genome.fa.s13.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  96  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32743514--32743573	28	2.2	27	84	3	75	53	8	5	33	1.53
32745248--32745290	22	1.9	22	85	4	59	53	4	0	41	1.21
32745631--32745667	16	2.3	16	95	0	65	24	32	5	37	1.78
32762311--32762342	14	2.3	14	94	0	55	43	3	0	53	1.16
32765600--32765659	9	6.3	9	74	11	57	63	1	1	33	1.14
32765614--32765653	21	2.0	20	90	5	62	67	2	2	27	1.16
32765749--32765780	16	1.9	17	93	6	57	37	0	6	56	1.25
32767448--32767516	29	2.4	29	82	0	75	43	5	10	40	1.62
32774696--32774816	63	1.9	63	86	0	170	51	7	7	33	1.58
32775061--32775091	4	7.5	4	92	7	53	48	0	0	51	1.00
32777641--32777680	17	2.3	17	87	12	55	50	15	0	35	1.44
32778668--32778697	15	2.1	14	93	6	51	66	0	26	6	1.16
32779643--32779686	20	2.2	20	84	8	54	52	0	6	40	1.28
32780052--32780101	21	2.3	21	89	3	73	34	8	4	54	1.49
32781084--32781125	19	2.2	20	83	12	52	42	2	0	54	1.13
32781319--32781344	5	5.2	5	100	0	52	42	19	19	19	1.90
32781855--32781914	30	2.0	30	83	3	75	41	0	38	20	1.52
32782128--32782164	9	4.1	9	85	0	56	32	10	10	45	1.74
32787080--32787241	80	2.0	81	98	1	317	34	9	3	51	1.53
32789117--32789180	24	2.6	25	69	16	62	6	17	3	73	1.17
32792016--32792074	30	2.0	30	93	0	100	61	6	5	27	1.43
32800839--32800903	31	2.2	30	88	5	96	35	4	10	49	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32805416--32805493	29	2.7	29	73	13	72	14	23	0	62	1.31
32805464--32805533	21	3.3	21	72	9	61	18	20	0	61	1.35
32811131--32811189	9	6.4	9	72	3	55	45	25	6	22	1.76
32811554--32811613	31	1.9	31	100	0	120	50	3	23	23	1.64
32812184--32812226	22	2.0	22	85	0	59	72	0	20	6	1.08
32816158--32816336	42	4.3	42	82	8	188	28	15	25	31	1.95
32816158--32816336	84	2.1	84	83	6	220	28	15	25	31	1.95
32818662--32818788	43	3.0	43	100	0	254	47	11	18	22	1.81
32818813--32818837	13	1.9	13	100	0	50	40	16	0	44	1.47
32823748--32823786	18	2.2	17	86	13	53	33	0	20	46	1.51
32836939--32836978	20	2.0	20	85	9	55	30	0	2	67	1.04
32839839--32839878	20	2.0	20	90	0	62	50	10	10	30	1.69
32839827--32839892	34	1.9	34	87	6	98	46	12	7	33	1.69
32840693--32840735	9	4.7	9	82	5	59	23	2	2	72	1.08
32841807--32842071	118	2.2	117	81	7	288	24	16	21	37	1.94
32842738--32843069	90	3.7	90	87	2	452	26	5	14	54	1.60
32846718--32846771	29	1.9	28	88	7	83	50	7	14	27	1.70
32846893--32846939	21	2.2	21	92	0	76	27	8	0	63	1.23
32847111--32847164	25	2.1	26	89	3	83	38	9	0	51	1.34
32847036--32847676	336	1.9	330	84	7	839	24	17	11	46	1.82
32847656--32847699	6	7.8	6	95	5	67	18	27	0	54	1.44
32847686--32847754	25	2.7	27	72	18	76	23	13	1	62	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32848889--32848917	12	2.3	13	94	5	51	48	0	3	48	1.18
32849093--32849161	3	23.0	3	96	0	129	33	1	0	65	1.02
32851780--32851828	21	2.3	21	96	0	89	30	14	24	30	1.94
32853525--32853561	9	4.1	9	92	0	65	45	13	10	29	1.77
32853629--32853721	48	1.9	48	95	0	168	23	51	0	24	1.48
32860545--32860571	11	2.5	11	100	0	54	0	7	0	92	0.38
32861462--32862377	458	2.0	458	100	0	1832	26	19	19	34	1.96
32863699--32863747	24	2.0	24	96	0	89	30	26	10	32	1.89
32868510--32868555	20	2.3	20	80	0	56	28	19	17	34	1.94
32873828--32873852	7	3.6	7	100	0	50	72	0	0	28	0.86
32878382--32878423	17	2.4	17	88	11	59	54	0	0	45	0.99
32880259--32880318	30	2.0	31	83	9	79	38	0	40	21	1.54
32883843--32883867	3	8.3	3	100	0	50	32	36	0	32	1.58
32893570--32893602	15	2.1	17	88	11	52	72	3	0	24	0.98
32910792--32911637	44	19.5	43	74	11	569	27	21	23	27	1.99
32910920--32911637	89	8.3	87	71	13	457	27	21	23	27	1.99
