genome.fa.s13.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  95  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32472239--32472570	166	2.0	166	95	0	601	36	17	16	29	1.92
32480777--32480828	24	2.3	21	78	15	50	36	1	5	55	1.35
32482911--32482968	29	2.0	29	96	0	107	43	10	13	32	1.78
32483658--32483693	17	2.1	17	90	10	56	25	27	0	47	1.52
32487057--32487172	25	4.7	24	77	10	101	19	26	20	32	1.97
32487093--32487224	50	2.7	49	78	5	131	20	26	21	31	1.98
32488622--32488694	8	9.1	8	79	11	78	80	0	2	16	0.82
32488626--32488693	5	13.4	5	73	14	50	80	0	2	16	0.82
32488611--32488688	27	3.0	27	85	7	92	78	0	3	17	0.90
32488622--32488695	22	3.2	22	75	22	71	79	0	2	17	0.84
32489810--32489950	69	2.0	69	90	0	219	27	19	19	32	1.97
32492694--32492729	15	2.5	14	86	8	54	44	8	0	47	1.33
32497834--32497873	19	2.1	19	85	0	53	45	7	7	40	1.61
32498137--32498568	215	2.0	216	99	0	857	36	9	7	46	1.65
32499271--32499334	31	2.1	31	87	0	92	50	10	7	31	1.66
32499328--32499366	10	3.9	10	93	0	51	58	0	0	41	0.98
32499336--32499366	2	15.5	2	93	0	53	54	0	0	45	0.99
32500048--32500087	20	2.0	20	100	0	80	0	75	0	25	0.81
32502183--32502275	45	2.1	45	95	0	168	41	8	22	26	1.82
32507163--32507193	5	6.2	5	100	0	62	19	0	41	38	1.51
32515839--32515971	65	2.0	65	100	0	266	30	18	21	30	1.97
32530684--32530710	3	9.0	3	100	0	54	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32533796--32533828	2	16.5	2	100	0	66	0	48	0	51	1.00
32536574--32536621	25	2.0	24	83	4	60	35	8	12	43	1.73
32537415--32537491	18	4.2	18	70	20	52	58	2	2	36	1.26
32537530--32537583	28	2.0	28	85	3	74	62	5	1	29	1.28
32540022--32540056	17	2.1	17	100	0	70	34	5	11	48	1.63
32541854--32541916	9	6.5	10	73	12	51	26	3	0	69	1.03
32541854--32541936	20	4.1	20	74	10	69	25	2	2	69	1.12
32542826--32542873	23	2.0	23	84	12	60	50	4	6	39	1.47
32547785--32548041	53	4.8	53	81	4	286	27	22	14	36	1.92
32547785--32548041	106	2.4	106	84	0	343	27	22	14	36	1.92
32557364--32557415	20	2.8	18	78	21	63	51	3	1	42	1.31
32563559--32563615	23	2.5	23	100	0	114	49	3	15	31	1.62
32564302--32564328	3	9.0	3	100	0	54	33	0	66	0	0.92
32566217--32566257	2	21.0	2	95	5	75	48	0	0	51	1.00
32569541--32569590	6	8.2	6	93	2	82	16	20	0	64	1.30
32592025--32592066	21	2.0	21	90	0	66	38	23	0	38	1.55
32597485--32597619	41	3.3	40	80	11	166	29	22	25	22	1.99
32603566--32603602	19	1.9	19	94	0	65	18	10	5	64	1.43
32613076--32613114	13	3.2	12	86	13	53	74	7	2	15	1.15
32613605--32613664	26	2.3	26	83	8	77	75	1	3	20	1.04
32614173--32614229	21	2.7	21	94	0	105	36	10	10	42	1.74
32614150--32614224	21	3.5	20	85	7	78	38	13	9	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32618288--32618317	2	15.0	2	100	0	60	50	50	0	0	1.00
32625808--32625854	23	2.1	22	84	7	60	46	2	8	42	1.46
32628231--32628259	4	7.2	4	100	0	58	27	0	24	48	1.51
32634437--32634554	62	2.0	61	89	5	186	27	29	14	27	1.95
32641230--32641280	23	2.2	23	82	6	59	52	0	7	39	1.30
32647576--32647630	20	2.8	20	91	0	83	49	9	9	32	1.66
32648485--32648529	21	2.1	21	84	8	56	13	57	15	13	1.65
32653990--32654048	30	1.9	31	83	10	77	33	6	8	50	1.59
32663165--32663437	17	15.1	17	68	24	109	47	10	13	27	1.76
32663257--32663423	18	8.3	19	72	23	121	49	10	13	26	1.75
32663200--32663423	62	3.6	62	91	2	344	49	10	12	27	1.74
32663290--32663340	26	1.9	26	88	4	75	50	11	15	21	1.76
32663345--32663402	26	2.1	29	78	12	68	51	12	15	20	1.75
32663387--32663437	15	3.1	15	83	13	57	47	11	15	25	1.80
32663381--32663441	19	3.5	18	77	22	67	45	9	13	31	1.75
32663421--32663487	22	3.0	22	68	20	59	40	8	10	40	1.71
