genome.fa.s13.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  94  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32224312--32224355	22	2.0	21	86	4	61	50	11	0	38	1.39
32226218--32226245	2	14.0	2	100	0	56	50	0	0	50	1.00
32226449--32226673	43	5.3	43	86	0	308	27	31	16	24	1.96
32228028--32228062	16	2.2	16	100	0	70	51	5	0	42	1.25
32232711--32232794	14	5.9	14	67	10	55	36	40	0	22	1.54
32233093--32233142	15	3.5	15	86	13	61	46	36	0	18	1.49
32233091--32233238	7	20.7	7	72	12	68	45	33	0	20	1.57
32233121--32233159	15	2.7	15	88	4	53	46	28	0	25	1.53
32233527--32233758	41	5.6	40	91	5	356	30	31	20	17	1.96
32233830--32233923	40	2.3	40	92	0	152	21	25	20	32	1.97
32233930--32233957	12	2.3	12	100	0	56	46	32	14	7	1.71
32243346--32243371	13	2.0	13	100	0	52	53	0	0	46	1.00
32248968--32249194	79	2.9	79	85	0	301	44	18	9	27	1.81
32250555--32250626	29	2.5	29	88	2	101	55	0	30	13	1.39
32251240--32251280	14	2.9	14	85	0	55	41	2	14	41	1.59
32251870--32251911	16	2.6	16	96	0	75	57	16	9	16	1.65
32252705--32252742	4	9.5	4	94	0	67	21	0	52	26	1.47
32263823--32263996	89	2.0	88	82	5	217	37	18	8	35	1.82
32264001--32264044	22	2.0	21	82	4	52	63	0	0	36	0.95
32264157--32264229	21	3.7	20	70	17	53	56	5	8	30	1.51
32264625--32264671	19	2.5	19	75	6	51	59	0	2	38	1.09
32264583--32264686	28	3.7	27	75	13	93	58	2	5	32	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32264657--32264731	21	3.7	21	77	13	61	61	4	6	28	1.39
32264569--32264707	56	2.4	57	80	9	149	59	3	5	30	1.38
32264857--32264961	9	11.6	9	70	9	61	33	1	1	62	1.17
32264857--32264918	28	2.2	28	88	5	90	35	3	3	58	1.31
32264865--32264926	28	2.2	28	82	5	72	38	3	1	56	1.25
32264911--32264973	9	6.9	9	77	10	56	30	1	0	68	0.99
32264910--32264962	17	3.1	17	77	2	61	30	0	0	69	0.88
32264929--32265006	10	7.3	11	76	13	58	24	3	1	70	1.11
32265024--32265192	89	1.9	89	82	2	214	34	10	20	34	1.86
32267812--32267861	24	2.0	25	84	3	66	14	26	20	40	1.90
32269277--32269308	16	2.0	16	100	0	64	12	12	12	62	1.55
32272654--32272725	29	2.5	29	90	0	108	36	9	29	25	1.88
32272705--32272781	30	2.6	29	81	4	91	41	9	24	24	1.84
32272705--32272796	29	3.1	29	79	3	103	38	13	25	23	1.91
32278332--32278632	44	6.6	44	66	20	134	35	19	17	26	1.94
32278374--32278796	94	4.5	95	78	5	401	36	18	18	26	1.94
32278373--32278796	188	2.3	188	78	3	449	36	18	18	26	1.94
32280390--32280451	21	3.0	21	78	0	79	14	22	17	45	1.85
32288493--32289109	115	5.4	114	77	5	503	25	22	19	31	1.98
32288499--32289034	229	2.3	228	82	2	646	25	22	19	32	1.97
32288493--32289110	229	2.7	227	77	9	644	25	22	19	31	1.98
32289726--32289763	19	2.0	19	94	0	67	36	13	5	44	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32292443--32292520	38	2.0	39	92	2	131	6	23	3	66	1.31
32296958--32297760	400	2.0	401	97	0	1518	24	16	24	34	1.95
32307271--32307671	132	3.0	132	94	0	694	23	24	20	30	1.99
32307345--32307673	44	7.5	44	65	16	144	23	23	21	31	1.98
32312846--32312896	16	3.1	17	78	15	63	3	31	3	60	1.33
32324286--32324375	23	4.0	22	76	13	85	18	6	22	52	1.69
32325280--32325332	23	2.3	23	76	0	61	67	3	0	28	1.07
32332915--32332949	18	2.0	17	88	5	52	45	0	0	54	0.99
32335454--32335769	89	3.5	88	79	8	302	24	5	12	56	1.58
32335454--32335769	88	3.6	86	78	10	316	24	5	12	56	1.58
32337977--32338039	23	2.7	23	86	11	85	65	0	11	23	1.25
32337995--32338173	22	9.1	18	67	28	57	63	0	11	24	1.31
32338044--32338081	15	2.5	15	87	12	51	71	0	10	18	1.14
32338020--32338103	35	2.4	36	84	9	111	65	1	10	22	1.31
32338028--32338083	17	3.2	17	74	25	55	66	1	12	19	1.33