32910782--32911657	217	4.0	217	95	0	1547	27	21	23	27	1.99
32914746--32914822	13	5.9	13	92	0	127	24	10	25	38	1.87
32919825--32919859	10	3.5	10	92	0	52	60	2	2	34	1.26
32926725--32926831	20	5.2	21	72	18	64	35	6	10	47	1.63
32926725--32926831	40	2.6	41	79	8	112	35	6	10	47	1.63
32926758--32926819	20	3.1	20	77	9	72	35	8	9	46	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32929941--32929965	11	2.3	11	100	0	50	32	0	0	68	0.90
32937726--32937786	26	2.3	26	86	5	79	42	4	3	49	1.40
32942304--32942353	19	2.6	19	81	9	66	82	2	16	0	0.77
32943341--32943529	45	4.2	45	88	0	261	24	16	28	30	1.96
32943541--32943810	128	2.1	128	92	1	445	34	23	17	25	1.96
32945797--32945848	26	2.1	24	85	7	68	42	5	1	50	1.37
32945791--32945850	26	2.3	26	79	0	66	43	6	1	48	1.39
32959941--32960042	50	2.0	52	96	3	190	37	19	16	26	1.93
32969920--32969951	16	2.0	16	100	0	64	50	18	0	31	1.48
32971638--32971710	27	2.7	26	72	6	65	34	19	4	42	1.70
32971652--32971762	40	2.8	39	83	8	116	34	16	3	45	1.64
32971856--32971931	13	5.7	13	71	17	57	35	15	1	47	1.54
32971857--32971960	40	2.6	40	83	3	111	36	18	1	43	1.61
32975166--32975266	53	1.9	53	85	0	139	33	11	23	30	1.91
32978174--32978232	23	2.4	25	86	10	79	55	1	0	42	1.09
32982158--32982198	18	2.3	18	91	0	64	24	0	0	75	0.80
32982150--32982210	26	2.3	26	83	13	81	26	0	0	73	0.83
32982158--32982209	18	2.9	18	77	11	54	28	0	0	71	0.87
32982024--32982441	208	2.0	209	99	0	820	36	11	9	42	1.73
32982366--32982406	18	2.3	18	91	0	64	24	0	0	75	0.80
32982358--32982418	26	2.3	26	83	13	81	26	0	0	73	0.83
32982366--32982417	18	2.9	18	77	11	54	28	0	0	71	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32983576--32983616	18	2.3	18	91	0	64	24	0	0	75	0.80
32983568--32983628	26	2.3	26	83	13	81	26	0	0	73	0.83
32983576--32983627	18	2.9	18	77	11	54	28	0	0	71	0.87
32985205--32985237	11	3.0	11	83	16	50	18	0	0	81	0.68
32990832--32990870	11	3.5	11	78	0	51	33	0	10	56	1.33
32994682--32995451	386	2.0	386	94	0	1351	29	15	23	31	1.95
33002683--33002707	13	1.9	13	100	0	50	8	16	0	76	1.02
33008579--33009101	261	2.0	262	98	1	1023	32	24	15	27	1.95
33009871--33009914	23	1.9	23	95	0	79	31	25	29	13	1.94
33021407--33021441	11	3.2	11	92	8	54	82	0	0	17	0.66
33021407--33021442	5	6.8	5	90	9	54	80	0	0	19	0.71
33021407--33021442	16	2.2	16	100	0	72	80	0	0	19	0.71
33024097--33024286	95	2.0	94	83	5	238	35	15	10	38	1.81
33024333--33024450	61	2.0	60	86	5	168	51	4	3	40	1.38
33024437--33024475	20	2.0	20	94	0	69	53	2	0	43	1.14
33024357--33024467	61	1.9	59	81	9	138	51	4	3	40	1.40
33027208--33027281	21	3.5	21	77	3	78	25	6	33	33	1.82
33030008--33030052	17	2.6	17	82	0	54	42	17	8	31	1.80
33032264--33032313	22	2.3	22	92	0	82	66	4	6	24	1.32
33037884--33037935	24	2.1	25	86	10	72	44	1	42	11	1.51
33042962--33043033	25	2.6	27	80	14	85	50	5	22	22	1.70
33042991--33043049	30	1.9	31	86	10	86	49	6	18	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33048014--33048235	43	5.2	43	80	9	184	28	30	19	21	1.98
33048074--33048235	87	1.9	86	82	1	207	27	33	17	21	1.96
33051289--33051321	17	1.9	17	100	0	66	60	12	3	24	1.46
33052738--33052783	20	2.3	20	92	0	74	52	15	4	28	1.61
33054103--33054342	51	4.6	51	88	6	315	22	29	22	26	1.99
33054095--33054345	101	2.4	102	84	6	319	22	29	21	26	1.99
33061785--33061849	23	3.0	22	74	14	64	30	13	21	33	1.92
33069286--33069312	12	2.2	12	100	0	54	18	7	0	74	1.05
33073397--33073480	41	2.0	41	97	0	159	53	20	2	23	1.57
33078061--33078103	22	2.0	21	86	4	59	11	0	37	51	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145