genome.fa.s13.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  47  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16528102--16528138	9	4.1	9	92	0	65	45	13	10	29	1.77
16528977--16529006	8	3.8	8	100	0	60	40	36	0	23	1.55
16529873--16529921	18	3.1	15	78	18	55	26	4	2	67	1.19
16531464--16531493	4	7.2	4	92	7	51	46	23	0	30	1.52
16531461--16531493	12	2.6	13	90	9	59	45	24	0	30	1.53
16544478--16544525	25	1.9	25	95	0	87	43	25	10	20	1.83
16544486--16544538	25	2.1	25	82	6	63	47	26	7	18	1.75
16558585--16558614	9	3.3	9	90	0	51	10	20	3	66	1.35
16562079--16562321	43	5.7	43	83	7	291	23	19	27	29	1.98
16562079--16562321	127	1.9	129	82	6	307	23	19	27	29	1.98
16565958--16566061	49	2.2	47	83	13	126	8	52	1	36	1.43
16567960--16568016	30	2.0	30	83	13	75	47	0	5	47	1.24
16568492--16568524	9	3.7	9	91	0	57	24	12	21	42	1.86
16575248--16575288	21	2.0	21	85	0	55	43	31	4	19	1.72
16575992--16576029	18	2.1	18	100	0	76	36	26	5	31	1.79
16576120--16576151	9	3.8	9	84	16	50	71	0	0	28	0.86
16576582--16576745	90	1.8	89	80	6	197	32	11	17	38	1.85
16578728--16578758	15	2.0	16	93	6	55	0	38	0	61	0.96
16583618--16583674	6	9.5	6	96	0	105	15	29	0	54	1.42
16592425--16592456	14	2.4	13	90	10	55	75	0	0	25	0.81
16594625--16594692	27	2.5	27	82	0	82	20	27	16	35	1.94
16597286--16597312	13	2.1	13	100	0	54	55	0	14	29	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16597912--16597963	20	2.6	20	82	11	54	69	5	0	25	1.10
16597946--16597974	6	4.8	6	100	0	58	65	17	0	17	1.27
16597988--16598039	9	5.8	9	90	0	86	23	9	25	42	1.84
16597990--16598039	18	2.8	18	100	0	100	24	10	24	42	1.85
16603075--16603119	6	7.5	6	100	0	90	31	0	51	17	1.46
16604596--16604630	16	2.2	16	100	0	70	22	0	34	42	1.54
16604857--16604893	18	2.1	18	90	10	58	59	0	5	35	1.20
16606737--16606785	8	6.1	8	81	6	55	57	0	2	40	1.10
16613383--16613454	16	4.5	16	80	0	72	38	2	29	29	1.71
16613417--16613559	62	2.3	62	98	0	277	32	4	27	34	1.78
16617893--16617960	9	7.4	9	82	9	84	41	27	8	22	1.83
16622029--16622416	194	2.0	193	97	0	740	29	20	9	40	1.83
16623180--16623256	18	4.4	18	83	4	88	38	23	7	29	1.83
16625689--16625760	21	3.3	21	90	5	99	54	13	20	11	1.70
16628513--16628538	7	3.7	7	100	0	52	15	0	11	73	1.11
16636526--16636559	12	2.9	12	91	4	52	64	0	2	32	1.08
16643281--16643339	30	2.0	30	89	0	91	38	8	25	27	1.84
16643781--16643825	23	2.0	23	95	0	81	17	20	26	35	1.95
16643783--16643832	23	2.2	23	88	0	73	22	16	28	34	1.95
16663343--16663373	5	6.4	5	92	7	55	54	0	0	45	0.99
16663346--16663373	14	2.0	14	100	0	56	57	0	0	42	0.99
16666402--16666438	8	4.8	8	90	6	58	83	0	0	16	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16666402--16666438	15	2.4	16	95	4	67	83	0	0	16	0.64
16677931--16677994	27	2.4	27	85	10	80	20	18	28	32	1.96
16680672--16680738	17	4.1	16	75	12	55	38	23	11	25	1.89
16692018--16692051	17	1.9	18	88	5	52	11	5	29	52	1.61
16693908--16693959	26	2.0	26	96	0	95	53	19	1	25	1.55
16705671--16705791	30	4.0	31	88	3	122	26	23	8	42	1.82
16705717--16705791	15	4.9	16	66	11	59	25	22	6	45	1.77
16714057--16714220	72	2.3	72	84	4	215	23	5	14	56	1.58
16715798--16715846	13	3.8	13	77	0	62	34	28	6	30	1.82
16721942--16722003	31	2.0	31	87	0	88	43	11	8	37	1.70
16721955--16722024	31	2.2	32	80	7	81	48	10	7	34	1.64
16723320--16723366	19	2.4	19	86	10	60	23	14	0	61	1.33
16726565--16726622	26	2.3	25	90	3	89	31	17	6	44	1.75
16726565--16726635	26	2.8	26	85	6	83	33	15	7	43	1.74
16730876--16731038	73	2.2	73	81	5	204	34	19	17	28	1.94
16730876--16731223	37	9.7	36	75	9	223	31	20	17	30	1.95
