genome.fa.s13.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  32  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11609113--11609168	20	2.8	19	84	7	67	23	0	5	71	1.06
11609962--11610013	25	2.1	25	100	0	104	34	15	3	46	1.64
11614418--11614530	33	3.5	33	74	6	113	31	18	24	24	1.97
11614311--11614503	104	1.8	105	84	5	266	32	17	25	25	1.97
11614416--11614569	66	2.3	66	88	3	231	31	18	25	24	1.98
11614416--11614591	66	2.7	66	85	6	216	31	18	25	24	1.98
11618363--11618465	51	2.0	51	96	0	188	40	6	16	35	1.75
11619454--11619693	117	2.1	118	98	1	466	40	9	10	40	1.70
11622204--11622544	41	8.3	41	79	5	305	18	24	25	31	1.97
11622892--11622929	15	2.5	16	83	12	53	18	0	44	36	1.50
11623849--11623903	28	2.0	28	85	7	76	47	5	7	40	1.54
11624773--11624816	18	2.5	18	88	3	63	20	0	43	36	1.52
11624916--11625041	66	1.9	67	85	4	175	38	16	28	15	1.90
11625032--11625082	21	2.4	21	86	0	75	35	15	43	5	1.71
11625359--11625780	43	9.8	43	82	4	368	26	20	26	27	1.99
11625360--11625777	172	2.4	171	80	3	435	26	20	25	27	1.99
11633885--11633932	16	2.9	16	75	3	51	54	6	6	33	1.51
11643287--11643319	16	2.0	17	88	5	50	60	18	9	12	1.57
11646582--11646620	15	2.7	15	92	4	62	38	10	15	35	1.81
11646637--11646723	33	2.6	33	75	13	99	27	8	18	45	1.77
11649682--11649730	6	8.2	6	93	0	62	44	0	55	0	0.99
11649684--11649739	18	3.1	18	86	2	67	42	0	57	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11649702--11649739	6	6.2	6	93	3	58	36	0	63	0	0.95
11650698--11650747	22	2.3	22	100	0	100	14	18	8	60	1.58
11652438--11652534	47	2.1	47	98	0	185	56	11	13	18	1.66
11664323--11664360	19	2.0	19	100	0	76	57	0	10	31	1.32
11665549--11665635	43	2.0	44	90	2	140	24	24	2	49	1.62
11666590--11666794	100	2.0	100	89	1	313	38	25	7	28	1.83
11669680--11669855	50	3.5	49	82	6	194	36	14	14	34	1.87
11670565--11670591	14	1.9	14	100	0	54	37	14	0	48	1.45
11679824--11679858	2	17.5	2	100	0	70	0	48	0	51	1.00
11688519--11688565	22	2.2	22	85	11	62	55	0	4	40	1.19
11688598--11688636	17	2.3	17	91	8	62	56	0	2	41	1.13
11692176--11692226	24	2.2	23	92	3	84	37	5	3	52	1.44
11695061--11695091	3	10.7	3	93	6	55	67	0	0	32	0.91
11696150--11696272	45	2.7	46	88	5	180	25	24	22	27	2.00
11696200--11696362	44	3.7	44	78	5	150	25	22	22	30	1.99
11696747--11696846	44	2.3	44	91	3	157	31	25	20	24	1.98
11696859--11697335	88	5.4	88	93	0	810	20	24	27	27	1.99
11706180--11706230	26	2.0	26	88	3	77	52	1	3	41	1.31
11706837--11706867	16	1.9	16	93	0	53	61	3	0	35	1.12
11706982--11707040	30	2.0	30	86	0	82	50	11	6	30	1.65
11716287--11716342	29	1.9	29	96	0	103	32	14	17	35	1.90
11745806--11745986	90	2.0	91	80	6	206	44	12	11	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11750734--11750791	19	3.1	18	75	18	55	1	17	5	75	1.06
11757179--11757218	18	2.2	18	90	0	62	57	5	15	22	1.57
11765320--11765362	6	6.5	6	82	15	50	18	2	60	18	1.47
