genome.fa.s13.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  68  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23234582--23234680	28	3.6	27	78	9	110	32	12	27	28	1.92
23235668--23236104	47	9.3	47	89	2	621	27	12	15	44	1.82
23241107--23241132	12	2.2	12	100	0	52	19	15	50	15	1.79
23254940--23255125	92	2.0	93	98	1	365	31	9	9	48	1.68
23255096--23255125	2	14.5	2	93	6	51	46	3	0	50	1.18
23256872--23256933	30	2.1	30	100	0	124	43	6	19	30	1.76
23257455--23257896	126	3.5	126	95	0	782	32	18	22	27	1.97
23258949--23258992	21	2.1	21	100	0	88	22	0	34	43	1.54
23263343--23263390	21	2.3	21	82	7	62	8	16	37	37	1.79
23263631--23263673	18	2.4	18	88	0	59	44	9	27	18	1.80
23266231--23266303	23	3.2	23	96	0	128	23	17	27	31	1.97
23266433--23266505	38	1.9	37	86	8	103	45	1	21	31	1.61
23267337--23267362	2	13.0	2	100	0	52	0	0	50	50	1.00
23269474--23269537	11	5.9	11	88	1	76	46	1	29	21	1.61
23269474--23269537	22	3.0	22	86	2	85	46	1	29	21	1.61
23269474--23269538	33	2.0	31	85	5	85	46	1	29	23	1.61
23272776--23272802	7	3.9	7	100	0	54	40	0	0	59	0.98
23275580--23276111	265	2.0	265	99	0	1055	30	19	13	36	1.90
23276799--23276908	58	1.9	58	86	1	159	31	28	24	15	1.95
23279316--23279796	114	4.2	111	73	10	382	30	16	24	28	1.96
23280675--23280727	21	2.5	21	72	9	54	13	0	35	50	1.41
23284444--23284512	25	2.7	24	82	10	75	42	2	0	55	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23287190--23287219	15	2.0	15	93	0	51	33	10	6	50	1.62
23291958--23292053	43	2.2	43	90	0	156	32	29	19	18	1.96
23291896--23292053	86	1.8	86	82	5	203	32	28	18	20	1.96
23298651--23299137	94	5.1	93	82	13	557	31	13	23	31	1.94
23298641--23299137	188	2.6	188	97	0	913	31	14	23	30	1.94
23301547--23301571	13	1.9	13	100	0	50	36	0	0	64	0.94
23303032--23303072	20	2.0	20	100	0	82	65	4	14	14	1.42
23303786--23303821	16	2.2	16	100	0	72	5	27	44	22	1.75
23305913--23305947	17	2.1	17	100	0	70	31	11	11	45	1.76
23325737--23325775	7	5.6	7	85	8	53	12	0	2	84	0.72
23328575--23328748	91	1.9	91	85	4	244	37	19	8	33	1.82
23331193--23331250	17	3.2	17	77	13	62	32	3	0	63	1.11
23331193--23331250	20	3.2	18	79	13	66	32	3	0	63	1.11
23331286--23331459	91	1.9	91	82	5	219	31	8	21	38	1.83
23334420--23334452	17	2.0	17	88	5	50	0	30	6	63	1.18
23334825--23334878	16	3.4	16	77	7	56	51	0	29	18	1.46
23348837--23348905	30	2.3	30	90	5	104	50	17	8	23	1.73
23350058--23350095	19	1.9	19	89	5	58	28	21	0	50	1.49
23350605--23350671	7	8.9	7	75	15	62	37	2	1	58	1.23
23350683--23350757	30	2.5	29	79	10	80	46	4	14	34	1.63
23359519--23359558	19	2.0	20	86	13	57	47	2	0	50	1.14
23359959--23359996	8	4.6	8	93	6	67	23	0	0	76	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23359959--23359996	17	2.3	17	95	4	69	23	0	0	76	0.79
23360096--23360193	31	3.2	31	86	2	128	36	2	1	60	1.15
23360104--23360190	11	8.4	11	70	23	64	37	2	1	58	1.18
23365734--23365816	20	4.2	20	72	18	57	34	1	6	57	1.31
23365730--23365778	21	2.3	21	85	3	62	34	2	4	59	1.28
23365766--23365816	20	2.6	19	90	6	84	33	0	7	58	1.27
23365781--23365858	12	7.3	11	77	20	85	34	0	7	57	1.27
23365840--23365869	9	3.3	9	95	0	51	36	0	6	56	1.26
23365800--23365882	35	2.4	34	84	11	98	37	0	6	56	1.24
23366010--23366058	21	2.3	21	85	3	62	34	2	4	59	1.28
23366046--23366113	20	3.3	20	89	8	93	32	0	7	60	1.24
23366061--23366138	12	7.3	11	77	20	85	34	0	7	57	1.27
23366120--23366149	9	3.3	9	95	0	51	36	0	6	56	1.26
23366080--23366162	35	2.4	34	84	11	98	37	0	6	56	1.24
23365718--23366278	280	2.0	281	99	0	1115	37	8	8	45	1.65