32664171--32664216	20	2.3	20	85	10	60	13	17	34	34	1.88
32664335--32664382	14	3.4	14	88	8	71	0	29	0	70	0.87
32664513--32664555	14	2.9	15	82	10	52	2	6	13	76	1.08
32664495--32664555	15	4.2	14	73	19	54	1	9	9	78	1.03
32665394--32665457	5	13.0	5	76	15	62	71	1	1	25	1.03
32665575--32666113	79	7.1	75	76	12	406	33	20	16	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32665573--32666106	152	3.5	152	75	9	455	34	20	16	28	1.95
32665571--32666135	154	3.7	152	75	13	548	35	19	16	28	1.94
32666989--32667046	15	3.9	14	80	17	64	0	10	6	82	0.83
32666993--32667054	20	3.3	19	84	10	74	0	8	8	83	0.80
32667011--32667053	6	6.8	6	80	19	52	0	4	11	83	0.78
32678518--32678613	41	2.4	39	77	16	99	39	6	17	36	1.75
32678583--32678660	34	2.3	34	80	4	86	48	12	14	24	1.78
32678575--32678832	18	13.2	18	70	23	141	47	9	13	28	1.75
32678621--32678829	44	5.0	43	70	16	159	49	10	13	26	1.73
32678610--32678832	62	3.6	62	90	3	344	48	9	13	28	1.73
32678834--32678889	20	2.6	21	76	21	62	48	10	8	32	1.69
32678830--32678883	21	2.6	20	77	16	65	44	11	9	35	1.72
32678790--32678891	21	5.4	19	68	21	63	47	7	10	34	1.68
32678901--32678948	17	2.8	17	81	12	62	45	12	14	27	1.81
32679450--32679495	21	2.2	21	84	0	56	17	30	0	52	1.45
32679458--32679499	21	2.0	21	100	0	84	14	23	0	61	1.32
32679697--32679829	30	4.5	30	69	11	85	40	9	21	27	1.85
32679856--32679893	11	3.1	12	85	14	51	44	0	2	52	1.14
32680033--32680090	5	12.0	5	76	10	50	72	1	1	24	1.03
32682583--32682646	17	3.6	17	74	15	58	29	10	10	48	1.73
32682575--32682645	36	2.0	36	94	0	124	28	11	12	47	1.76
32682850--32682944	48	2.0	48	95	0	172	17	17	23	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32686260--32686324	27	2.4	28	92	2	105	43	10	0	46	1.38
32686363--32686425	27	2.3	27	91	0	99	25	23	36	14	1.93
32686797--32686826	16	1.9	15	93	6	51	70	0	0	30	0.88
32698009--32698103	48	2.0	48	95	0	172	17	17	23	41	1.90
32701419--32701484	28	2.4	28	94	0	114	42	10	0	46	1.38
32701647--32701715	19	3.7	18	79	12	86	36	10	1	52	1.44
32701647--32701721	18	4.1	18	78	13	82	36	10	1	52	1.45
32701651--32701721	37	1.9	37	97	0	133	38	11	1	49	1.48
32702949--32703011	27	2.4	26	91	2	108	49	0	7	42	1.32
32704073--32704253	75	2.4	77	84	3	251	40	9	6	42	1.64
32704073--32704283	77	2.8	75	82	5	255	43	10	6	39	1.65
32715640--32715690	25	2.1	24	88	3	75	43	21	25	9	1.83
32718448--32718518	29	2.5	28	75	6	70	23	8	9	57	1.58
32720232--32720319	22	4.0	22	84	0	104	30	10	12	46	1.75
32720232--32720319	44	2.0	44	88	0	131	30	10	12	46	1.75
32721149--32721229	30	2.7	29	85	11	101	55	6	0	38	1.25
32721147--32721229	31	2.7	31	83	10	109	54	6	0	39	1.25
32726637--32726671	18	2.0	17	88	5	52	45	0	0	54	0.99
32726831--32726925	45	2.1	44	86	1	127	33	26	8	31	1.86
32726904--32726973	16	4.4	16	96	0	104	32	35	0	31	1.58
32727430--32727468	20	1.9	21	84	5	53	12	28	0	58	1.34
32728115--32728242	38	3.3	39	74	12	113	30	3	56	10	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32728127--32728241	39	3.1	35	77	18	99	32	2	54	10	1.48
32728144--32728242	39	2.5	41	81	13	113	30	3	55	11	1.50
32728669--32728754	41	2.1	41	100	0	172	32	2	0	65	1.06
32728690--32728803	31	3.7	30	86	6	133	37	2	0	59	1.11
32728676--32728777	41	2.4	41	88	6	143	38	2	0	58	1.13
32729426--32729589	25	6.6	25	80	5	136	18	34	17	29	1.94
32729426--32729589	75	2.2	75	81	6	197	18	34	17	29	1.94
32729426--32729589	50	3.3	51	79	8	194	18	34	17	29	1.94
32729707--32729765	25	2.4	25	91	0	91	66	22	10	1	1.31
32735096--32735185	44	2.0	45	89	2	137	28	25	14	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145