genome.fa.s13.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  129  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42380757--42380813	20	2.8	21	81	7	73	28	0	5	66	1.13
42380759--42380799	11	3.8	11	78	18	50	29	0	7	63	1.21
42387869--42387902	2	17.0	2	100	0	68	50	0	0	50	1.00
42390051--42390083	17	2.0	17	88	5	50	3	15	6	75	1.11
42411044--42411102	29	2.0	29	86	0	82	23	11	22	42	1.86
42411610--42411668	12	5.0	12	76	10	50	28	10	11	49	1.72
42411840--42411894	23	2.3	23	81	9	58	27	10	20	41	1.85
42424453--42424529	35	2.2	36	90	2	129	49	1	2	46	1.23
42450726--42450787	19	3.1	19	70	20	63	17	17	17	46	1.84
42450710--42450787	41	1.9	41	94	0	138	17	16	20	44	1.86
42456292--42456709	203	2.1	203	99	0	820	41	13	7	37	1.74
42457313--42457347	16	2.2	16	100	0	70	42	5	0	51	1.25
42460844--42460873	13	2.3	13	94	0	51	23	3	6	66	1.30
42461276--42461303	2	14.0	2	100	0	56	50	0	0	50	1.00
42461585--42461622	5	7.8	5	91	8	53	0	13	2	84	0.73
42461580--42461622	15	2.9	15	80	16	54	0	11	6	81	0.87
42463705--42463769	16	4.1	16	91	0	112	36	6	36	20	1.77
42463749--42463838	45	2.0	44	85	6	119	32	5	26	35	1.80
42464003--42464037	18	2.0	17	88	5	52	54	0	0	45	0.99
42471799--42471861	30	2.1	30	93	0	108	39	4	19	36	1.72
42474331--42474361	16	1.9	16	93	0	53	16	12	19	51	1.76
42475375--42475431	28	2.2	26	82	17	66	8	15	1	73	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42476000--42476033	3	11.3	3	100	0	68	32	0	0	67	0.91
42476032--42476065	3	11.3	3	100	0	68	0	0	32	67	0.91
42476117--42476170	23	2.4	23	84	6	76	42	11	1	44	1.50
42481231--42481357	40	3.2	40	80	10	129	37	22	20	19	1.95
42481248--42481357	40	2.8	40	84	4	143	39	23	19	18	1.92
42481421--42481779	41	8.7	41	86	2	488	18	23	26	31	1.97
42482138--42482170	14	2.3	15	89	5	50	27	0	33	39	1.57
42482205--42482273	15	4.7	15	72	12	54	24	0	36	39	1.56
42482272--42482325	8	7.1	8	75	12	51	20	0	42	37	1.52
42482255--42482311	8	7.5	8	78	7	57	15	0	45	38	1.47
42483019--42483074	16	3.5	16	80	7	69	66	3	7	23	1.33
42483702--42483729	14	2.0	14	100	0	56	14	0	35	50	1.43
42483878--42483935	27	2.1	27	100	0	116	13	13	10	62	1.55
42483997--42484036	12	3.3	12	85	0	53	22	5	12	60	1.52
42483986--42484047	24	2.7	24	76	14	67	24	6	14	54	1.63
42484974--42485036	25	2.6	26	83	14	82	41	20	0	38	1.53
42489089--42489134	21	2.2	21	88	0	65	34	19	43	2	1.63
42489238--42489275	19	2.0	19	94	0	67	28	10	2	57	1.45
42489467--42489849	43	8.9	43	79	9	286	26	20	26	27	1.99
42489468--42489849	86	4.4	87	79	7	345	26	20	26	27	1.99
42489469--42489849	129	3.0	128	85	5	459	25	20	26	27	1.99
42490487--42490522	18	2.0	18	94	0	63	13	11	2	72	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42494575--42494628	27	2.0	27	85	7	74	40	16	1	40	1.59
42499040--42499223	91	2.1	89	83	5	228	34	15	10	39	1.82
42499227--42499297	29	2.4	30	81	6	92	64	1	4	29	1.20
42499226--42499268	18	2.2	20	88	8	63	65	0	6	27	1.18
42499238--42499316	28	2.9	27	85	7	104	64	1	3	30	1.19
42499520--42499589	35	2.0	35	86	5	97	32	2	1	62	1.18
42499689--42499856	88	1.9	88	81	2	201	29	8	19	42	1.82
42501486--42501514	13	2.2	13	100	0	58	37	6	20	34	1.80
42525612--42525678	9	7.6	9	75	9	66	0	13	2	83	0.76
42525609--42525680	17	4.5	15	78	14	65	0	13	2	83	0.76
42525618--42525679	17	3.4	18	82	4	72	0	12	3	83	0.75
42533394--42533488	46	2.1	45	82	7	111	26	21	15	36	1.93
42534613--42534834	43	5.2	43	91	0	336	34	31	17	17	1.93
42534826--42534916	41	2.2	41	100	0	182	30	21	18	28	1.97
42535374--42535403	12	2.5	12	94	0	51	36	13	13	36	1.84
42536263--42536712	194	2.3	193	84	2	580	40	18	13	27	1.89
