genome.fa.s13.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  100  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33956930--33956968	16	2.4	16	82	0	51	35	10	2	51	1.50
33959537--33959605	18	3.9	17	72	14	59	65	1	4	28	1.21
33963842--33963866	7	3.6	7	100	0	50	44	0	0	56	0.99
33972254--33972438	91	2.0	92	98	1	363	50	6	6	36	1.54
33981830--33981871	22	1.9	22	90	9	68	76	4	0	19	0.96
33982346--33982546	41	4.9	40	80	5	224	35	25	19	18	1.95
33985346--33985417	13	5.5	13	72	6	56	25	15	19	40	1.90
33985346--33985417	26	2.8	27	77	8	78	25	15	19	40	1.90
33990049--33990079	9	3.4	9	90	0	53	25	12	22	38	1.90
33992755--33992800	16	2.9	16	84	9	60	54	0	4	41	1.20
33995515--33995558	21	2.1	21	86	0	61	29	18	20	31	1.96
33997952--33997976	13	1.9	13	100	0	50	36	0	0	64	0.94
33999266--33999320	23	2.4	23	93	0	92	21	20	20	38	1.94
33999302--33999351	21	2.3	22	79	6	57	16	24	26	34	1.95
33999310--33999362	21	2.5	21	75	0	61	20	26	22	30	1.98
33999614--33999661	24	2.0	24	87	0	69	45	2	18	33	1.61
33999970--34000017	24	2.0	24	87	0	69	45	2	18	33	1.61
34000676--34000715	16	2.4	17	87	4	55	55	0	0	45	0.99
34000685--34000718	10	3.5	10	92	4	52	52	0	0	47	1.00
34001608--34001647	16	2.4	17	87	4	55	55	0	0	45	0.99
34001617--34001650	10	3.5	10	92	4	52	52	0	0	47	1.00
34015052--34015142	44	2.1	44	87	4	130	45	10	13	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34017036--34017121	44	2.0	44	92	0	145	47	9	12	30	1.73
34030875--34030935	29	2.1	29	81	9	70	49	1	6	42	1.38
34040732--34040803	36	2.0	36	83	5	92	27	6	30	34	1.83
34042640--34042697	29	2.0	29	100	0	116	20	13	13	51	1.75
34045237--34045381	27	5.4	27	83	0	191	17	17	22	42	1.89
34051297--34051333	17	2.2	17	90	0	56	43	2	0	54	1.14
34055272--34055332	28	2.2	28	93	0	104	26	26	26	21	1.99
34055278--34055367	28	2.9	31	82	11	89	24	23	26	25	2.00
34055712--34055891	27	6.7	26	86	6	200	15	16	23	45	1.85
34055712--34055891	54	3.3	54	86	3	254	15	16	23	45	1.85
34055726--34055882	81	1.9	81	89	2	244	14	15	22	47	1.82
34056566--34056608	5	8.4	5	82	12	52	60	0	37	2	1.10
34059614--34059708	40	2.5	38	77	5	93	33	26	13	26	1.94
34060612--34060647	13	2.8	13	88	12	56	0	16	5	77	0.94
34063799--34063838	2	20.5	2	89	5	64	47	2	0	50	1.14
34071214--34071264	6	8.5	6	100	0	102	31	0	17	50	1.46
34073743--34073787	20	2.3	20	96	3	83	31	35	17	15	1.92
34077505--34077564	22	2.6	25	82	12	67	40	5	1	53	1.33
34077665--34077711	18	2.5	20	72	10	53	36	0	6	57	1.24
34080055--34080246	105	1.8	105	82	4	244	52	10	14	22	1.72
34081172--34081328	79	2.0	79	91	0	251	29	12	17	40	1.86
34081799--34081885	25	3.5	25	84	3	104	12	22	14	49	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34081864--34081907	15	2.9	15	76	10	54	9	22	13	54	1.67
34081843--34081892	20	2.5	20	80	0	64	12	24	14	50	1.76
34082770--34082800	14	2.2	14	100	0	62	61	0	0	38	0.96
34083295--34083333	17	2.4	16	87	8	60	35	0	5	58	1.20
34083684--34083716	17	2.0	17	88	5	50	39	0	0	60	0.97
34084166--34084289	59	2.1	58	80	1	131	39	13	11	35	1.81
34084252--34084329	30	2.6	31	86	8	99	35	19	7	37	1.80
34091063--34091096	13	2.7	13	90	4	52	2	14	5	76	1.09
34091049--34091096	17	2.9	16	78	12	53	4	16	6	72	1.20
34092140--34092299	27	5.9	27	85	0	194	43	18	19	18	1.89
34092140--34092297	54	2.9	54	88	0	226	43	18	18	18	1.89
34092479--34092581	26	4.0	26	80	0	125	15	20	26	37	1.92
34092715--34092804	30	3.0	30	85	0	117	22	27	22	27	1.99
34095189--34095304	43	2.7	42	81	10	144	26	28	19	25	1.99
34096182--34096238	28	2.0	28	90	6	89	38	5	0	56	1.22
34097423--34097462	18	2.2	18	86	8	55	25	17	30	27	1.97
