genome.fa.s13.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  15  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5726575--5727042	88	5.3	88	92	0	738	23	24	24	27	2.00
5728264--5728404	1	141.0	1	65	0	57	0	16	1	82	0.75
5728264--5728390	13	9.3	14	73	19	83	0	18	0	81	0.68
5728273--5728391	29	4.3	28	74	19	108	0	18	0	81	0.69
5728264--5728404	9	16.5	8	76	16	99	0	16	1	82	0.75
5728259--5728392	50	2.7	48	78	14	128	0	18	0	80	0.76
5728264--5728404	63	2.2	67	83	8	177	0	16	1	82	0.75
5728271--5728404	11	11.6	11	78	11	110	0	16	1	82	0.75
5731514--5731581	3	22.7	3	74	14	52	69	1	2	26	1.12
5731514--5731600	17	4.9	17	71	16	61	70	1	3	25	1.10
5731521--5731610	8	11.2	8	73	24	66	71	2	2	24	1.09
5731531--5731608	29	2.8	29	83	12	101	71	2	2	23	1.10
5733685--5733920	118	2.0	118	98	0	454	34	9	4	51	1.54
5734414--5734577	42	3.9	42	90	0	274	32	22	20	24	1.98
5745472--5745688	113	1.9	114	85	6	307	25	24	24	25	2.00
5745489--5745727	112	2.1	114	82	4	288	26	24	24	25	2.00
5755414--5755444	16	1.9	16	100	0	62	32	6	6	54	1.51
5758745--5758775	16	1.9	16	100	0	62	32	6	6	54	1.51
5761523--5761562	20	2.0	20	95	0	71	35	27	10	27	1.89
5762473--5762519	20	2.2	21	85	11	60	44	2	0	53	1.12
5764200--5764232	17	1.9	17	88	11	50	48	3	3	45	1.33
5765496--5765529	14	2.5	13	90	4	50	82	5	8	2	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5765783--5765877	40	2.4	40	82	3	120	36	25	20	17	1.94
5765968--5766014	14	3.4	14	84	0	58	27	2	21	48	1.61
5766061--5766105	21	2.2	20	84	4	54	17	0	31	51	1.46
5766066--5766106	14	2.9	14	88	0	64	14	0	34	51	1.43
5766289--5766427	14	9.8	14	70	9	77	20	0	36	42	1.57
5766346--5766402	7	7.9	7	76	7	51	19	1	47	31	1.60
5766333--5766403	29	2.4	29	85	0	97	21	1	42	35	1.62
5766398--5766486	44	2.0	45	97	2	171	31	4	22	41	1.74
5775118--5775150	17	1.9	17	88	11	50	48	3	3	45	1.33
5776414--5776447	14	2.5	13	90	4	50	82	5	8	2	0.93
5776701--5776795	40	2.4	40	82	3	120	36	25	20	17	1.94
5776886--5776932	14	3.4	14	84	0	58	27	2	21	48	1.61
5776979--5777023	21	2.2	20	84	4	54	17	0	31	51	1.46
5776984--5777024	14	2.9	14	88	0	64	14	0	34	51	1.43
5777207--5777345	14	9.8	14	70	9	77	20	0	36	42	1.57
5777264--5777320	7	7.9	7	76	7	51	19	1	47	31	1.60
5777251--5777321	29	2.4	29	85	0	97	21	1	42	35	1.62
5780531--5780789	43	6.0	43	71	8	177	27	17	21	33	1.96
5787737--5787805	36	1.9	36	84	0	93	23	20	24	31	1.98
5790161--5790327	39	4.3	39	83	2	183	31	14	32	20	1.93
5790213--5790315	19	5.3	19	71	9	82	32	18	33	16	1.93
5790221--5790324	20	5.3	20	75	9	106	29	17	36	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5790183--5790326	78	1.8	78	87	0	216	29	15	35	19	1.92
5794658--5794703	22	2.1	22	84	8	58	10	0	17	71	1.13
5801401--5801435	17	2.0	18	88	5	54	25	28	34	11	1.91
5818911--5818965	22	2.5	23	88	5	71	47	14	12	25	1.80
5818923--5818968	22	2.1	22	100	0	92	45	13	15	26	1.82
5819417--5820179	27	28.4	26	82	6	787	20	18	20	40	1.92
5823633--5823670	11	3.5	11	82	13	51	34	0	2	63	1.09
5823652--5823682	10	3.1	10	95	0	53	29	0	9	61	1.28
5824302--5824569	43	6.2	43	76	10	199	27	23	19	30	1.98
5824301--5824569	86	3.1	85	81	3	254	27	23	18	30	1.98
5824629--5824698	33	2.1	33	81	2	77	58	18	4	18	1.55
5827502--5827552	23	2.2	23	79	6	59	41	19	9	29	1.84
5838157--5838438	43	6.6	43	82	3	352	24	16	26	32	1.96
5838157--5838434	129	2.2	129	87	0	403	24	16	26	32	1.96
5846393--5846427	17	2.0	18	88	5	54	14	42	28	14	1.84
5847706--5847761	25	2.4	23	85	8	69	16	48	14	21	1.81
