genome.fa.s13.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  45  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16003276--16003720	50	8.9	49	74	7	205	24	20	23	32	1.98
16003276--16003818	100	5.4	99	88	2	511	24	20	22	32	1.98
16003446--16003805	50	7.2	50	84	3	467	25	20	21	32	1.97
16004026--16004352	44	7.4	45	68	14	191	24	24	23	27	2.00
16003928--16004388	88	5.2	88	91	1	701	25	24	23	26	2.00
16005573--16005646	15	5.0	15	75	17	66	13	16	0	70	1.17
16005582--16005626	8	5.6	8	86	7	65	11	15	0	73	1.10
16005582--16005647	9	7.6	9	75	11	50	12	15	0	72	1.12
16005589--16005648	18	3.3	18	78	17	63	11	15	0	73	1.10
16006453--16006562	42	2.6	41	80	8	116	10	11	5	71	1.28
16007031--16007083	1	53.0	1	76	0	52	1	9	0	88	0.58
16007031--16007077	11	4.2	11	86	13	69	0	10	0	89	0.49
16007037--16007067	14	2.2	14	100	0	62	0	6	0	93	0.35
16007031--16007083	23	2.4	23	87	6	74	1	9	0	88	0.58
16007031--16007082	12	4.4	12	80	9	63	1	9	0	88	0.59
16010731--16010795	3	21.7	3	73	6	51	64	4	3	27	1.28
16012224--16012282	25	2.3	27	82	11	70	37	1	3	57	1.25
16012348--16012438	45	2.0	47	91	4	150	45	7	2	45	1.44
16021795--16021835	19	2.2	19	86	8	57	51	0	2	46	1.14
16030687--16030741	5	11.0	5	94	5	94	0	58	0	41	0.98
16031380--16031695	157	2.0	157	96	0	587	40	21	11	26	1.87
16036004--16036150	73	2.0	74	98	1	287	30	8	20	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16036156--16036195	20	2.0	20	90	0	62	27	10	12	50	1.72
16036141--16036207	34	1.9	35	87	3	100	32	8	11	46	1.72
16036294--16036332	20	2.0	20	94	0	69	48	2	0	48	1.15
16038270--16038323	28	2.0	27	85	3	72	44	3	38	12	1.61
16077137--16077245	47	2.3	47	91	0	173	47	21	14	16	1.82
16080624--16080691	25	2.6	27	86	11	88	25	26	8	39	1.85
16086564--16086648	32	2.6	32	76	9	91	44	17	10	27	1.81
16086641--16086680	20	2.0	20	90	0	62	50	12	10	27	1.72
16086664--16086703	14	2.9	14	84	0	53	42	17	7	32	1.77
16116838--16116908	36	2.0	35	91	5	117	71	0	11	16	1.13
16117770--16117927	44	3.6	43	77	6	138	29	21	21	27	1.99
16118060--16118171	45	2.6	42	81	9	127	31	19	16	32	1.95
16118200--16118456	44	5.7	45	71	15	147	30	21	17	30	1.96
16118381--16118677	85	3.4	85	70	12	247	30	21	17	30	1.96
16118297--16118775	181	2.6	180	86	3	674	31	20	17	31	1.95
16120387--16120502	52	2.3	52	77	15	118	12	21	12	54	1.69
16136191--16136253	9	6.9	9	76	8	65	31	1	1	65	1.12
16136191--16136253	19	3.4	19	80	8	76	31	1	1	65	1.12
16136647--16136711	27	2.4	26	80	7	76	64	0	33	1	1.03
16136650--16136699	22	2.3	22	83	12	68	62	0	36	2	1.07
16137639--16137703	21	3.1	21	72	12	71	55	0	3	41	1.15
16145032--16145268	43	5.6	43	81	6	261	34	22	16	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16147527--16147564	1	38.0	1	100	0	76	100	0	0	0	0.00
16150102--16150151	23	2.2	23	82	10	59	52	0	4	44	1.20
16150350--16150417	21	3.2	21	82	2	73	47	29	0	23	1.52
16150866--16150970	40	2.6	40	87	0	147	30	21	18	29	1.97
16151018--16151119	38	2.6	39	87	4	152	28	24	18	28	1.98
16150769--16151204	150	2.9	146	85	7	562	28	22	18	30	1.97
16153515--16153583	32	2.2	32	94	2	122	39	5	10	44	1.62
16154672--16154727	19	2.8	20	82	17	62	17	1	1	78	0.92
16154678--16154725	22	2.1	23	85	11	64	18	2	0	79	0.84
16154672--16154730	6	10.0	6	74	17	52	18	1	1	77	0.93
16155694--16155719	9	2.9	9	100	0	52	92	0	7	0	0.39
16155693--16155722	10	3.1	10	90	9	53	90	0	10	0	0.47
16159561--16159592	14	2.3	14	94	0	55	37	0	15	46	1.46
16164742--16164795	27	2.0	27	100	0	108	22	11	11	55	1.66
16167874--16167900	14	1.9	14	100	0	54	51	7	3	37	1.48
16167893--16167933	20	2.0	20	90	0	64	73	2	0	24	0.96
