genome.fa.s13.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  16  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6019329--6019390	27	2.3	27	83	10	74	33	3	3	59	1.29
6019321--6019372	17	2.9	17	74	25	54	34	5	0	59	1.21
6019321--6019378	17	3.3	16	73	19	53	32	5	1	60	1.29
6022594--6022657	9	6.9	9	77	12	58	67	1	1	29	1.09
6022595--6022657	19	3.4	18	78	8	65	68	1	1	28	1.08
6022656--6022715	21	2.8	21	80	10	59	58	5	1	35	1.30
6023015--6023064	17	2.7	20	73	23	54	34	0	2	64	1.05
6023017--6023064	20	2.6	19	81	15	57	33	0	2	64	1.05
6028370--6028542	90	1.9	91	91	4	285	44	6	9	39	1.63
6031743--6031791	24	2.0	24	84	7	64	32	6	4	57	1.42
6034255--6034342	42	2.1	42	82	4	106	15	23	17	43	1.87
6034341--6034382	21	2.1	21	86	8	61	9	21	21	47	1.79
6041348--6041389	19	2.3	18	84	11	59	42	4	19	33	1.72
6041797--6041839	16	2.8	14	80	19	50	27	6	0	65	1.18
6044970--6045003	17	2.0	17	88	0	50	44	2	0	52	1.16
6054316--6054546	46	5.0	46	91	2	374	27	26	10	35	1.89
6062759--6062818	30	2.0	31	90	3	95	35	1	0	63	1.05
6063570--6063610	20	2.1	20	95	4	75	75	0	14	9	1.04
6065097--6065133	19	1.9	19	88	0	56	67	2	5	24	1.25
6069033--6069225	51	3.8	49	78	6	208	29	27	18	24	1.98
6069041--6069225	101	1.8	100	91	5	309	29	27	18	24	1.98
6072764--6072812	20	2.3	21	80	16	57	69	0	2	28	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6072839--6072894	10	5.5	10	75	12	51	67	1	3	26	1.16
6072728--6072892	9	17.1	9	68	18	66	64	2	2	30	1.19
6073225--6073304	28	2.8	29	81	9	101	33	0	3	62	1.13
6073225--6073376	27	5.8	25	74	18	96	33	1	2	62	1.17
6073225--6073382	9	17.7	9	68	18	57	33	1	2	62	1.17
6073226--6073384	19	8.9	17	71	15	76	33	1	2	62	1.16
6081543--6081590	25	1.9	25	86	0	69	35	6	2	56	1.36
6081538--6081595	25	2.4	24	77	8	64	39	5	1	53	1.33
6082624--6082666	19	2.2	19	83	8	50	16	13	16	53	1.73
6085960--6086063	48	2.2	48	81	6	113	33	4	1	59	1.29
6085985--6086063	10	8.0	10	73	19	53	34	3	2	59	1.29
6085980--6086031	20	2.5	20	81	9	61	30	5	3	59	1.39
6098008--6098126	62	2.0	60	89	3	184	41	5	10	43	1.60
6111975--6112123	66	2.3	66	74	0	145	31	14	18	35	1.91
6114118--6114178	27	2.3	27	85	0	77	40	31	4	22	1.75
6114569--6114629	27	2.3	27	85	0	77	40	31	4	22	1.75
6114038--6114940	451	2.0	452	98	0	1736	26	19	17	36	1.94
6117332--6117373	15	2.7	16	82	14	52	45	0	2	52	1.13
6117323--6117364	15	2.9	15	82	10	52	47	0	0	52	1.00
6117518--6117608	45	2.0	44	87	2	128	32	28	6	31	1.83
6119879--6119949	30	2.3	31	85	2	90	1	9	5	83	0.87
6119904--6119928	1	25.0	1	100	0	50	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6120625--6120658	17	2.0	16	88	11	50	8	2	0	88	0.62
6128573--6128712	42	3.3	42	85	5	167	41	18	24	15	1.89
6128651--6128715	21	3.1	21	66	16	53	41	15	23	20	1.89
6128723--6128792	32	2.2	32	94	2	122	50	14	18	17	1.79
6131118--6131144	11	2.5	11	100	0	54	62	0	0	37	0.95
6131862--6132358	94	5.3	94	99	0	978	47	5	1	46	1.31
6133311--6133357	23	2.0	25	83	8	62	70	4	4	21	1.22
6135376--6135427	24	2.2	24	89	0	77	36	3	9	50	1.54
6135376--6135439	24	2.7	24	85	4	76	35	3	12	48	1.57
6136876--6136927	24	2.2	24	85	0	68	36	5	7	50	1.55
6144168--6144198	11	2.8	11	90	0	53	32	0	0	67	0.91
6145396--6145435	19	2.0	19	85	9	53	65	5	0	30	1.14
6149162--6149217	21	2.8	20	86	7	78	39	5	1	53	1.34
6149348--6149381	18	1.9	17	88	5	50	41	2	14	41	1.61
6155478--6155509	2	16.0	2	100	0	64	0	0	50	50	1.00
6156176--6156238	27	2.3	27	80	17	69	33	12	3	50	1.56