42546979--42547030	22	2.5	20	80	14	61	23	5	0	71	1.07
42546893--42547018	63	2.0	63	98	0	243	40	6	3	50	1.44
42553041--42553083	20	2.2	19	83	4	50	46	0	9	44	1.35
42554050--42554079	14	2.1	14	100	0	60	23	6	20	50	1.71
42554546--42554592	25	1.9	25	91	4	78	42	12	25	19	1.86
42556427--42556478	23	2.3	22	75	21	54	9	23	1	65	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42564276--42564326	27	1.9	27	84	11	70	60	15	15	7	1.56
42571586--42571821	117	2.0	118	99	0	465	30	20	16	32	1.95
42575663--42575711	24	2.1	23	85	11	64	34	14	14	36	1.86
42576836--42576890	23	2.4	23	82	11	60	49	3	0	47	1.19
42580822--42580864	18	2.3	19	80	15	54	62	2	0	34	1.08
42582099--42582138	19	2.1	19	95	0	71	30	22	10	37	1.87
42587794--42587946	43	3.6	43	75	8	123	30	26	15	27	1.96
42588307--42588931	311	2.0	311	100	0	1250	39	20	5	35	1.75
42590792--42590845	27	2.0	28	88	3	83	40	5	18	35	1.74
42599530--42599924	43	9.2	43	85	3	517	31	27	15	24	1.96
42599530--42599880	129	2.7	129	94	1	596	31	27	15	24	1.96
42603235--42604094	107	8.1	105	82	8	1010	32	12	12	42	1.80
42603152--42604136	215	4.5	216	86	6	1366	32	11	13	42	1.80
42603946--42604307	187	2.0	184	93	2	627	29	12	11	45	1.78
42604875--42604930	22	2.5	22	74	5	60	39	32	0	28	1.57
42605109--42605167	16	3.8	15	84	6	64	33	42	0	23	1.55
42605109--42605169	31	2.0	31	83	6	79	32	42	0	24	1.55
42605193--42605232	15	2.7	15	88	3	55	35	42	0	22	1.54
42605403--42605515	44	2.6	44	77	12	108	35	38	0	24	1.62
42605505--42605540	15	2.5	15	95	4	65	33	41	0	25	1.55
42605726--42605800	15	4.9	15	70	14	55	32	44	1	22	1.62
42605743--42605793	8	6.6	8	80	6	61	31	49	0	19	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42605743--42605800	23	2.5	23	91	0	98	32	46	0	20	1.51
42605747--42605804	8	7.6	8	78	5	50	36	41	0	22	1.54
42605821--42605863	15	2.9	15	89	3	61	37	39	0	23	1.55
42604905--42606243	631	2.1	616	95	2	2378	41	28	2	27	1.68
42604718--42606243	631	2.5	602	87	9	2198	41	27	2	28	1.68
42606142--42606170	15	1.9	15	100	0	58	37	41	0	20	1.53
42606136--42606172	15	2.6	14	87	8	56	35	43	0	21	1.53
42606363--42606486	41	3.0	42	90	7	200	31	31	17	19	1.95
42612271--42612305	3	11.7	3	100	0	70	31	0	0	68	0.90
42612972--42613032	26	2.4	25	77	20	65	65	4	3	26	1.28
42613306--42613441	40	3.4	40	79	7	143	38	22	19	19	1.93
42614918--42614959	22	1.9	22	90	0	66	23	0	33	42	1.55
42614923--42614971	14	3.4	14	80	5	62	22	0	34	42	1.54
42614973--42615022	14	3.3	15	86	8	66	18	0	46	36	1.49
42614966--42615005	21	1.9	21	89	0	62	15	0	42	42	1.46
42614973--42615024	17	3.4	16	86	7	65	19	0	44	36	1.51
42619917--42619943	13	2.1	13	100	0	54	29	0	0	70	0.88
42619969--42620113	43	3.4	42	81	5	166	24	15	31	28	1.96
42620904--42620938	5	6.6	5	93	6	52	82	0	0	17	0.66
42620903--42620945	21	2.0	21	86	8	61	81	0	2	16	0.79
42625499--42625567	35	2.0	35	94	0	120	27	18	23	30	1.98
42626150--42626229	25	2.9	27	76	10	83	60	0	3	36	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42628884--42628932	8	5.9	8	83	4	62	71	2	4	22	1.13
42628886--42628932	17	2.8	16	81	12	58	72	2	4	21	1.12
42628884--42628943	8	6.8	9	79	11	54	70	1	3	25	1.12
42628927--42629010	29	2.8	30	75	12	91	59	1	4	34	1.26
42628862--42629006	10	15.4	9	68	16	57	61	1	4	33	1.24
42629154--42629206	27	2.0	26	85	10	72	43	3	0	52	1.19
42629512--42629598	10	8.8	10	67	16	56	65	2	2	29	1.17
42629512--42629553	22	1.9	22	90	0	66	71	2	2	23	1.10
42633173--42633366	44	4.4	43	65	12	108	27	26	18	27	1.98
42633079--42634461	132	10.5	132	92	0	2072	28	24	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145