genome.fa.s13.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  76  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25766575--25767122	27	20.4	26	80	4	486	41	21	18	19	1.91
25767286--25767366	26	3.1	26	90	0	135	17	18	27	37	1.93
25769162--25769636	201	2.4	201	94	0	815	32	14	21	32	1.93
25783855--25783880	7	3.7	7	100	0	52	57	15	15	11	1.65
25786720--25786746	14	1.9	14	100	0	54	66	0	25	7	1.17
25786839--25786884	20	2.3	20	79	17	60	15	21	6	56	1.61
25787093--25787271	50	3.6	49	80	5	182	21	28	22	26	1.99
25791472--25791698	42	5.4	40	78	11	204	21	15	26	35	1.94
25791517--25791670	43	3.6	42	82	11	197	20	15	25	37	1.92
25791472--25791698	85	2.7	84	87	2	312	21	15	26	35	1.94
25798702--25798931	43	5.5	40	79	11	210	20	16	27	35	1.94
25798702--25798936	85	2.8	84	86	1	310	21	16	26	35	1.94
25802784--25802859	23	3.3	23	86	0	116	31	25	19	23	1.98
25804284--25804347	27	2.4	27	80	17	64	32	14	10	42	1.80
25808647--25808692	20	2.3	20	79	17	60	13	23	6	56	1.60
25808981--25809078	50	2.0	50	83	0	124	23	29	23	23	1.99
25813204--25813239	16	2.2	16	90	0	54	44	19	19	16	1.87
25814670--25814834	62	2.7	62	82	0	177	27	24	26	21	2.00
25828322--25828366	21	2.1	22	83	4	56	57	0	6	35	1.25
25828907--25829065	79	2.0	80	98	1	311	44	7	6	42	1.58
25831136--25831257	43	2.8	42	79	4	111	36	19	20	22	1.95
25832294--25832337	16	2.7	16	85	3	52	63	0	29	6	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25834979--25835034	21	2.8	20	72	2	58	57	1	3	37	1.27
25836051--25836129	31	2.5	30	86	11	106	45	3	20	30	1.68
25838224--25838266	21	2.0	21	86	0	59	32	13	2	51	1.54
25840153--25840678	260	2.0	261	94	0	919	38	8	19	33	1.82
25853956--25854087	66	2.0	66	100	0	264	27	16	21	34	1.95
25854322--25854440	24	5.0	24	89	0	166	15	12	26	44	1.83
25862175--25862391	90	2.4	90	83	3	258	31	15	19	33	1.93
25863965--25864003	20	2.0	20	94	0	69	53	2	0	43	1.14
25863970--25864061	37	2.4	36	79	15	98	54	3	2	40	1.29
25868089--25868151	30	2.1	28	83	13	74	49	4	11	34	1.59
25868197--25868248	25	2.1	24	82	13	61	57	1	0	40	1.10
25870357--25870403	3	15.7	3	95	0	85	31	2	0	65	1.04
25871964--25871992	13	2.2	13	100	0	58	68	0	0	31	0.89
25875596--25875836	50	4.7	50	80	4	216	27	21	27	23	1.99
25879561--25879617	27	2.1	27	100	0	114	22	0	29	47	1.52
25879985--25880062	40	2.0	40	86	0	111	19	28	17	34	1.95
25882105--25882165	31	2.0	31	93	0	104	34	14	9	40	1.79
25894987--25895038	15	3.4	15	91	2	77	55	3	0	40	1.18
25895458--25895505	21	2.2	22	82	10	55	22	6	12	58	1.57
25898710--25898910	27	7.4	27	87	0	258	23	17	23	34	1.96
25898712--25898938	81	2.8	81	85	2	305	25	16	23	34	1.95
25915898--25915969	34	2.2	33	84	2	90	29	2	8	59	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25923058--25923103	18	2.6	18	82	0	56	17	26	34	21	1.95
25925061--25925236	96	1.8	96	84	4	239	34	19	13	32	1.90
25930116--25930307	30	6.4	30	75	13	157	38	13	27	21	1.90
25930175--25930369	60	3.3	59	71	9	169	36	11	26	24	1.90
25930146--25930337	90	2.1	90	84	3	244	37	13	27	21	1.91
25930288--25930367	30	2.7	30	78	0	88	41	10	21	27	1.85
25934437--25934483	23	2.0	24	87	4	69	42	17	6	34	1.74
25934468--25934521	17	3.2	17	89	0	81	37	20	7	35	1.81
25936711--25936778	33	2.0	34	97	2	129	55	2	2	38	1.30
25942031--25942675	319	2.0	322	94	1	1143	35	14	15	33	1.88
25943511--25943555	21	2.1	21	100	0	90	44	0	0	55	0.99
25944057--25944159	48	2.1	48	98	0	197	29	19	13	37	1.90
25944838--25944868	2	15.5	2	100	0	62	0	48	0	51	1.00
25946092--25946124	2	16.5	2	100	0	66	0	48	0	51	1.00
25952760--25952833	27	2.7	27	86	13	107	44	4	17	33	1.68
25952814--25952905	33	2.8	32	85	9	116	40	0	17	42	1.49
