genome.fa.s13.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  140  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46520277--46520311	6	5.8	6	100	0	70	48	0	0	51	1.00
46522864--46523120	128	2.0	128	97	0	487	33	17	15	33	1.91
46525343--46525444	42	2.4	42	93	0	177	25	12	14	47	1.80
46528390--46528447	19	3.3	17	75	20	57	72	1	3	22	1.09
46528390--46528486	33	2.9	34	79	13	96	69	4	3	23	1.21
46528480--46528524	19	2.4	18	82	10	56	44	0	0	55	0.99
46528555--46529007	233	2.0	220	99	0	780	38	8	8	40	1.67
46529121--46529181	28	2.1	29	90	3	97	27	1	1	68	1.08
46529127--46529183	10	6.0	9	76	11	51	33	0	1	64	1.04
46531621--46531665	23	2.0	23	82	8	56	37	8	4	48	1.55
46534019--46534063	23	2.0	23	82	8	56	37	8	4	48	1.55
46535359--46535424	33	2.0	33	82	11	82	50	1	1	46	1.20
46543308--46543449	18	7.4	18	66	15	63	59	7	0	33	1.30
46543308--46543387	40	2.1	38	83	9	99	61	8	0	30	1.26
46543312--46543433	9	13.0	9	67	17	70	59	5	0	34	1.27
46544044--46544316	136	2.0	137	99	0	539	32	1	8	57	1.38
46547857--46548070	118	1.8	118	98	0	419	31	14	17	36	1.90
46552695--46552745	20	2.6	19	84	6	75	27	5	25	41	1.78
46578947--46578977	5	6.0	5	92	7	53	38	0	0	61	0.96
46583749--46583773	13	1.9	13	100	0	50	92	8	0	0	0.40
46584166--46584222	30	1.9	30	88	0	87	24	17	14	43	1.86
46602370--46602400	5	6.0	5	92	7	53	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46602767--46602834	3	23.0	3	86	8	86	29	2	0	67	1.05
46602767--46602853	12	7.0	12	82	8	63	26	3	1	68	1.12
46615025--46615049	12	2.1	12	100	0	50	40	0	0	60	0.97
46619307--46619337	5	6.0	5	92	7	53	38	0	0	61	0.96
46622630--46622699	16	4.4	16	96	0	104	32	35	0	31	1.58
46627602--46627658	30	1.9	30	92	0	96	26	15	14	43	1.85
46640047--46640089	23	2.0	23	86	9	63	46	4	0	48	1.22
46640653--46640691	20	2.0	19	90	5	60	64	0	12	23	1.28
46648914--46648960	14	3.1	14	82	17	58	34	0	0	65	0.93
46650107--46650165	21	2.8	21	81	2	82	59	1	0	38	1.08
46650753--46650793	20	2.0	20	100	0	82	29	4	4	60	1.38
46651380--46651407	14	2.0	14	100	0	56	35	21	7	35	1.81
46665910--46665950	16	2.6	16	92	0	64	31	29	17	21	1.96
46666764--46666824	26	2.3	26	80	5	70	21	6	0	72	1.07
46668852--46668914	8	7.1	9	73	21	53	33	1	1	63	1.13
46668852--46668894	19	2.3	18	84	11	52	27	2	2	67	1.15
46669203--46669538	173	1.9	174	87	3	489	30	11	21	36	1.89
46670109--46670135	2	13.5	2	100	0	54	48	0	0	51	1.00
46671769--46671829	30	2.0	31	90	3	97	49	6	3	40	1.45
46673818--46673875	28	2.0	29	83	12	75	43	0	6	50	1.29
46680523--46680575	26	2.1	26	85	3	72	39	15	1	43	1.57
46687845--46687872	3	9.3	3	100	0	56	35	32	0	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46688419--46688461	3	14.3	3	100	0	86	67	0	0	32	0.91
46694175--46694208	3	11.3	3	87	0	50	35	32	0	32	1.58
46694754--46694801	3	16.0	3	100	0	96	66	0	0	33	0.92
46698145--46698176	17	1.9	17	93	6	57	68	0	0	31	0.90
46698724--46698804	28	3.0	28	77	13	82	38	0	3	58	1.16
46700102--46700141	18	2.2	18	95	0	71	47	22	30	0	1.52
46700102--46700141	6	6.7	6	86	11	55	47	22	30	0	1.52
46707755--46707795	20	2.0	20	100	0	82	24	0	19	56	1.42
46712529--46712567	20	2.0	20	89	0	60	48	20	5	25	1.70
46727576--46727742	87	1.9	86	85	1	226	26	28	24	20	1.99
46730203--46730284	40	2.1	39	81	6	94	40	7	32	19	1.79
46730648--46730696	23	2.1	24	84	3	64	51	2	38	8	1.43
46738414--46738448	18	1.9	18	88	0	52	51	25	14	8	1.70
46746446--46746493	24	2.0	24	83	0	60	50	29	16	4	1.64
46753327--46753619	108	2.7	107	88	4	412	21	22	27	28	1.99
46757033--46757070	14	2.5	15	83	8	51	78	2	5	13	1.02
