genome.fa.s13.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  113  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37837724--37837966	126	1.9	126	84	0	324	32	22	20	25	1.98
37850143--37850194	25	2.0	26	85	3	70	46	21	5	26	1.74
37850577--37850793	114	1.9	114	80	3	258	30	22	22	24	1.99
37850955--37851632	115	5.9	115	93	0	1139	26	25	15	32	1.96
37850955--37851632	343	2.0	343	93	0	1151	26	25	15	32	1.96
37852423--37852466	23	1.9	23	81	9	54	52	0	4	43	1.22
37859746--37859777	15	2.1	15	94	0	55	87	3	0	9	0.64
37861162--37861420	45	5.8	45	82	3	263	28	24	23	23	2.00
37861144--37861412	89	3.0	89	83	1	315	29	23	23	23	1.99
37861427--37862255	131	6.3	131	89	0	1255	30	19	23	26	1.98
37862291--37862435	44	3.3	44	78	1	121	33	21	20	24	1.97
37867154--37867188	13	2.6	13	90	4	52	34	8	2	54	1.46
37871096--37871139	20	2.1	22	83	8	56	56	13	0	29	1.38
37878885--37878930	24	1.9	24	90	0	74	47	4	6	41	1.49
37880905--37880950	24	1.9	24	90	0	74	47	4	6	41	1.49
37881153--37881199	24	2.0	24	95	0	85	36	2	6	55	1.37
37883040--37883078	16	2.4	16	86	0	51	53	5	7	33	1.51
37883020--37883079	18	3.5	17	75	9	50	53	5	8	33	1.53
37883349--37883381	10	3.3	10	91	0	57	81	3	0	15	0.80
37884110--37884145	19	2.0	18	89	10	56	77	13	8	0	0.98
37884216--37884263	20	2.4	20	96	0	87	20	45	27	6	1.75
37884293--37884325	17	1.9	17	93	0	57	69	0	30	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37884321--37884355	18	1.9	18	94	0	61	37	28	34	0	1.58
37884785--37884830	17	2.6	17	83	12	58	30	15	8	45	1.76
37884922--37884971	17	2.9	17	80	8	57	32	12	8	48	1.69
37885020--37885096	17	4.3	18	73	8	68	36	9	7	46	1.64
37884922--37885149	18	12.3	18	68	18	112	32	11	9	46	1.72
37885172--37885272	19	5.3	19	67	11	62	37	10	9	41	1.74
37885174--37885291	17	6.4	17	68	14	65	34	11	9	44	1.73
37885235--37885307	17	4.3	16	77	16	67	32	12	10	43	1.77
37885243--37885307	18	3.8	17	82	10	78	29	13	10	46	1.77
37897530--37897559	15	1.9	16	93	6	53	56	0	43	0	0.99
37897560--37897619	21	2.9	21	81	16	63	81	1	8	8	0.93
37897562--37897619	27	2.2	26	78	9	64	82	1	6	8	0.90
37897738--37897773	19	2.0	18	89	10	56	77	13	8	0	0.98
37897898--37897930	17	1.9	17	93	0	57	69	0	30	0	0.88
37898217--37898254	20	1.9	20	88	0	58	36	13	7	42	1.73
37898371--37898416	17	2.6	17	83	12	58	30	15	8	45	1.76
37898506--37898930	17	22.9	18	66	19	85	32	11	10	45	1.74
37898552--37898616	35	1.9	33	87	6	94	32	7	9	50	1.63
37898638--37898692	18	3.2	17	73	19	51	32	14	9	43	1.77
37898578--37898700	38	3.2	37	71	19	101	34	12	8	44	1.71
37898718--37899005	17	16.1	17	68	14	116	32	13	10	43	1.77
37898769--37898920	70	2.2	69	85	4	209	30	12	12	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37898900--37898938	18	2.2	18	85	0	51	41	12	10	35	1.77
37902710--37902759	9	5.7	9	79	11	50	70	0	6	24	1.10
37902727--37902790	21	3.2	19	76	12	56	62	0	4	32	1.16
37910197--37910631	144	3.0	143	76	9	470	33	17	20	28	1.95
37915445--37915485	21	2.0	21	85	0	55	58	9	4	26	1.50
37916295--37916438	10	14.3	10	70	21	72	70	0	28	0	0.92
37916285--37916469	38	4.9	38	74	14	159	68	0	31	0	0.94
37916295--37916439	44	3.3	43	86	4	168	70	0	28	0	0.92
37916295--37916466	10	18.0	10	66	15	69	69	0	30	0	0.93
37916799--37917248	159	2.8	156	73	15	513	51	7	10	30	1.63
37916799--37917333	161	3.3	161	72	16	516	52	7	9	31	1.61
37917333--37917401	35	2.0	35	82	0	84	47	8	27	15	1.75
37922907--37923176	9	29.3	9	69	17	155	62	3	0	32	1.18
37922913--37923176	10	27.4	10	66	20	93	63	3	0	32	1.18
37922907--37923176	130	2.1	129	79	10	284	62	3	0	32	1.18
37923590--37923621	16	2.1	16	94	5	57	65	6	0	28	1.16
