genome.fa.s13.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  35  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12596015--12596128	46	2.5	46	82	2	131	27	17	23	31	1.97
12596162--12596500	44	7.7	45	65	14	168	31	17	24	25	1.97
12596096--12596633	132	4.1	132	95	0	932	32	18	23	25	1.97
12596973--12597012	17	2.4	17	91	8	64	47	42	5	5	1.47
12598107--12598165	25	2.3	27	91	5	95	22	5	11	61	1.50
12602960--12603508	274	2.0	275	99	0	1091	41	9	9	40	1.68
12603494--12603762	87	3.1	88	83	5	303	38	18	10	32	1.84
12603881--12603928	10	4.9	10	84	5	62	60	2	0	37	1.09
12603893--12603924	9	3.4	9	95	4	55	59	0	0	40	0.97
12603883--12603924	19	2.2	19	86	0	57	61	2	0	35	1.09
12603892--12603934	19	2.3	19	80	8	52	62	0	2	34	1.08
12604176--12604284	18	5.9	18	70	20	73	31	5	4	58	1.41
12604174--12604284	9	12.0	9	68	19	59	31	5	4	58	1.41
12604467--12604647	87	2.1	86	80	9	197	29	9	22	38	1.86
12604960--12604997	20	1.9	20	89	10	60	39	2	13	44	1.57
12616247--12616289	17	2.4	19	81	14	56	60	4	0	34	1.17
12616981--12617028	13	3.6	14	73	23	50	70	6	2	20	1.19
12616981--12617029	12	3.8	13	76	23	50	69	6	2	22	1.21
12624665--12624782	6	19.7	6	99	0	173	67	10	16	5	1.38
12624665--12624827	6	27.2	6	98	0	164	63	11	16	9	1.52
12628614--12628667	27	2.0	27	96	0	99	42	11	5	40	1.64
12629553--12629595	11	3.8	11	80	17	52	30	2	2	65	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12629556--12629599	23	1.9	23	90	0	70	31	2	4	61	1.28
12634588--12634623	18	2.1	18	89	5	56	38	22	2	36	1.69
12647852--12647902	26	1.9	26	84	11	68	54	11	11	21	1.68
12649532--12649574	4	10.8	4	85	9	61	23	0	0	76	0.78
12649388--12649819	216	2.0	216	99	0	848	21	12	12	53	1.71
12649748--12649790	4	10.8	4	85	9	61	25	0	0	74	0.82
12650996--12651028	17	1.9	17	93	0	57	48	0	15	36	1.45
12655897--12655971	33	2.3	33	83	0	105	16	46	18	18	1.84
12657879--12657944	34	1.9	34	87	0	96	30	10	3	56	1.49
12665453--12665509	23	2.4	23	82	8	62	33	1	3	61	1.23
12665467--12665512	24	2.0	23	91	4	74	30	2	2	65	1.16
12665886--12665918	15	2.2	15	94	0	57	24	0	12	63	1.28
12677455--12678084	131	4.8	131	90	1	958	28	15	25	30	1.96
12677455--12678084	263	2.4	262	90	2	985	28	15	25	30	1.96
12677455--12678111	132	5.0	131	88	2	899	28	15	25	29	1.96
12678389--12678972	44	13.5	44	68	13	257	28	18	23	28	1.98
12678386--12678788	84	4.7	85	68	16	235	28	19	22	29	1.98
12678463--12678877	89	4.7	88	70	13	259	28	19	22	28	1.98
12678423--12678967	261	2.1	262	97	2	1055	28	19	22	29	1.98
12678552--12678972	128	3.2	129	74	9	503	28	19	23	29	1.98
12678941--12679058	45	2.6	45	82	2	130	29	25	22	22	1.99
12681619--12681648	8	3.8	8	90	0	51	46	16	10	26	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12681753--12681787	18	1.9	18	94	0	61	11	37	28	22	1.89
12688300--12688337	11	3.3	11	92	7	58	84	0	15	0	0.63
12688301--12688331	16	2.0	15	93	6	53	90	0	9	0	0.46
12688302--12688349	21	2.2	22	81	3	62	83	2	12	2	0.83
12688708--12688753	22	2.1	22	95	0	83	39	19	0	41	1.52
12690567--12690601	18	1.9	18	94	0	61	25	31	8	34	1.86
12691135--12691483	29	13.3	29	75	18	220	46	26	0	26	1.58
12691135--12691413	50	5.2	59	74	20	213	46	26	0	26	1.58
12691201--12691778	23	23.8	23	74	19	452	47	24	0	27	1.55
12691244--12691287	21	2.2	19	92	8	70	50	25	0	25	1.50
12691201--12691532	148	2.2	148	96	0	610	47	24	0	27	1.56
12691312--12691778	73	6.5	71	77	14	440	47	24	0	28	1.54
12691511--12691592	21	3.8	21	80	12	103	47	23	0	29	1.52
12691658--12691769	29	4.1	29	76	17	132	46	27	0	25	1.53
12692050--12692091	17	2.4	18	80	4	50	42	9	2	45	1.49
12695092--12695443	124	2.8	126	89	4	527	33	22	15	29	1.94
