genome.fa.s13.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  138  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45548790--45548845	29	1.9	29	100	0	112	21	14	35	28	1.92
45548749--45548888	70	2.0	70	92	0	235	24	17	31	26	1.97
45548708--45548927	111	2.0	111	95	0	395	25	18	30	25	1.98
45550332--45550466	36	3.8	36	75	0	135	28	22	7	41	1.80
45550285--45550470	72	2.6	72	84	1	230	31	21	8	38	1.84
45551588--45551645	28	2.1	28	87	6	82	32	12	3	51	1.56
45553770--45553912	62	2.3	62	97	1	270	44	20	4	30	1.71
45554801--45554859	29	2.0	29	100	0	118	27	13	20	38	1.90
45559440--45559496	28	2.0	28	100	0	114	49	12	10	28	1.73
45560838--45560883	12	3.7	12	88	5	56	52	36	0	10	1.37
45560835--45560868	2	17.0	2	87	0	50	52	44	0	2	1.16
45566635--45566670	6	6.0	6	93	0	54	0	0	61	38	0.96
45570294--45570333	15	2.5	17	80	19	50	25	12	42	20	1.86
45572796--45572826	16	1.9	16	93	0	53	51	19	0	29	1.47
45576910--45576966	29	2.1	28	81	12	66	22	21	19	36	1.95
45577638--45577719	31	2.8	27	75	15	74	42	14	8	34	1.76
45578481--45578610	34	3.8	34	76	6	111	30	10	15	44	1.79
45578777--45578962	87	2.1	87	86	2	248	25	23	14	36	1.93
45580318--45580399	31	2.8	27	78	15	83	43	14	7	34	1.73
45581161--45581255	35	2.7	35	80	7	106	29	9	13	47	1.74
45581458--45581641	87	2.1	87	89	0	278	26	21	14	36	1.92
45583625--45583667	21	2.1	21	86	4	61	48	4	6	39	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45588043--45588377	167	2.0	168	98	0	654	37	9	10	42	1.72
45588121--45588374	82	3.1	82	65	12	228	37	9	11	41	1.73
45590797--45590830	8	4.2	8	96	0	59	26	0	0	73	0.83
45601870--45601901	2	16.0	2	93	0	55	46	0	0	53	1.00
45604150--45604193	24	1.9	24	90	9	74	50	6	4	38	1.50
45610562--45610622	16	3.9	15	74	6	50	63	0	3	32	1.10
45616318--45616387	33	2.1	33	84	5	88	30	1	0	68	0.98
45616327--45616390	24	2.7	24	76	11	60	28	1	0	70	0.97
45616942--45616985	15	2.9	16	80	10	56	45	0	9	45	1.35
45620203--45620260	29	2.1	27	80	6	62	48	3	8	39	1.51
45620225--45620367	49	2.9	49	98	1	279	47	4	7	40	1.51
45620587--45620611	5	5.0	5	100	0	50	0	0	20	80	0.72
45623159--45623214	8	7.1	8	83	4	78	51	1	0	46	1.11
45625405--45625450	24	1.9	24	100	0	92	30	19	8	41	1.82
45628046--45628101	3	18.7	3	96	0	103	32	1	0	66	1.03
45628100--45628125	3	8.7	3	100	0	52	0	0	30	69	0.89
45633118--45633188	6	12.0	6	79	11	58	83	15	0	1	0.73
45633122--45633190	9	7.8	9	82	9	79	84	14	0	1	0.70
45633119--45633195	26	3.0	25	83	5	84	84	12	0	2	0.73
45633119--45633195	18	4.4	17	81	4	82	84	12	0	2	0.73
45634437--45634575	45	3.2	45	68	11	117	28	24	25	21	1.99
45634555--45634938	132	2.9	132	90	1	610	28	18	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45634816--45635304	237	2.1	237	98	0	933	29	17	23	28	1.97
45636599--45636654	3	18.7	3	96	0	103	32	1	0	66	1.03
45636653--45636678	3	8.7	3	100	0	52	0	0	30	69	0.89
45638211--45638258	24	2.0	24	83	0	60	70	6	4	18	1.25
45638389--45638439	15	3.5	15	69	15	52	52	15	9	21	1.71
45641237--45641352	54	2.1	55	84	7	148	42	3	3	50	1.36
45641540--45641586	16	3.0	15	82	11	67	29	19	2	48	1.60
45644339--45644399	24	2.5	24	84	7	79	67	1	4	26	1.20
45646254--45646311	28	2.1	28	100	0	116	44	6	20	27	1.77
45650879--45650909	15	2.1	15	100	0	62	25	12	12	48	1.77
45662325--45662383	30	2.0	30	83	12	77	27	16	8	47	1.76
45681625--45681706	19	4.1	20	79	13	96	40	6	3	50	1.45
45681625--45681706	20	4.1	19	79	13	74	40	6	3	50	1.45
45681637--45681709	23	3.3	23	75	21	93	36	5	4	53	1.43
45681632--45681720	42	2.1	42	97	0	169	35	6	4	52	1.48
45681637--45681716	19	4.0	20	76	13	83	36	7	5	51	1.52