16167900--16167938	6	6.2	6	82	11	51	76	2	0	20	0.90
16177393--16177430	1	38.0	1	100	0	76	100	0	0	0	0.00
16179073--16179168	3	32.0	3	82	4	95	60	3	3	33	1.28
16179085--16179192	54	2.0	54	100	0	216	55	5	5	33	1.46
16183542--16183620	13	6.0	13	75	8	61	41	16	0	41	1.48
16183542--16183613	27	2.7	25	80	16	74	43	16	0	40	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16183596--16183662	13	5.0	13	77	13	73	35	10	1	52	1.45
16183593--16183662	28	2.6	27	74	14	81	34	11	1	52	1.46
16183540--16183665	41	3.1	41	85	5	141	38	16	0	44	1.54
16190969--16191092	40	3.1	39	75	3	122	39	19	17	23	1.92
16191137--16191313	40	4.3	40	87	2	237	22	19	27	29	1.98
16191137--16191321	81	2.3	81	86	3	246	21	19	27	31	1.97
16191225--16191423	110	1.8	109	84	5	276	21	19	29	29	1.98
16195158--16195328	43	4.0	43	89	0	234	22	17	31	28	1.96
16197223--16197291	27	2.7	25	84	4	75	21	27	23	27	1.99
16203195--16203262	31	2.3	30	84	5	84	42	8	11	36	1.73
16205459--16205531	30	2.4	30	88	4	103	26	23	10	39	1.87
16205519--16205620	30	3.4	30	86	2	143	19	27	11	41	1.86
16205488--16205620	60	2.2	60	82	9	164	21	26	12	40	1.88
16205519--16205635	60	2.0	60	88	6	175	18	27	13	40	1.89
16208106--16208146	21	2.0	21	90	9	66	51	14	4	29	1.63
16212052--16212238	50	3.7	48	78	9	169	29	26	16	27	1.96
16214074--16214111	19	2.1	18	85	14	51	52	2	2	42	1.29
16217512--16217590	41	1.9	41	92	0	131	26	22	20	30	1.98
16235536--16235564	14	2.1	14	100	0	58	62	0	0	37	0.96
16243663--16243698	18	1.9	18	88	5	54	30	11	22	36	1.89
16249727--16249791	28	2.3	29	83	2	78	38	9	3	49	1.51
16251443--16251468	13	2.0	13	100	0	52	30	7	15	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16251498--16251539	19	2.2	19	83	8	50	28	21	9	40	1.84
16254404--16254438	7	5.0	7	86	13	54	68	0	17	14	1.21
16254811--16254835	13	1.9	13	100	0	50	12	24	8	56	1.62
16267066--16267129	33	1.9	33	96	0	119	39	3	17	40	1.65
16272970--16273066	33	3.0	33	82	7	110	21	11	45	21	1.83
16274576--16274706	50	2.6	49	93	2	217	62	14	2	20	1.42
16274583--16274664	16	5.0	17	71	15	66	64	10	1	23	1.32
16274965--16275050	31	2.6	34	80	14	99	37	29	0	33	1.58
16275399--16275431	11	3.0	11	86	13	50	18	27	39	15	1.90
16292332--16292396	33	2.0	33	96	0	121	43	24	10	21	1.84
16301947--16302080	40	3.3	41	75	7	121	21	17	28	32	1.96
16307598--16307632	14	2.5	14	90	0	52	31	0	14	54	1.40
16316588--16316836	41	6.1	41	84	1	293	36	14	27	20	1.92
16316603--16316748	20	7.2	20	65	10	53	37	16	28	17	1.92
16316745--16316810	21	3.2	21	71	4	62	36	9	28	25	1.87
16316758--16316817	21	3.0	20	69	13	59	38	11	28	21	1.89
16321106--16321143	20	2.0	20	89	5	60	42	5	13	39	1.66
16323957--16324034	25	3.2	25	72	22	74	39	17	0	42	1.50
16331668--16331730	3	21.0	3	100	0	126	0	33	0	66	0.92
16334506--16334566	20	3.3	19	68	17	56	45	19	1	32	1.60
16334493--16334566	36	2.1	36	92	0	121	44	16	1	37	1.56
16334661--16334697	6	6.2	6	100	0	74	51	16	0	32	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16335864--16335913	17	2.9	17	82	14	66	2	22	0	76	0.89
16335877--16335913	13	2.8	13	95	0	65	2	18	0	78	0.87
16335935--16335975	16	2.6	16	84	0	55	29	4	0	65	1.13
16337341--16337446	43	2.5	43	78	9	110	40	23	16	19	1.91
16342611--16342664	28	1.9	28	96	0	99	38	25	16	18	1.92
16343000--16343048	9	5.5	8	81	18	53	24	10	22	42	1.84
16343000--16343048	18	2.7	18	96	0	89	24	10	22	42	1.84
16348958--16349071	53	2.2	53	96	0	210	14	21	11	52	1.72
16350896--16350951	21	2.7	21	85	0	76	26	7	35	30	1.83
16365438--16365498	27	2.3	27	100	0	122	27	19	32	19	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145