6157198--6157276	24	3.1	24	74	15	77	35	2	1	60	1.18
6157492--6157564	34	2.1	34	94	0	128	39	9	10	39	1.73
6160044--6160081	19	1.9	20	89	10	60	28	13	7	50	1.69
6167355--6167384	14	2.1	15	93	6	53	36	6	3	53	1.44
6175290--6175329	3	13.3	3	94	0	71	32	65	0	2	1.06
6181603--6181638	18	2.0	18	94	0	63	22	36	27	13	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6182785--6182845	27	2.3	24	76	15	59	42	3	1	52	1.27
6186684--6186719	11	3.3	11	92	0	54	47	8	27	16	1.75
6186791--6186830	19	2.1	19	95	0	71	45	0	25	30	1.54
6202838--6202866	7	4.3	7	95	4	51	89	0	10	0	0.48
6209051--6209147	10	9.7	9	70	15	50	61	4	4	29	1.33
6210290--6210350	19	3.1	19	81	9	70	47	1	0	50	1.10
6210404--6210452	13	3.8	13	72	0	53	32	20	8	38	1.82
6228821--6228876	22	2.4	23	77	16	62	51	1	7	39	1.40
6229242--6229266	2	12.5	2	100	0	50	52	0	0	48	1.00
6229756--6230197	229	1.9	231	94	1	789	23	32	22	21	1.98
6230253--6230521	134	2.0	136	92	2	454	30	16	14	37	1.89
6230574--6230784	106	2.0	106	98	0	404	16	16	49	18	1.80
6230816--6230871	27	2.0	28	86	10	80	8	1	35	53	1.43
6231519--6231691	86	2.0	86	89	0	265	25	26	22	25	2.00
6231697--6231812	41	2.7	44	76	9	123	29	22	18	30	1.97
6231823--6232506	88	7.8	88	89	1	987	25	24	21	27	1.99
6237053--6237139	29	3.0	29	98	0	165	20	9	6	63	1.47
6238257--6238370	61	1.9	60	85	1	156	42	4	14	38	1.65
6240702--6240728	13	2.1	13	100	0	54	44	0	0	55	0.99
6250617--6250662	24	1.9	24	86	0	65	13	26	15	45	1.82
6252061--6252129	22	3.1	22	74	19	72	40	17	5	36	1.74
6252051--6252108	22	2.6	22	84	7	73	43	17	3	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6252064--6252180	19	5.8	19	82	11	101	37	16	10	35	1.82
6252080--6252180	40	2.7	38	79	14	127	35	16	10	36	1.84
6253211--6253254	5	9.0	5	85	5	63	77	2	0	20	0.88
6253226--6253260	15	2.3	15	90	0	52	77	0	5	17	0.96
6267273--6267297	7	3.6	7	100	0	50	0	12	16	72	1.13
6269790--6269814	7	3.6	7	100	0	50	0	12	16	72	1.13
6272153--6272223	35	2.0	35	100	0	142	32	19	11	36	1.87
6272539--6272584	23	2.0	23	86	0	65	6	8	13	71	1.29
6278849--6279021	85	2.0	86	98	1	339	52	10	3	34	1.53
6293657--6293712	17	3.2	17	79	2	58	16	5	1	76	1.05
6303717--6303806	44	2.0	44	100	0	180	30	31	14	24	1.95
6306451--6306488	16	2.3	17	86	9	60	36	0	0	63	0.95
6306459--6306515	22	2.5	24	78	13	68	26	3	0	70	1.03
6307072--6307116	21	2.1	22	87	4	65	37	0	4	57	1.19
6322884--6322923	19	2.1	19	85	4	53	42	2	0	55	1.13
6329996--6330257	132	2.0	132	89	3	404	29	12	23	33	1.92
6338077--6338114	14	2.8	14	88	4	51	81	7	7	2	0.96
6345715--6345739	4	6.2	4	100	0	50	52	0	0	48	1.00
6345727--6345775	17	2.9	17	75	22	50	57	2	0	40	1.10
6346775--6346815	18	2.3	18	87	8	57	46	2	0	51	1.14
6375015--6375093	30	2.6	30	82	11	90	63	2	1	32	1.16
6375057--6375102	21	2.2	21	84	7	58	67	2	4	26	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6398674--6398711	14	2.7	14	88	8	51	44	2	10	42	1.52
6398714--6398750	15	2.5	15	86	4	58	32	8	16	43	1.77
6398906--6398969	17	3.6	17	73	10	56	40	0	3	56	1.15
6398907--6398987	36	2.2	38	93	4	139	39	1	3	55	1.25
6398921--6398979	18	3.3	18	81	9	84	35	0	5	59	1.20
6400881--6400920	14	2.9	14	84	0	53	32	7	17	42	1.77
6400889--6400955	35	1.9	35	87	3	100	31	10	13	44	1.77
6400904--6400943	20	2.0	20	85	0	53	27	12	12	47	1.77
6411368--6411416	20	2.5	20	82	0	53	57	2	4	36	1.30
6412710--6412742	17	2.0	17	94	5	59	48	24	6	21	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145