45682969--45683018	17	2.8	18	75	9	57	36	0	0	64	0.94
45683499--45683523	11	2.3	11	100	0	50	84	0	0	16	0.63
45684485--45684587	51	2.0	50	96	1	188	28	19	16	35	1.93
45685359--45685417	26	2.3	25	82	5	64	64	5	5	25	1.35
45693394--45693470	14	5.0	15	71	20	52	42	14	9	33	1.77
45693410--45693449	20	2.0	20	90	0	62	50	12	10	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45693398--45693464	34	1.9	35	90	3	109	46	13	8	31	1.74
45694008--45694036	5	5.8	5	100	0	58	37	20	20	20	1.94
45696705--45696729	8	3.1	8	100	0	50	52	0	0	48	1.00
45697107--45697131	8	3.1	8	100	0	50	52	0	0	48	1.00
45696487--45697290	402	2.0	402	99	0	1583	39	12	12	35	1.81
45698576--45698732	82	1.9	81	91	5	255	47	3	12	36	1.59
45701057--45701092	18	2.0	18	100	0	72	16	27	38	16	1.90
45703378--45703434	30	1.9	30	82	7	71	50	3	7	38	1.46
45704940--45705005	30	2.1	32	86	5	91	54	6	10	28	1.58
45706023--45706053	2	15.5	2	100	0	62	48	0	0	51	1.00
45723213--45723260	23	2.1	23	84	0	60	16	6	12	64	1.46
45734034--45734077	20	2.2	20	88	12	63	68	2	2	27	1.14
45735182--45735328	73	2.0	74	98	1	287	44	8	4	42	1.53
45738140--45738174	18	2.0	18	88	5	54	65	0	2	31	1.07
45739344--45739370	13	2.1	13	100	0	54	14	7	22	55	1.64
45740299--45740339	18	2.3	18	91	0	64	70	9	12	7	1.33
45754369--45754558	51	3.8	51	77	5	190	23	16	28	31	1.96
45754367--45754499	49	2.7	49	82	4	160	21	15	30	32	1.95
45754373--45754575	102	2.0	100	81	5	239	25	17	26	31	1.97
45754655--45754698	23	1.9	22	82	17	54	38	0	25	36	1.56
45757241--45757417	88	2.0	89	93	1	302	28	25	16	29	1.97
45774152--45774247	42	2.3	42	85	3	131	38	13	27	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45794544--45794585	21	2.0	21	90	0	66	16	28	28	26	1.97
45811592--45811665	31	2.3	33	79	11	82	40	10	13	35	1.80
45821276--45821325	7	7.1	7	100	0	100	16	14	14	56	1.69
45821638--45821799	81	2.0	81	97	2	308	57	8	4	29	1.50
45843099--45843178	42	1.9	42	92	5	135	42	7	5	45	1.54
45844826--45844853	12	2.3	12	100	0	56	14	42	14	28	1.84
45849781--45849820	20	1.9	22	90	10	66	47	0	0	52	1.00
45850684--45850722	16	2.4	16	87	8	53	48	2	25	23	1.63
45858580--45858620	19	2.2	19	86	4	57	19	12	9	58	1.61
45870636--45870678	21	2.0	21	82	8	52	62	11	11	13	1.54
45872411--45872554	33	4.5	32	75	15	120	41	11	2	45	1.51
45875405--45875441	18	2.2	18	85	9	51	40	0	2	56	1.13
45891184--45891209	13	2.0	13	100	0	52	69	0	23	7	1.14
45893350--45893457	36	3.0	36	93	0	189	35	25	11	28	1.90
45893133--45893654	285	1.8	285	88	1	805	29	26	13	30	1.94
45896569--45896606	20	1.9	20	84	10	51	36	5	0	57	1.21
45897274--45897344	35	2.0	35	100	0	142	25	2	25	46	1.66
45903015--45903039	7	3.6	7	100	0	50	56	0	0	44	0.99
45905245--45905269	8	3.1	8	100	0	50	28	0	0	72	0.86
45907404--45907967	281	2.0	282	99	0	1121	24	10	14	51	1.73
45927640--45927681	20	2.0	21	86	13	61	47	14	0	38	1.44
45931899--45931924	3	8.7	3	100	0	52	0	0	30	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45934813--45934847	18	1.9	18	94	0	61	25	8	14	51	1.70
45939460--45939501	20	2.2	20	82	4	50	59	11	11	16	1.61
45942389--45942424	16	2.2	16	100	0	72	16	5	13	63	1.47
45951266--45951303	15	2.4	16	91	4	60	21	5	10	63	1.46
45963162--45963199	15	2.4	16	91	4	60	21	5	10	63	1.46
45963883--45963925	23	1.9	23	90	4	70	13	11	2	72	1.22
45965838--45965873	7	5.1	7	93	0	54	72	0	5	22	1.05
45966747--45966804	17	3.1	17	75	18	53	48	6	0	44	1.29
45972682--45972714	15	2.2	15	100	0	66	30	0	30	39	1.57
45977869--45977917	25	2.0	24	84	4	62	32	2	8	57	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145