genome.fa.s13.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  56  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19480816--19481088	136	2.0	137	99	0	539	44	10	9	35	1.72
19482615--19482639	3	8.3	3	100	0	50	68	0	0	32	0.90
19495069--19495118	26	1.9	26	84	8	66	56	14	8	22	1.64
19495117--19495287	85	2.0	86	98	1	335	46	9	16	27	1.77
19501479--19501518	21	1.9	21	100	0	80	37	0	12	50	1.41
19501748--19501789	6	6.8	6	83	5	57	19	0	2	78	0.86
19501749--19501789	19	2.2	19	90	0	64	17	0	2	80	0.82
19528558--19528621	25	2.6	26	83	11	73	37	1	4	56	1.30
19528558--19528601	13	3.8	12	82	11	56	38	0	2	59	1.10
19531000--19531050	26	2.0	26	88	0	75	27	11	17	43	1.84
19542656--19542727	29	2.4	31	75	13	78	48	0	1	50	1.09
19542917--19543134	108	2.0	110	98	1	422	44	8	5	41	1.57
19548194--19548250	15	3.7	15	75	9	60	12	3	10	73	1.21
19548191--19548252	32	1.9	32	100	0	124	11	3	9	75	1.14
19548200--19548251	16	3.2	16	73	10	61	11	3	9	75	1.18
19548191--19548261	32	2.4	29	84	13	76	12	2	8	76	1.12
19552338--19552549	94	2.3	94	87	1	291	30	21	22	26	1.99
19552486--19552843	143	2.5	143	87	2	506	29	20	22	27	1.99
19553127--19553169	20	2.2	20	88	8	63	62	20	2	13	1.42
19553316--19553349	16	2.1	17	88	5	52	61	8	17	11	1.54
19555593--19555632	21	1.9	21	94	0	71	30	17	27	25	1.97
19559145--19559170	13	2.0	13	100	0	52	7	0	7	84	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19559889--19559964	27	2.7	28	80	15	77	34	7	2	55	1.43
19560010--19560073	29	2.2	28	86	5	92	32	4	1	60	1.26
19560026--19560089	29	2.2	29	86	5	85	34	1	1	62	1.14
19560026--19560090	28	2.3	29	77	15	73	35	1	1	61	1.15
19563958--19563989	15	2.0	17	88	11	50	43	12	6	37	1.68
19565433--19565503	25	2.8	24	77	10	79	40	11	15	32	1.83
19566928--19566957	8	3.8	8	100	0	60	60	40	0	0	0.97
19568133--19568161	11	2.5	12	94	5	51	37	0	3	58	1.15
19568821--19568894	8	9.4	8	84	12	84	78	9	0	12	0.97
19568819--19568861	10	4.6	10	88	11	65	81	9	0	9	0.88
19568820--19568894	18	4.2	18	76	20	77	78	9	0	12	0.96
19568817--19568894	28	2.9	28	79	16	101	79	8	0	11	0.93
19568849--19568903	7	7.9	7	78	13	60	74	9	1	14	1.14
19568849--19568904	21	2.6	22	86	5	71	75	8	1	14	1.13
19568822--19568894	27	2.6	28	77	12	80	78	9	0	12	0.98
19568907--19568948	6	7.3	6	89	5	61	83	0	16	0	0.65
19569110--19569163	23	2.3	23	100	0	108	33	18	18	29	1.95
19569816--19569848	8	4.1	8	85	14	50	75	0	12	12	1.04
19569816--19569861	16	3.0	15	84	12	58	73	0	13	13	1.09
19570991--19571594	46	13.1	46	88	2	872	25	15	28	29	1.96
19571647--19571934	126	2.2	125	81	8	321	31	18	22	26	1.97
19573099--19573127	11	2.5	12	94	5	51	37	0	3	58	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19575610--19575649	20	2.0	21	85	9	57	45	12	5	37	1.64
19575943--19576004	31	2.0	32	81	9	74	46	6	11	35	1.65
19579178--19579744	126	4.5	125	84	4	689	30	17	23	29	1.97
19582891--19583365	22	22.0	22	84	4	506	24	0	29	45	1.56
19582891--19583359	43	10.8	43	84	6	574	24	0	29	45	1.55
19582891--19583365	65	7.3	63	85	5	576	24	0	29	45	1.56
19583327--19583393	27	2.4	27	82	7	71	23	0	31	44	1.54
19583652--19583698	21	2.2	21	85	7	60	10	21	31	36	1.88
19584786--19584823	20	1.9	20	84	10	51	55	7	2	34	1.43
19585808--19585884	11	6.9	11	73	24	72	45	1	27	25	1.61
19585808--19585884	33	2.3	33	82	10	102	45	1	27	25	1.61
19593897--19593956	3	20.0	3	100	0	120	66	0	0	33	0.92
19597617--19597667	26	2.0	26	84	0	66	54	11	5	27	1.59
19598837--19598866	15	2.0	15	93	0	51	26	0	3	70	1.03
19599617--19599667	15	3.4	15	72	5	50	52	0	1	45	1.12
19601210--19601245	15	2.5	14	86	8	54	44	8	0	47	1.33