34099085--34099228	21	7.0	21	83	3	152	14	23	18	43	1.86
34099139--34099191	19	2.8	19	94	0	88	15	22	15	47	1.82
34105060--34105100	18	2.3	19	80	16	52	65	12	0	21	1.25
34105181--34105240	30	2.0	30	90	0	93	58	13	3	25	1.50
34107242--34107567	27	12.1	27	84	7	272	16	16	20	45	1.85
34107241--34107567	54	6.1	53	84	4	388	17	16	20	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34107242--34107567	81	4.0	81	84	6	383	16	16	20	45	1.85
34110739--34111096	177	2.0	180	92	3	598	32	28	17	22	1.96
34113920--34113955	17	2.1	17	89	0	54	13	30	11	44	1.79
34114771--34114827	28	2.0	28	86	6	80	28	24	22	24	2.00
34115158--34115615	27	17.3	27	82	4	511	16	18	20	44	1.86
34115374--34115597	74	2.9	74	81	7	245	14	20	20	44	1.87
34115448--34115606	80	2.0	81	86	6	225	15	18	20	45	1.85
34134162--34134245	24	3.5	24	67	12	73	11	8	52	27	1.66
34134307--34134805	36	13.7	36	67	12	241	19	6	53	20	1.66
34134331--34134399	12	5.8	12	74	6	59	10	8	56	24	1.60
34134265--34134995	114	6.7	112	80	10	698	16	6	54	21	1.65
34134343--34134452	24	4.6	24	70	4	78	16	5	54	23	1.63
34134302--34134995	216	3.2	218	88	8	971	17	6	54	21	1.64
34134691--34134738	12	4.0	12	80	0	51	6	12	58	22	1.57
34134811--34134959	24	6.2	24	71	6	104	9	6	59	25	1.52
34134832--34135043	48	4.4	48	75	4	212	14	4	57	23	1.57
34134403--34134995	36	16.5	36	67	12	247	17	5	55	21	1.63
34134880--34134923	18	2.4	18	88	0	61	6	0	65	27	1.17
34134883--34134960	30	2.6	30	78	8	88	6	5	61	26	1.41
34134826--34135019	96	2.0	96	83	2	237	13	5	57	23	1.58
34135038--34135092	15	3.7	15	73	9	58	9	7	58	25	1.55
34135027--34135097	30	2.4	30	76	4	72	9	5	57	26	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34138220--34138260	13	3.1	13	82	6	55	34	0	4	60	1.18
34140464--34140530	24	2.8	24	80	8	75	58	4	4	32	1.38
34142186--34142562	44	8.5	44	75	6	246	27	24	19	28	1.98
34142186--34142513	132	2.5	133	81	3	374	27	25	19	28	1.99
34145210--34145239	15	2.0	15	93	0	51	43	0	0	56	0.99
34145196--34145237	18	2.3	18	95	4	75	45	0	0	54	0.99
34148114--34148149	11	3.2	11	88	4	54	0	19	0	80	0.71
34153178--34153423	122	2.0	123	96	1	458	56	4	9	28	1.51
34153200--34153392	63	3.1	63	68	26	194	56	4	8	29	1.50
34153428--34153494	24	2.8	24	80	8	75	58	4	4	32	1.38
34153404--34153500	24	4.1	23	74	13	74	58	3	4	34	1.32
34154893--34154924	8	4.2	8	84	15	50	53	9	0	37	1.34
34156498--34156529	8	4.2	8	84	15	50	53	9	0	37	1.34
34157434--34157471	7	5.6	7	87	6	60	50	0	0	50	1.00
34157434--34157471	13	2.8	13	92	4	58	50	0	0	50	1.00
34157412--34157471	15	4.2	14	79	8	59	55	1	0	43	1.10
34157435--34157478	13	3.1	14	83	9	54	52	0	2	45	1.13
34157442--34157489	20	2.4	20	85	0	60	50	4	2	43	1.33
34158605--34158664	27	2.2	28	87	3	86	45	1	0	53	1.10
34162109--34162177	24	2.9	24	78	8	70	50	4	5	39	1.46
34162263--34162304	9	4.8	9	82	14	52	59	2	7	30	1.37
34162792--34162840	13	3.9	12	86	7	62	83	2	10	4	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34162798--34162842	12	4.0	12	80	13	60	84	0	8	6	0.78
34168568--34168613	15	2.9	17	81	15	55	36	26	6	30	1.82
34169573--34169619	9	5.6	9	75	14	55	17	0	4	78	0.90
34174430--34174456	8	3.4	8	100	0	54	0	11	33	55	1.35
34176816--34176890	12	6.2	12	79	0	78	12	0	53	34	1.38
34176802--34176913	48	2.3	48	95	0	197	16	0	50	33	1.45
34176882--34176936	27	2.0	27	82	0	65	23	1	50	23	1.58
34176908--34177020	42	2.7	42	88	0	163	23	8	52	15	1.70
34189034--34189066	14	2.4	14	90	10	50	48	3	0	48	1.17
34199027--34199059	1	33.0	1	93	0	57	0	0	3	96	0.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145