37923740--37923819	19	4.3	18	71	17	65	30	0	6	63	1.19
37923733--37923801	10	7.4	9	72	16	52	30	0	4	65	1.12
37931580--37931625	20	2.4	20	82	7	51	63	4	4	28	1.33
37931632--37931822	41	4.7	41	92	2	303	29	30	23	16	1.96
37931857--37932050	98	2.0	98	100	0	388	31	16	11	40	1.84
37937686--37937743	19	3.2	19	75	20	61	60	3	1	34	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37937692--37937753	10	6.4	10	77	3	56	62	3	1	32	1.20
37937633--37937751	17	6.7	17	69	17	55	61	4	2	31	1.28
37938589--37938649	19	3.4	19	68	20	51	31	0	3	65	1.09
37942262--37942313	25	2.0	25	82	10	61	48	1	3	46	1.31
37942533--37942668	8	15.4	9	69	16	56	60	4	3	31	1.34
37942828--37942877	22	2.3	22	85	0	73	64	6	0	30	1.18
37942890--37942938	19	2.5	20	74	9	57	59	0	0	40	0.98
37942893--37942928	18	2.0	18	89	10	56	55	0	0	44	0.99
37942820--37942967	10	15.1	10	65	18	53	62	2	0	35	1.10
37943500--37943587	20	4.4	19	67	17	54	28	2	6	62	1.33
37945020--37945094	19	3.8	19	87	6	114	36	9	17	37	1.82
37945021--37945083	21	3.1	21	90	4	103	36	9	15	38	1.81
37945033--37945117	19	4.0	22	77	14	72	36	7	17	38	1.77
37949295--37949350	14	4.0	14	77	11	53	73	0	26	0	0.84
37949293--37949351	25	2.3	27	83	13	81	72	0	27	0	0.84
37949624--37949977	104	3.5	100	84	8	427	28	0	15	55	1.45
37949956--37949993	15	2.5	15	83	8	51	34	0	5	60	1.19
37949954--37949989	17	2.2	16	90	9	56	30	0	5	63	1.17
37949636--37949975	98	3.3	103	84	7	453	29	0	15	54	1.46
37950925--37950957	2	16.5	2	100	0	66	51	0	0	48	1.00
37954213--37954350	43	3.5	40	75	22	130	34	27	15	21	1.94
37954256--37954383	33	3.6	33	75	20	132	35	27	17	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37954176--37954390	75	2.9	75	89	0	313	33	28	17	20	1.96
37955587--37955644	23	2.5	23	77	0	71	10	27	17	44	1.81
37956870--37957015	74	1.9	75	86	5	206	28	7	10	53	1.62
37962223--37962357	71	1.9	71	96	0	252	46	19	3	30	1.67
37962488--37962527	21	1.9	21	84	0	53	35	10	5	50	1.58
37962559--37962591	12	2.8	12	90	9	50	78	0	0	21	0.75
37962797--37962876	25	3.1	25	89	7	99	23	15	5	56	1.59
37962821--37962876	25	2.2	25	100	0	112	23	12	3	60	1.47
37964507--37964603	48	2.1	45	88	5	140	50	21	16	11	1.76
37965933--37966434	45	11.3	45	74	5	428	28	25	23	22	1.99
37965853--37966448	89	6.7	89	86	2	756	28	25	23	23	2.00
37966511--37967575	132	8.1	132	88	2	1298	30	19	23	26	1.98
37967749--37968161	50	8.3	49	75	3	340	33	23	20	23	1.97
37967748--37968375	200	3.2	200	79	5	589	32	21	20	24	1.97
37967749--37968188	100	4.4	100	90	1	598	33	22	20	23	1.97
37968699--37968736	18	2.0	20	90	10	62	76	5	0	18	0.97
37969872--37969902	15	2.1	15	93	0	53	29	0	6	64	1.18
37972522--37972585	20	3.3	19	86	8	76	40	1	1	56	1.18
37973540--37973568	6	4.8	6	100	0	58	34	0	17	48	1.47
37985587--37985628	21	2.0	21	85	0	57	23	21	7	47	1.75
37993849--37993888	21	1.9	21	84	0	53	22	7	30	40	1.81
37994186--37994216	15	2.1	15	100	0	62	25	6	35	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37995691--37995728	8	4.8	8	83	9	51	26	0	23	50	1.50
38001465--38001503	19	2.1	19	85	9	53	53	2	0	43	1.14
38009990--38010039	17	2.7	18	84	9	57	66	0	4	30	1.10
38010000--38010039	20	2.0	20	85	9	55	70	0	2	27	1.01
38010289--38010326	20	1.9	20	94	0	67	31	28	7	31	1.86
38011304--38011377	38	1.9	38	91	0	121	27	9	21	41	1.84
38012307--38012417	37	3.0	37	93	0	186	36	17	15	30	1.90
38014292--38014334	16	2.7	16	82	7	52	44	2	16	37	1.60
38015535--38015568	18	1.9	18	88	5	52	2	8	14	73	1.19
38026888--38026926	17	2.2	19	86	9	55	66	2	2	28	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145