46774051--46774096	23	2.0	23	82	4	56	71	2	4	21	1.14
46774334--46774703	197	1.9	194	92	5	629	31	18	19	31	1.95
46775495--46775540	23	2.0	23	82	4	56	71	2	4	21	1.14
46775778--46776552	194	3.9	197	91	5	1226	32	17	18	31	1.94
46776614--46776891	110	2.4	110	86	6	369	38	20	13	26	1.90
46776614--46776919	117	2.7	116	85	7	362	39	21	12	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46790855--46791007	75	2.0	77	97	2	292	49	2	3	43	1.34
46790858--46791028	75	2.3	75	91	4	247	50	2	4	42	1.36
46805405--46805440	2	18.0	2	94	0	63	47	0	2	50	1.15
46812193--46812316	41	3.0	41	100	0	248	34	12	19	33	1.89
46820054--46820098	22	2.0	22	91	4	72	57	4	6	31	1.44
46827000--46827234	52	4.5	52	79	7	242	48	6	14	30	1.69
46827000--46827226	53	4.3	52	82	4	240	48	6	14	30	1.69
46829533--46829601	29	2.3	30	80	2	77	43	10	5	40	1.62
46833953--46834269	158	2.0	158	94	0	553	37	14	8	40	1.76
46835230--46835264	15	2.3	15	100	0	70	20	25	14	40	1.90
46836125--46836167	21	2.0	21	95	0	77	55	0	4	39	1.20
46840186--46840236	26	1.9	27	84	11	70	37	1	7	52	1.42
46840371--46840405	13	2.5	15	90	9	56	65	0	0	34	0.93
46841997--46842066	3	23.7	3	97	2	133	34	0	31	34	1.58
46842647--46842784	48	2.9	48	78	4	152	30	17	23	28	1.97
46844701--46844886	47	4.0	47	100	0	372	12	40	25	21	1.89
46845891--46845970	3	25.7	3	77	16	65	33	3	2	60	1.28
46845924--46845981	27	2.1	27	84	6	73	31	6	1	60	1.33
46845986--46846028	21	2.0	21	100	0	86	23	0	9	67	1.19
46846021--46846060	16	2.5	16	91	0	62	42	15	0	42	1.46
46850868--46851170	95	3.2	96	85	3	369	37	2	18	41	1.65
46851762--46851800	19	2.1	19	95	0	69	30	15	28	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46852568--46852610	18	2.4	18	88	0	59	44	9	27	18	1.80
46853252--46853283	7	4.6	7	100	0	64	56	15	0	28	1.40
46853258--46853304	14	3.4	14	85	11	53	57	12	0	29	1.36
46854470--46854524	11	5.0	11	80	6	67	45	1	29	23	1.63
46854471--46854524	22	2.5	22	85	8	74	46	1	29	22	1.62
46862668--46862719	24	2.2	24	82	0	59	50	5	5	38	1.51
46863567--46863597	9	3.4	9	90	0	53	25	12	22	38	1.90
46864474--46864509	5	7.2	5	100	0	72	19	19	19	41	1.90
46869453--46869498	22	2.1	22	95	0	83	23	23	15	36	1.93
46870823--46870880	30	1.9	31	86	10	84	34	3	10	51	1.53
46873317--46873357	21	1.9	22	90	5	66	21	7	12	58	1.58
46873516--46873565	14	3.2	16	72	13	50	46	4	4	46	1.40
46873562--46873633	23	3.3	23	74	18	91	45	16	4	33	1.67
46882802--46882846	18	2.3	20	81	7	58	53	13	0	33	1.40
46891910--46891948	20	1.9	21	89	5	62	10	5	12	71	1.28
46892776--46892961	73	2.6	71	82	7	189	30	12	2	54	1.49
46893663--46893736	26	2.8	26	81	0	85	40	17	20	21	1.91
46893905--46894045	52	2.6	54	83	6	164	21	18	18	41	1.91
46893905--46894045	27	5.3	27	80	11	148	21	18	18	41	1.91
46898153--46898217	24	2.7	24	73	21	64	35	6	1	56	1.33
46911052--46911100	25	1.9	26	83	4	64	16	14	8	61	1.56
46912047--46912638	44	13.6	44	75	8	496	28	14	26	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46912005--46912433	126	3.4	126	86	5	626	28	13	26	31	1.94
46912005--46912636	132	4.9	131	82	6	639	28	14	25	31	1.95
46912005--46912565	258	2.2	257	84	4	711	28	14	26	31	1.95
46912660--46912813	40	3.8	40	75	10	145	27	19	21	31	1.97
46912664--46912818	81	1.9	81	86	5	224	27	19	21	30	1.98
46912646--46913242	216	2.8	216	82	5	705	28	20	22	27	1.99
46913000--46913118	43	2.7	44	74	16	111	26	18	26	27	1.98
46926735--46926812	36	2.2	36	97	0	147	28	10	20	41	1.85
46928550--46928822	46	6.0	46	94	2	469	34	9	28	28	1.88
46935523--46935907	193	2.0	193	96	0	707	24	29	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145