genome.fa.s13.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  43  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15263128--15263164	18	2.1	18	100	0	74	40	16	16	27	1.89
15265531--15265577	18	2.6	17	80	9	58	74	10	6	8	1.22
15268367--15268492	38	3.2	38	71	20	132	47	6	9	36	1.62
15268344--15268504	80	2.0	80	98	0	313	45	8	9	36	1.67
15268842--15268894	27	2.0	27	84	0	70	35	0	5	58	1.22
15280392--15280580	93	2.0	94	98	1	371	44	5	12	37	1.65
15280539--15280585	23	2.0	23	87	8	67	57	0	2	40	1.11
15283911--15284157	50	4.9	50	75	4	246	26	17	26	30	1.97
15283911--15284155	51	4.9	50	76	6	226	26	17	26	30	1.97
15283911--15284187	101	2.7	103	80	6	307	27	15	25	30	1.96
15286339--15286378	21	1.9	21	85	10	55	37	2	22	37	1.68
15292880--15292936	28	2.1	28	96	3	107	36	10	15	36	1.82
15292965--15293016	6	8.7	6	97	0	86	63	0	19	17	1.31
15318349--15318387	21	2.0	21	85	10	55	35	20	15	28	1.93
15324543--15324594	26	2.0	26	96	0	95	40	17	11	30	1.85
15340063--15340111	25	2.0	25	87	0	71	32	46	6	14	1.69
15342677--15342819	52	2.8	52	93	1	243	46	9	10	34	1.70
15344470--15344495	8	3.2	8	100	0	52	11	38	0	50	1.39
15345956--15346002	14	3.1	14	75	24	51	53	2	0	44	1.12
15347232--15347647	40	10.4	40	84	2	498	15	29	18	36	1.92
15347288--15347508	20	11.1	20	64	15	73	14	31	17	36	1.90
15347616--15347671	20	2.8	20	74	12	62	10	33	25	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15363813--15364103	149	2.0	149	100	0	582	45	10	10	33	1.73
15365390--15365442	23	2.4	22	84	9	63	41	0	1	56	1.10
15366716--15366753	16	2.4	16	95	0	67	36	2	34	26	1.71
15366735--15366827	44	2.1	44	84	6	116	33	5	25	35	1.79
15367035--15367074	20	2.0	21	85	5	55	60	5	0	35	1.19
15367871--15367929	30	2.0	30	96	0	109	45	15	20	18	1.85
15373038--15373174	50	2.7	49	81	8	152	26	21	27	24	1.99
15378483--15378563	37	2.2	37	88	0	117	39	27	13	19	1.89
15392402--15392620	48	4.8	42	82	8	150	30	26	16	27	1.97
15392449--15392633	48	3.9	48	88	1	248	29	24	17	27	1.98
15392450--15392633	95	1.9	95	87	2	271	29	24	17	27	1.98
15392628--15392722	30	3.1	30	77	7	100	47	14	6	31	1.69
15399917--15399955	20	2.0	20	94	0	69	15	25	35	23	1.94
15406544--15406583	18	2.2	18	86	0	53	17	17	0	65	1.28
15409931--15410019	19	4.7	19	72	0	70	35	26	15	21	1.94
15417275--15417829	278	2.0	279	99	0	1103	36	12	18	32	1.88
15420599--15420650	20	2.6	20	84	0	59	38	5	17	38	1.74
15432689--15432727	16	2.5	16	87	4	53	33	28	2	35	1.71
15453017--15453256	45	5.4	45	84	1	284	38	16	19	25	1.92
15452985--15453175	90	2.1	89	83	0	229	38	14	21	24	1.91
15453022--15453256	89	2.6	90	84	1	283	38	16	19	25	1.92
15453022--15453278	134	1.9	134	83	1	327	38	17	19	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15453202--15453322	45	2.7	45	78	5	120	41	19	17	21	1.90
15464506--15464600	50	1.9	50	93	0	163	29	7	21	42	1.80
15465687--15465725	19	2.1	19	90	0	60	20	28	33	17	1.96
15479160--15479218	26	2.3	26	85	5	75	44	6	10	38	1.65
15489205--15489229	13	1.9	13	100	0	50	28	0	0	72	0.86
15489855--15489921	32	2.1	32	83	10	84	7	17	2	71	1.22
15490031--15490070	21	2.0	21	85	9	57	5	30	0	65	1.14
15494044--15494080	2	18.5	2	100	0	74	0	51	0	48	1.00
15504025--15504180	25	6.4	24	83	6	181	24	23	19	32	1.97
15504025--15504180	49	3.2	48	84	6	181	24	23	19	32	1.97
15504025--15504180	73	2.1	74	86	3	217	24	23	19	32	1.97
15504045--15504196	49	3.1	49	85	6	166	25	24	19	30	1.98
15504837--15504880	20	2.2	20	84	8	54	63	6	13	15	1.49
15506386--15506424	20	1.9	21	89	5	62	30	15	2	51	1.57
15507401--15507442	20	2.0	21	90	4	68	30	42	11	14	1.81
15509958--15510098	40	3.5	39	85	6	194	36	23	21	19	1.95