32338106--32338163	17	3.5	17	73	4	55	60	0	13	25	1.34
32338109--32338164	22	2.5	23	88	2	78	58	0	14	26	1.36
32338714--32338764	5	9.6	5	85	12	66	21	17	0	60	1.36
32338704--32338987	17	15.4	17	65	18	97	22	13	1	62	1.38
32338713--32338759	23	2.1	21	92	7	76	19	19	0	61	1.34
32338734--32338856	52	2.4	52	79	15	139	22	12	0	64	1.32
32338754--32338845	35	2.6	34	79	12	98	22	9	1	66	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32338839--32338908	11	6.8	11	71	19	53	25	18	2	52	1.59
32338823--32338925	28	3.7	28	75	6	86	24	16	1	57	1.50
32338878--32338925	22	2.2	22	88	0	69	27	16	0	56	1.41
32338838--32338908	5	13.0	5	72	16	52	25	18	2	53	1.58
32338903--32338989	18	4.7	18	78	12	59	22	10	1	65	1.30
32338972--32339025	25	2.2	25	86	3	74	35	7	0	57	1.27
32339239--32339296	27	2.1	27	81	6	64	22	12	5	60	1.51
32340614--32340638	11	2.3	11	100	0	50	8	8	8	76	1.18
32340795--32340820	12	2.2	12	100	0	52	76	15	7	0	0.99
32345539--32345576	15	2.6	15	87	4	51	50	0	18	31	1.47
32346070--32346167	31	3.2	31	80	0	106	33	13	13	39	1.83
32350851--32350885	1	35.0	1	100	0	70	100	0	0	0	0.00
32353663--32353700	11	3.3	12	89	10	62	44	0	0	55	0.99
32358861--32358890	2	15.0	2	100	0	60	50	0	0	50	1.00
32363673--32363744	27	2.7	27	78	8	83	43	19	15	22	1.88
32363782--32363831	20	2.5	20	80	0	64	34	24	26	16	1.95
32366952--32366976	7	3.6	7	100	0	50	40	48	0	12	1.40
32374942--32375040	39	2.5	39	83	0	117	43	18	4	34	1.69
32379644--32379694	22	2.3	22	83	6	59	62	0	5	31	1.19
32382657--32382708	27	1.9	27	84	0	68	55	9	3	30	1.50
32384918--32384991	31	2.3	34	81	6	91	63	9	21	5	1.44
32385905--32386132	118	1.9	118	88	3	343	37	8	24	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32386907--32386969	25	2.4	26	77	17	69	31	11	23	33	1.90
32388909--32389120	106	2.0	106	98	0	406	31	14	14	39	1.86
32394447--32394498	23	2.3	23	89	0	77	21	19	19	40	1.92
32394459--32394518	23	2.6	23	78	0	57	26	21	15	36	1.93
32397280--32397397	51	2.3	51	83	2	139	29	22	20	27	1.98
32398070--32398102	4	8.8	4	87	12	52	21	0	0	78	0.75
32398070--32398098	14	2.1	14	100	0	58	20	0	0	79	0.74
32398856--32398915	30	2.0	30	83	3	75	41	0	38	20	1.52
32399130--32399166	9	4.1	9	92	0	65	29	10	13	45	1.77
32399219--32399249	9	3.4	9	90	0	53	38	22	12	25	1.90
32404079--32404114	13	2.8	13	87	4	56	11	2	47	38	1.54
32406188--32406221	17	2.0	17	94	0	59	41	20	5	32	1.76
32411164--32411207	3	14.7	3	100	0	88	31	0	0	68	0.90
32411360--32411389	15	1.9	16	93	6	53	36	0	0	63	0.95
32413447--32413511	26	2.5	26	80	2	78	29	23	20	27	1.98
32428146--32428444	44	6.8	43	72	12	223	30	20	25	23	1.99
32428031--32428623	132	4.5	131	89	4	787	31	19	24	24	1.98
32428095--32428456	88	4.1	88	70	8	241	30	19	25	24	1.98
32431128--32431153	12	2.2	12	100	0	52	23	7	30	38	1.83
32432859--32432884	7	3.7	7	100	0	52	0	61	0	38	0.96
32435443--32435484	16	2.6	16	82	10	50	47	2	14	35	1.57
32439328--32439387	26	2.3	26	85	0	75	45	6	11	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32441251--32441291	19	2.1	20	90	4	66	41	14	14	29	1.86
32441354--32441445	47	2.0	47	82	0	112	44	15	11	28	1.81
32443026--32443643	309	2.0	309	95	0	1119	38	17	14	28	1.90
32449399--32449432	12	2.8	12	90	4	50	26	8	20	44	1.81
32455496--32455552	19	2.9	19	79	7	62	59	1	1	36	1.18
32461462--32461736	135	2.0	136	97	1	527	28	10	14	46	1.77
32471026--32471052	9	3.0	9	100	0	54	66	0	0	33	0.92
32471023--32471114	31	3.0	31	84	7	116	58	0	3	38	1.14
32471023--32471106	30	2.8	30	89	5	116	57	0	3	39	1.16
32471023--32471074	11	4.9	11	81	13	65	57	0	1	40	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145