12695092--12695443	126	2.8	123	88	5	519	33	22	15	29	1.94
12701236--12701271	1	36.0	1	94	0	63	0	2	0	97	0.18
12701449--12701480	1	32.0	1	100	0	64	0	0	0	100	0.00
12710491--12710533	21	2.0	21	82	8	52	32	0	6	60	1.23
12710726--12710817	44	2.0	46	87	8	136	35	26	5	32	1.79
12710799--12710869	16	4.4	16	92	3	99	29	28	7	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12711992--12712060	27	2.6	27	100	0	138	37	36	2	23	1.70
12715486--12715511	13	2.0	13	100	0	52	46	0	23	30	1.53
12719289--12719322	6	5.7	6	100	0	68	14	50	0	35	1.44
12720077--12720112	15	2.4	15	100	0	72	16	30	36	16	1.91
12720486--12720542	19	2.9	19	86	2	78	33	0	14	52	1.41
12720513--12720565	27	2.0	27	92	0	88	35	0	15	49	1.45
12720493--12720615	46	2.7	47	85	12	175	34	0	13	51	1.47
12720462--12720542	22	4.0	21	85	9	96	32	0	12	55	1.37
12720669--12720773	52	2.0	52	90	0	165	35	0	12	51	1.46
12722941--12722984	6	7.3	6	92	0	61	31	36	31	0	1.58
12722938--12722984	24	2.0	24	91	0	76	29	38	31	0	1.58
12726236--12726280	22	2.1	21	87	4	63	2	31	2	64	1.18
12726346--12726421	27	2.8	28	82	7	95	23	38	21	17	1.93
12727159--12727190	5	6.2	5	96	3	55	21	0	0	78	0.76
12738413--12738463	27	1.9	27	84	11	70	60	15	15	7	1.56
12747611--12747648	1	38.0	1	89	0	58	0	5	0	94	0.30
12751879--12751923	2	22.5	2	95	0	81	51	2	0	46	1.13
12752030--12752054	12	2.1	12	100	0	50	76	0	0	24	0.80
12753520--12754439	130	7.0	131	92	0	1407	24	25	19	30	1.98
12768581--12768605	12	2.1	12	100	0	50	60	0	8	32	1.26
12768850--12768894	2	22.5	2	95	0	81	51	2	0	46	1.13
12777265--12777290	13	2.0	13	100	0	52	46	7	7	38	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12778910--12778995	41	2.1	41	91	0	136	36	6	12	44	1.70
12780530--12780583	26	2.1	26	89	3	83	35	20	22	22	1.96
12784862--12784907	24	2.0	24	83	12	60	43	26	8	21	1.81
12793835--12793870	18	2.0	18	94	0	63	38	30	11	19	1.86
12795820--12795875	25	2.3	23	76	11	58	51	1	3	42	1.29
12796045--12796087	22	2.0	22	90	0	68	30	0	0	69	0.88
12796579--12796669	42	2.2	42	86	4	121	31	30	13	24	1.93
12797487--12797540	24	2.3	24	80	3	65	46	18	14	20	1.84
12801483--12802320	41	20.8	41	88	3	1191	29	26	23	19	1.98
12802166--12802222	28	2.0	28	89	0	87	21	21	29	28	1.98
12802126--12802263	69	2.0	69	92	0	231	27	24	25	22	2.00
12802085--12802305	110	2.0	110	91	1	354	28	25	24	21	1.99
12802291--12802422	40	3.4	39	73	7	115	21	19	21	37	1.95
12803286--12803322	19	1.9	19	88	0	56	51	2	0	45	1.15
12806258--12806288	4	7.8	4	92	0	53	70	0	0	29	0.87
12808325--12808404	38	2.1	38	100	0	160	38	12	16	32	1.86
12811957--12812095	40	3.5	39	79	6	147	31	23	17	26	1.97
12812254--12812300	24	2.0	24	84	16	62	51	17	0	31	1.46
12815158--12815359	110	1.8	112	97	2	390	37	4	4	52	1.45
12836398--12838419	4	505.5	4	99	0	4026	50	24	0	24	1.51
12838417--12838476	4	15.0	4	100	0	120	25	50	0	25	1.50
12838504--12838764	128	2.0	128	94	0	459	41	15	7	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12842262--12842314	26	2.1	26	86	6	74	45	1	0	52	1.11
12845281--12845420	42	3.3	42	84	2	192	35	12	21	30	1.91
12847198--12847417	91	2.5	88	81	7	225	34	16	20	29	1.94
12859121--12859178	28	2.0	30	86	10	84	62	1	0	36	1.06
12866015--12866242	114	2.0	114	98	0	438	34	20	18	25	1.96
12866804--12867148	170	2.0	170	96	0	636	33	13	21	30	1.93
12869686--12869738	23	2.3	23	96	0	97	24	20	24	30	1.99
12878615--12878661	16	2.8	17	80	6	60	2	40	0	57	1.11
12878614--12878664	17	3.1	17	80	5	68	1	37	0	60	1.08
12885754--12885778	5	5.0	5	100	0	50	20	20	20	40	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145