16730978--16731076	36	2.9	33	83	8	92	32	20	19	28	1.97
16731157--16731232	39	1.9	39	91	0	125	32	19	14	32	1.92
16739690--16739795	54	2.0	54	87	7	153	27	22	32	17	1.97
16739832--16739870	19	2.1	19	85	0	51	15	35	25	23	1.94
16742171--16742218	20	2.5	20	83	9	57	43	2	4	50	1.33
16746553--16746711	39	4.1	39	100	0	318	37	20	12	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16747407--16748231	412	2.0	414	94	0	1456	33	22	17	26	1.96
16750675--16750706	12	2.8	11	90	9	55	37	9	15	37	1.80
16751513--16751685	91	1.9	91	93	0	301	31	23	12	32	1.92
16751549--16751689	45	3.1	45	64	9	115	32	24	12	29	1.93
16752928--16752993	35	1.9	34	87	6	98	31	7	12	48	1.68
16755675--16755738	30	2.2	30	82	2	76	53	9	14	23	1.69
16755683--16755753	30	2.4	30	85	0	97	46	9	18	25	1.79
16757829--16757883	19	2.8	20	75	8	60	27	5	0	67	1.12
16758467--16758588	43	2.8	43	88	0	190	27	27	20	24	1.99
16758650--16758704	19	3.0	18	79	17	60	58	1	3	36	1.26
16759791--16760170	43	8.8	43	83	0	463	26	28	19	25	1.99
16759791--16760184	86	4.6	86	91	2	569	26	29	19	24	1.98
16763582--16763630	14	3.4	14	78	15	55	32	42	2	22	1.65
16763653--16763697	14	3.1	14	90	6	72	33	40	0	26	1.57
16763649--16763694	15	3.2	15	87	9	69	39	34	0	26	1.57
16763469--16764405	298	3.1	302	83	9	1101	40	27	2	29	1.70
16763933--16763984	14	3.7	15	78	17	58	42	28	0	28	1.56
16763925--16764000	22	3.5	22	66	16	52	40	30	0	28	1.57
16764168--16764270	15	6.9	14	73	17	73	32	44	0	23	1.54
16764207--16764274	23	3.0	23	95	4	122	29	47	0	23	1.52
16764494--16764665	88	2.0	86	89	6	269	44	9	8	37	1.68
16764644--16764804	41	3.9	41	94	1	279	26	31	22	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16771719--16771773	27	2.0	27	82	6	67	43	3	1	50	1.30
16775916--16775952	9	4.1	9	92	0	65	45	13	10	29	1.77
16781022--16781059	20	1.9	20	88	0	58	50	15	2	31	1.58
16781385--16781452	4	15.8	4	81	14	57	1	23	1	73	1.00
16784285--16784333	21	2.3	20	80	13	53	34	4	0	61	1.15
16784282--16784345	22	3.0	22	77	9	69	32	4	0	62	1.16
16785084--16785164	29	2.8	28	85	9	92	29	4	2	62	1.29
16785084--16785159	30	2.6	30	85	10	95	28	5	2	63	1.30
16785360--16785418	29	2.0	30	83	3	75	55	8	11	23	1.63
16785846--16785908	27	2.3	27	97	0	117	28	23	34	12	1.92
16788575--16788637	28	2.3	27	86	2	81	52	1	9	36	1.44
16790671--16790703	10	3.4	10	91	4	50	69	6	0	24	1.10
16791168--16791229	28	2.2	29	82	2	72	38	4	3	53	1.39
16802375--16802463	46	2.0	44	95	4	160	35	8	22	32	1.85
16812195--16812227	3	11.0	3	100	0	66	33	0	0	66	0.92
16819556--16819604	26	1.9	25	84	12	64	46	8	26	18	1.76
16819554--16819610	26	2.2	25	75	9	62	54	7	22	15	1.65
16824115--16824175	24	2.6	24	84	2	88	18	21	9	50	1.75
16824142--16824255	40	2.8	40	84	2	131	18	22	7	50	1.72
16833221--16833273	3	17.7	3	100	0	106	33	0	32	33	1.58
16835850--16835985	65	2.1	65	100	0	272	41	13	10	33	1.79
16837760--16837785	3	8.7	3	100	0	52	0	65	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16840518--16840564	23	2.1	23	84	11	62	21	2	4	72	1.12
16843230--16843353	66	1.9	66	80	6	144	30	8	6	54	1.55
16843952--16844014	30	2.1	30	93	0	108	25	3	14	57	1.52
16858342--16858387	14	3.3	14	93	0	83	56	2	0	41	1.11
16858332--16858398	28	2.3	28	76	5	80	44	2	0	52	1.16
16865189--16865304	25	4.7	25	81	6	83	28	20	25	25	1.99
16865234--16865305	25	3.0	24	83	4	99	30	20	29	19	1.97
16866700--16866784	18	4.5	18	71	23	59	52	2	5	38	1.38
16875416--16875474	21	2.8	21	78	0	73	20	38	20	20	1.93
16882785--16882832	20	2.3	20	79	10	53	31	0	10	58	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145