5847705--5847755	25	2.0	25	92	0	84	15	47	13	23	1.82
5852443--5852496	25	2.2	25	86	0	72	20	50	7	22	1.73
5856335--5856493	39	4.1	40	81	3	182	31	16	33	18	1.94
5856347--5856402	20	2.9	19	70	15	51	32	17	33	16	1.92
5856338--5856485	78	1.9	78	87	2	217	31	17	32	18	1.94
5865730--5865791	19	3.3	18	75	18	56	29	0	3	67	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5870094--5870123	14	2.1	14	93	0	51	53	16	0	30	1.44
5872565--5872838	138	2.0	138	90	1	433	33	19	17	28	1.95
5872595--5872868	138	2.0	137	80	6	306	37	18	19	24	1.94
5885851--5885888	17	2.2	17	100	0	76	42	10	18	28	1.83
5895258--5895301	21	2.1	21	100	0	88	18	4	18	59	1.55
5895318--5895360	21	2.0	21	82	8	52	37	0	6	55	1.27
5895577--5895668	44	2.1	44	82	11	109	35	25	6	32	1.81
5895651--5895689	16	2.5	16	95	4	71	28	30	7	33	1.85
5895828--5895895	23	2.9	23	80	2	82	27	8	17	45	1.78
5895832--5895911	23	3.4	23	81	5	81	31	7	17	43	1.77
5903649--5903836	4	47.2	4	93	3	326	49	26	0	23	1.54
5909997--5910147	75	2.0	76	97	1	286	45	6	22	25	1.77
5915976--5916446	235	2.0	236	99	0	935	38	10	10	40	1.75
5918573--5918633	28	2.2	28	94	5	106	27	8	21	42	1.81
5928812--5928946	55	2.5	51	79	12	146	29	16	11	42	1.82
5928834--5928954	55	2.2	56	89	1	190	28	15	9	46	1.78
5932506--5932530	13	1.9	13	100	0	50	24	4	0	72	1.02
5944974--5945016	6	7.0	6	86	5	50	16	6	0	76	0.99
5944974--5945016	12	3.5	12	90	3	59	16	6	0	76	0.99
5944976--5945016	18	2.2	19	91	4	66	17	7	0	75	1.02
5946594--5946619	7	3.7	7	100	0	52	38	0	0	61	0.96
5946595--5946639	14	3.1	14	87	6	54	33	6	0	60	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5946983--5947038	21	2.7	21	88	0	85	26	8	35	28	1.87
5947652--5947879	113	2.0	113	99	0	447	35	18	14	30	1.91
5951688--5951722	2	18.5	2	88	11	56	51	0	0	48	1.00
5952442--5952474	17	1.9	17	93	0	57	42	6	24	27	1.78
5955931--5955963	17	1.9	17	93	0	57	45	6	24	24	1.75
5957699--5957753	27	2.0	27	82	10	67	34	0	1	63	1.05
5957742--5957785	22	2.0	23	90	4	72	34	0	0	65	0.93
5958092--5958163	35	2.1	35	97	0	135	51	5	11	31	1.60
5959034--5959061	2	14.0	2	100	0	56	50	0	0	50	1.00
5961649--5961694	24	2.0	23	83	12	58	8	2	32	56	1.42
5962580--5962700	42	2.8	43	82	6	147	23	16	27	32	1.96
5962588--5962700	43	2.7	42	81	12	124	24	16	27	30	1.97
5970746--5970787	22	2.0	22	90	4	68	59	2	4	33	1.31
5970795--5970845	22	2.5	19	73	20	50	37	7	1	52	1.42
5976505--5976610	54	2.0	54	90	3	169	16	13	50	18	1.77
5980422--5980456	4	8.8	4	100	0	70	74	0	25	0	0.82
5989072--5989101	12	2.5	12	94	0	51	53	0	23	23	1.46
5991458--5991505	23	2.0	24	88	4	71	22	4	6	66	1.32
5993982--5994044	30	2.1	30	87	0	90	58	12	1	26	1.43
5997050--5997074	13	1.9	13	100	0	50	36	24	8	32	1.84
5998726--5998794	34	2.0	34	97	0	129	53	2	36	7	1.44
6004787--6004834	17	2.8	17	87	6	62	47	2	2	47	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6005017--6005149	40	3.2	40	75	14	149	48	3	9	39	1.50
6004990--6005149	87	1.8	87	98	0	311	46	3	10	40	1.53
6004990--6005129	47	3.1	47	76	14	186	45	3	10	40	1.56
6005769--6005867	31	3.2	31	74	7	85	37	14	10	38	1.79
6017309--6017429	20	6.5	17	71	22	84	61	0	2	34	1.15
6017289--6017354	29	2.3	30	80	17	77	59	0	3	37	1.13
6017282--6017430	48	3.1	46	77	14	151	62	0	3	33	1.17
6017274--6017430	9	16.6	9	69	18	79	62	0	3	33	1.16
6017356--6017429	28	2.6	28	80	15	89	63	1	4	31	1.21
6017291--6017430	9	14.5	10	73	19	95	61	0	3	34	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145