	1.90
7493743--7493806	30	2.1	31	82	5	76	35	0	3	60	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7494866--7494989	46	2.7	46	94	0	221	29	22	12	34	1.92
7500661--7500705	21	2.2	20	80	11	54	48	4	2	44	1.35
7503200--7503239	20	2.0	20	86	13	57	77	5	7	10	1.11
7515954--7515981	3	9.3	3	100	0	56	0	0	64	35	0.94
7515912--7516058	45	3.1	45	84	8	150	12	6	55	25	1.59
7515912--7516014	54	1.9	54	100	0	206	9	3	58	28	1.48
7524053--7524171	57	2.1	58	95	1	213	27	5	15	50	1.67
7532597--7532645	20	2.4	21	83	10	57	34	0	10	55	1.34
7536205--7536263	25	2.4	24	83	8	75	23	28	10	37	1.88
7550603--7550798	21	9.3	21	92	0	275	15	24	16	43	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145