25952989--25953379	126	3.1	125	83	5	470	38	14	17	30	1.89
25956848--25956877	13	2.3	13	94	0	51	43	43	0	13	1.43
25956855--25956972	61	2.0	60	88	5	175	47	29	2	20	1.63
25956900--25956944	23	2.0	23	100	0	90	40	33	4	22	1.74
25957133--25957172	9	4.4	9	90	0	62	27	10	25	37	1.88
25957651--25957685	18	1.9	18	88	0	52	42	5	25	25	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25965460--25965516	28	2.0	28	83	6	71	64	3	3	28	1.26
25966406--25966455	17	2.8	17	87	6	73	40	44	0	16	1.47
25966437--25966514	38	2.0	39	92	2	131	51	26	2	19	1.60
25966642--25966716	37	2.0	37	92	0	105	37	4	13	45	1.62
25966715--25966772	18	3.2	19	83	9	77	27	8	20	43	1.81
25966723--25966772	9	5.6	9	87	0	73	26	8	20	46	1.78
25968775--25968821	12	4.0	12	77	2	51	72	14	4	8	1.24
25970827--25970870	11	3.9	11	90	3	70	45	0	31	22	1.53
25970827--25970870	22	2.0	23	95	4	81	45	0	31	22	1.53
25973003--25973059	27	2.1	27	93	0	96	42	10	10	36	1.74
25973846--25973877	12	2.7	12	95	0	55	0	43	0	56	0.99
25973981--25974034	19	2.7	21	80	11	60	50	12	1	35	1.52
25973999--25974302	146	2.1	148	83	6	386	46	10	4	39	1.59
25974199--25974242	20	2.2	20	87	0	61	47	9	2	40	1.48
25974725--25974756	3	10.7	3	100	0	64	68	0	0	31	0.90
25975690--25975714	13	1.9	13	100	0	50	60	0	0	40	0.97
25980053--25980249	95	2.1	96	99	0	387	55	9	3	32	1.47
25981444--25981499	21	2.6	21	83	8	60	12	32	17	37	1.88
25981453--25981499	21	2.1	23	88	7	71	10	34	17	38	1.84
25981462--25981514	21	2.5	21	81	0	61	13	35	24	26	1.92
25981567--25981616	3	16.7	3	87	0	73	60	0	38	2	1.09
25981581--25981626	21	2.2	20	88	3	65	56	0	43	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25982368--25982404	4	10.0	4	88	11	53	75	0	24	0	0.80
25982366--25982419	19	2.5	20	80	17	56	70	0	29	0	0.88
25982351--25982407	12	4.4	13	82	12	64	66	0	33	0	0.92
25989059--25989406	115	3.0	115	92	0	597	36	28	8	26	1.85
25997616--25998204	294	2.0	295	99	0	1171	41	16	8	32	1.80
26005901--26005963	29	2.2	28	91	2	108	25	25	28	20	1.99
26011881--26012113	41	5.7	41	82	4	292	21	27	16	34	1.95
26011891--26012113	81	2.7	82	84	6	292	21	27	16	34	1.95
26011878--26012113	122	1.9	123	87	2	350	21	27	16	34	1.95
26012556--26012826	41	6.6	41	82	5	334	21	27	16	34	1.95
26012555--26012826	82	3.3	82	84	4	370	20	27	16	34	1.95
26011436--26012786	675	2.0	675	100	0	2702	32	18	15	33	1.92
26012553--26012823	122	2.2	123	86	3	368	21	28	16	33	1.95
26016747--26016841	25	3.7	26	83	5	113	30	21	23	25	1.99
26033272--26033394	62	2.0	61	81	6	142	21	23	29	25	1.99
26037191--26037350	42	3.7	42	78	12	164	32	27	15	24	1.95
26037178--26037350	43	4.0	43	78	11	158	32	27	15	24	1.95
26037176--26037344	86	2.0	84	83	8	216	32	27	15	24	1.96
26048646--26048680	15	2.3	15	95	0	61	37	17	20	25	1.94
26056346--26056383	20	1.9	20	89	10	60	52	13	5	28	1.61
26057450--26057585	73	1.9	73	85	3	193	45	4	6	43	1.50
26058317--26058349	16	1.9	18	88	11	52	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26058643--26058713	30	2.3	31	78	2	81	45	0	19	35	1.51
26058932--26058996	24	2.7	25	76	23	68	29	0	6	64	1.17
26063245--26063397	26	5.8	26	81	9	150	38	16	22	22	1.93
26063334--26063599	81	3.3	81	82	4	290	33	19	22	24	1.97
26063356--26063599	54	4.6	54	84	3	289	31	20	22	25	1.98
26063247--26063595	27	13.1	27	80	8	195	34	18	22	24	1.96
26063553--26063614	25	2.4	25	97	2	115	30	17	29	22	1.97
26063694--26063847	64	2.4	64	93	0	254	17	22	23	36	1.95
26063683--26063844	32	5.1	32	77	3	173	17	22	24	35	1.95
26063926--26063978	26	2.0	26	85	0	70	18	26	20	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145