15510136--15510329	41	4.7	41	86	6	234	22	22	25	29	1.99
15510730--15510755	7	3.7	7	100	0	52	15	0	53	30	1.42
15510851--15510888	13	2.8	13	81	18	51	13	0	47	39	1.42
15510799--15510942	74	1.9	76	85	2	202	28	1	26	43	1.63
15510930--15510954	7	3.6	7	100	0	50	16	0	52	32	1.44
15510731--15511244	199	2.6	199	99	0	1021	29	2	27	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15511050--15511087	13	2.8	13	81	18	51	13	0	47	39	1.42
15510998--15511141	74	1.9	76	85	2	202	28	1	26	43	1.63
15511129--15511153	7	3.6	7	100	0	50	16	0	52	32	1.44
15515360--15515448	41	2.2	41	87	0	124	29	29	24	16	1.97
15515387--15515517	69	1.9	68	93	1	226	27	29	25	16	1.97
15515459--15515580	41	3.0	41	96	1	217	30	33	18	17	1.94
15515357--15515554	110	1.8	109	89	1	315	28	29	22	19	1.98
15515644--15515735	38	2.3	41	83	7	111	19	23	25	31	1.98
15518606--15518642	14	2.6	15	83	12	51	10	8	0	81	0.89
15521174--15521272	11	9.2	11	68	16	55	66	7	4	22	1.33
15533423--15533457	18	2.0	17	88	5	52	54	0	0	45	0.99
15536409--15536443	6	5.8	6	96	0	61	34	0	65	0	0.93
15543262--15543337	37	2.1	36	85	2	98	57	2	6	32	1.38
15544556--15544735	38	4.7	38	89	0	252	32	22	13	31	1.93
15544610--15544671	19	3.3	18	68	18	54	35	22	12	29	1.91
15548821--15548879	28	2.1	28	87	3	82	67	3	1	27	1.16
15549723--15549756	6	5.7	6	100	0	68	50	35	0	14	1.44
15554206--15554230	4	6.2	4	100	0	50	48	0	0	52	1.00
15557061--15557098	14	2.7	14	100	0	76	13	5	50	31	1.63
15560116--15560245	19	6.8	19	91	0	215	37	10	15	36	1.82
15582651--15582769	63	1.9	63	94	3	213	33	25	12	28	1.92
15582791--15582834	21	2.1	21	82	0	52	29	27	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15582899--15582950	23	2.4	21	78	12	59	32	30	9	26	1.89
15582913--15582956	23	1.9	23	95	0	79	31	27	9	31	1.88
15587171--15587227	30	1.9	30	85	7	80	35	21	14	29	1.92
15588935--15589035	19	5.0	22	84	7	67	38	17	6	36	1.77
15588958--15589049	19	4.8	19	89	0	139	36	17	8	36	1.81
15588935--15589049	38	2.9	38	88	5	158	38	17	7	36	1.79
15589560--15590498	44	21.6	45	69	13	382	27	22	20	30	1.98
15589553--15590515	218	4.4	216	86	3	1204	27	22	19	30	1.98
15589553--15590498	435	2.2	433	90	1	1464	27	22	19	30	1.98
15590864--15590985	44	2.8	44	87	5	158	28	27	18	25	1.98
15591002--15591562	88	6.4	88	89	0	845	21	23	26	28	1.99
15591067--15591293	44	5.2	44	62	10	113	20	22	29	28	1.98
15592570--15593135	88	6.5	88	92	1	886	19	24	27	28	1.99
15592570--15592877	44	7.0	45	64	9	177	19	22	28	29	1.98
15593173--15593315	45	3.2	45	76	4	155	19	25	25	30	1.98
15593190--15593325	44	3.1	44	72	4	148	22	25	25	26	2.00
15593000--15593286	150	1.9	150	91	1	468	20	25	28	26	1.99
15593138--15593271	44	3.1	43	73	4	142	20	24	26	28	1.99
15593138--15593382	88	2.8	88	90	1	366	21	24	26	27	1.99
15593192--15593329	45	3.1	45	70	8	138	22	24	26	26	2.00
15594707--15594739	14	2.3	15	89	5	50	27	33	12	27	1.92
15595524--15595584	26	2.3	26	83	5	70	57	4	14	22	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15595842--15597481	830	2.0	809	97	2	3091	24	21	17	35	1.94
15600728--15601014	87	3.3	86	79	9	296	34	11	11	41	1.78
15600728--15601122	174	2.3	169	78	9	368	34	11	11	43	1.77
15601005--15601193	85	2.2	85	79	5	206	31	12	12	43	1.79
15609400--15609512	30	3.8	30	89	0	172	33	45	0	21	1.52
15611687--15611839	78	2.0	78	84	0	198	30	22	15	32	1.95
15625456--15625619	85	1.9	85	85	4	224	26	12	20	40	1.87
15627460--15627490	16	1.9	16	100	0	62	32	0	38	29	1.57
15631014--15631046	17	2.0	17	88	5	50	69	0	27	3	1.03
15633011--15633051	21	2.0	22	90	9	68	48	9	9	31	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145