23367717--23367742	4	6.5	4	100	0	52	26	23	0	50	1.50
23368535--23368563	2	14.5	2	100	0	58	48	0	0	51	1.00
23368783--23368807	11	2.3	11	100	0	50	0	20	16	64	1.30
23371080--23371130	22	2.3	22	86	0	66	27	3	1	66	1.20
23371098--23371143	21	2.2	20	84	3	56	28	2	0	69	1.00
23371276--23371303	11	2.5	11	100	0	56	60	0	0	39	0.97
23379146--23379178	13	2.5	13	90	0	57	48	0	6	45	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23379146--23379189	13	3.4	13	84	9	54	52	4	6	36	1.49
23390788--23390851	28	2.3	27	81	2	74	43	6	9	40	1.62
23392594--23392649	21	2.6	22	81	13	64	42	7	1	48	1.41
23402139--23402172	17	2.0	17	88	0	50	52	0	2	44	1.16
23402174--23402227	22	2.5	22	77	17	58	46	0	7	46	1.31
23403607--23403666	31	1.9	32	89	3	95	46	6	10	36	1.64
23404452--23404516	31	2.1	31	82	0	76	64	4	3	27	1.28
23410077--23410132	3	18.7	3	92	0	94	66	1	1	30	1.12
23410934--23410967	14	2.2	16	90	10	54	41	2	5	50	1.42
23413628--23414276	324	2.0	325	99	0	1291	39	9	9	41	1.70
23417538--23417575	19	2.0	20	89	5	60	13	5	7	73	1.22
23418353--23418401	25	2.0	24	88	4	71	44	2	2	51	1.24
23418381--23418450	19	3.7	20	81	7	74	34	0	8	57	1.29
23418414--23418450	20	1.9	20	94	5	67	29	0	10	59	1.31
23423898--23423937	21	1.9	21	85	10	55	60	5	2	32	1.32
23428887--23428938	27	1.9	27	88	7	79	26	34	11	26	1.91
23436547--23436886	89	3.7	89	88	3	421	34	20	10	34	1.88
23437069--23437154	19	4.8	17	71	19	52	65	0	2	32	1.06
23437069--23437201	9	14.6	9	68	16	60	63	2	3	30	1.21
23445036--23445068	15	2.2	15	94	0	57	42	0	0	57	0.98
23452264--23452320	29	2.0	29	100	0	114	45	17	7	29	1.75
23461246--23461279	3	11.3	3	100	0	68	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23462787--23462829	13	3.2	13	83	6	59	44	30	0	25	1.55
23465787--23465859	27	2.7	26	73	10	67	50	1	2	45	1.24
23467774--23467814	16	2.6	16	96	0	73	41	4	34	19	1.73
23467815--23467902	17	5.0	17	71	13	70	53	1	2	43	1.20
23467816--23467899	26	3.2	25	70	26	75	52	1	2	44	1.21
23470268--23470323	29	1.9	29	85	7	78	42	7	5	44	1.54
23470269--23470330	29	2.1	29	82	5	72	41	8	8	41	1.64
23471544--23471583	21	1.9	21	89	0	62	15	7	2	75	1.14
23472310--23472338	3	10.0	3	92	7	51	68	0	0	31	0.89
23481599--23481732	41	3.3	41	88	2	182	25	20	13	41	1.88
23486753--23486968	42	5.1	42	72	11	163	21	16	17	44	1.87
23487112--23487162	19	2.4	22	75	25	63	41	13	17	27	1.87
23487118--23487157	19	2.1	19	100	0	80	42	15	17	25	1.88
23505218--23505266	23	2.2	22	82	7	64	57	4	0	38	1.18
23506673--23506702	3	10.0	3	92	0	51	63	3	0	33	1.11
23526579--23526643	33	1.9	34	84	9	89	29	3	13	53	1.55
23533160--23533198	17	2.2	18	86	4	53	58	5	7	28	1.47
23535013--23535102	42	2.1	42	79	4	101	25	26	21	26	1.99
23537241--23537294	3	19.0	3	74	11	51	64	3	1	29	1.21
23539009--23539039	14	2.3	13	94	5	53	38	9	16	35	1.81
23541326--23541369	6	6.7	7	92	7	67	72	0	0	27	0.85
23541324--23541369	14	3.5	13	88	8	67	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23546879--23546938	27	2.2	27	91	5	95	21	20	23	35	1.96
23548370--23548429	27	2.2	27	91	5	95	21	20	23	35	1.96
23550310--23550716	43	9.4	43	78	6	358	23	28	20	28	1.99
23550332--23550650	173	1.8	172	82	6	412	23	29	20	26	1.99
23550332--23550713	130	2.9	128	79	7	369	23	28	20	27	1.99
23550332--23550712	173	2.2	171	80	7	405	23	28	20	27	1.99
23550799--23550828	14	2.1	14	100	0	60	53	33	0	13	1.40
23551034--23551073	21	1.9	21	89	0	62	7	42	12	37	1.71
23557440--23557477	14	2.7	14	100	0	76	44	0	5	50	1.24
23561375--23561720	113	3.0	113	92	0	566	27	21	23	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145