19605138--19605220	33	2.4	33	82	9	96	39	12	10	37	1.78
19608671--19608859	19	9.7	19	80	6	200	41	11	12	34	1.79
19608671--19608859	59	3.2	58	81	11	233	41	11	12	34	1.79
19608678--19608856	78	2.3	78	95	3	333	41	11	11	34	1.78
19618874--19618914	19	2.2	19	90	0	64	41	7	14	36	1.74
19621671--19621724	3	18.0	3	100	0	108	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19622157--19622194	18	2.0	20	90	10	62	50	2	0	47	1.15
19622866--19622909	23	1.9	23	85	0	61	38	4	15	40	1.68
19630423--19630468	16	2.9	16	84	12	60	39	15	6	39	1.73
19631007--19631066	28	2.2	27	81	3	66	46	0	5	48	1.24
19631039--19631108	32	2.2	32	82	12	83	47	0	4	48	1.21
19631406--19631442	14	2.7	13	88	12	56	81	0	16	2	0.81
19632366--19632531	43	3.9	43	91	0	269	27	27	20	25	1.99
19632366--19632543	86	2.1	86	93	0	302	28	28	20	23	1.99
19639466--19639516	26	2.0	26	92	0	84	23	7	5	62	1.44
19639563--19639605	19	2.3	19	80	11	52	65	4	4	25	1.32
19639610--19639767	41	3.9	41	93	0	253	28	25	21	24	1.99
19639807--19639898	40	2.3	39	83	7	112	18	19	26	35	1.95
19643609--19643730	40	3.1	40	80	9	142	33	22	21	22	1.97
19643781--19644096	41	7.7	41	87	1	418	24	22	24	28	1.99
19644320--19644352	14	2.3	15	94	5	59	30	0	33	36	1.58
19644498--19644564	7	9.6	7	72	6	55	16	1	50	31	1.54
19644496--19644562	21	3.1	21	70	10	64	14	1	50	32	1.52
19648086--19648163	39	2.0	39	85	5	104	39	15	20	24	1.91
19648198--19648564	41	9.0	41	85	1	493	19	21	27	31	1.97
19648941--19648988	7	6.7	7	76	4	51	20	0	45	33	1.52
19648955--19648999	22	2.0	22	86	0	63	26	2	37	33	1.69
19649311--19649356	19	2.5	19	89	3	67	78	2	2	17	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19653115--19653472	43	8.4	43	83	5	404	22	17	30	28	1.97
19653155--19653468	128	2.4	128	84	4	409	23	18	30	27	1.98
19654563--19654622	18	3.4	18	64	13	52	43	6	10	40	1.64
19663523--19663588	32	2.1	32	97	0	123	27	13	21	37	1.91
19664337--19664416	30	2.8	28	83	7	97	37	18	5	38	1.73
19664333--19664428	29	3.3	30	82	4	115	41	16	5	36	1.71
19664333--19664448	29	3.9	30	76	8	78	37	17	6	37	1.76
19664727--19664786	17	3.5	17	76	0	57	33	16	41	8	1.78
19664798--19664872	10	7.8	10	81	10	70	73	0	24	2	0.96
19664800--19664852	24	2.3	23	84	12	72	69	0	28	1	0.99
19664794--19664853	21	3.0	21	83	9	72	68	0	30	1	0.99
19664798--19664847	14	3.1	17	72	19	52	68	0	30	2	1.01
19665075--19665128	28	1.9	28	84	0	72	25	33	27	12	1.93
19674192--19675321	78	14.6	77	85	6	1259	28	17	20	33	1.95
19674186--19675358	156	7.6	154	84	5	1421	27	17	20	34	1.95
19675486--19675639	29	5.2	30	80	6	172	37	20	3	38	1.69
19675486--19675639	59	2.6	59	83	5	195	37	20	3	38	1.69
19675996--19676033	19	2.0	19	89	0	58	68	0	31	0	0.90
19676274--19676327	28	1.9	28	92	0	90	29	40	24	5	1.77
19681233--19681329	41	2.4	41	92	0	158	31	20	19	27	1.97
19681233--19681344	41	2.7	41	87	2	127	33	21	19	25	1.97
19681487--19681648	65	2.4	65	81	10	175	40	15	9	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19681530--19681661	71	1.9	69	84	6	176	42	14	8	34	1.76
19688584--19688656	6	11.8	6	71	18	53	75	1	20	2	1.00
19688587--19688654	20	3.7	18	72	12	57	73	1	22	2	1.05
19689638--19689908	138	2.0	138	88	4	413	46	12	23	17	1.83
19691656--19691708	3	17.7	3	100	0	106	67	0	32	0	0.91
19701602--19701636	15	2.3	15	90	0	52	37	34	5	22	1.78
19709386--19709532	75	2.0	75	93	0	249	35	19	19	25	1.95
19710851--19710878	14	2.0	14	100	0	56	21	7	0	71	1.09
19713010--19713069	27	2.2	27	96	0	111	20	23	23	33	1.97
19718235--19718294	30	2.0	31	83	9	79	41	0	36	21	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145