11775168--11775405	41	5.9	41	82	3	239	23	19	26	30	1.98
11775185--11775399	81	2.6	82	82	2	245	25	18	25	30	1.98
11775168--11775403	122	1.9	122	80	1	276	24	19	26	30	1.98
11775656--11775725	28	2.4	29	81	11	74	17	0	37	45	1.48
11775656--11775727	15	5.1	14	73	15	67	18	0	37	44	1.50
11775656--11775727	7	10.1	7	75	14	67	18	0	37	44	1.50
11778926--11778973	25	1.9	25	82	0	60	25	2	22	50	1.60
11778995--11779066	21	3.4	21	75	7	56	19	1	41	37	1.60
11779253--11779298	21	2.2	21	92	0	74	19	0	41	39	1.52
11779248--11779300	7	7.6	7	84	0	61	20	0	35	43	1.52
11779675--11780077	127	3.2	125	68	10	334	30	15	20	34	1.93
11779669--11780170	251	2.0	251	92	0	826	31	16	19	32	1.94
11781857--11781982	67	1.9	67	81	6	157	45	7	5	41	1.57
11781848--11781990	67	2.1	67	79	6	155	46	6	4	41	1.52
11782079--11782120	15	2.8	15	88	0	57	38	4	0	57	1.20
11782095--11782128	17	1.9	18	88	5	52	38	5	0	55	1.24
11782674--11782870	9	21.2	9	71	13	123	46	15	2	35	1.59
11782851--11782892	22	1.9	22	85	0	57	45	14	7	33	1.72
11782944--11782973	9	3.3	9	100	0	60	46	20	0	33	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11789814--11789864	21	2.4	21	83	0	66	31	15	49	3	1.63
11789774--11789951	87	2.0	87	87	0	257	36	17	33	12	1.88
11789916--11789971	21	2.7	21	88	0	85	37	19	39	3	1.69
11790273--11790432	42	3.8	42	84	3	214	27	19	24	28	1.98
11790273--11790432	85	1.9	84	88	3	241	27	19	24	28	1.98
11791036--11791072	16	2.3	16	90	0	56	37	2	35	24	1.70
11791292--11791529	121	2.0	120	98	0	458	51	4	0	42	1.28
11796410--11796443	16	2.1	16	88	0	50	35	0	8	55	1.31
11797666--11797781	61	1.9	58	87	5	169	43	0	4	51	1.27
11797668--11797801	58	2.3	58	82	8	146	43	1	5	49	1.36
11800952--11800985	14	2.5	14	85	4	52	29	35	14	20	1.93
11802073--11802117	24	1.9	24	90	4	74	26	6	0	66	1.16
11802073--11802115	11	3.7	11	79	11	50	25	4	0	69	1.07
11802282--11802326	19	2.4	19	85	7	56	35	2	6	55	1.38
11802338--11802404	18	3.6	18	72	23	57	34	4	8	52	1.53
11802689--11802746	19	3.2	18	78	9	55	17	3	5	74	1.15
11808792--11809275	44	11.0	44	63	8	196	28	28	23	19	1.98
11808778--11809275	88	5.7	88	90	0	771	29	27	23	19	1.98
11808778--11809409	264	2.4	264	86	1	829	29	26	23	20	1.99
11808778--11809496	88	8.2	88	87	1	725	29	25	23	21	1.99
11809277--11809510	44	5.4	44	72	4	213	28	22	23	25	1.99
11809256--11809523	87	3.1	87	95	0	457	29	22	24	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11809299--11809517	43	5.0	43	68	8	183	27	21	25	25	1.99
11810020--11810053	14	2.5	14	85	4	52	29	35	14	20	1.93
11811175--11811233	10	6.1	10	72	7	50	35	5	6	52	1.50
11811183--11811249	18	3.6	18	72	23	57	34	4	8	52	1.53
11811429--11811490	8	6.8	8	74	25	52	16	1	3	79	0.95
11811429--11811490	28	2.2	28	85	5	81	16	1	3	79	0.95
11811430--11811467	20	2.0	20	94	5	69	13	0	2	84	0.73
11813396--11813445	22	2.3	22	78	0	55	30	36	18	16	1.92
11824178--11824233	20	2.8	21	78	8	62	66	1	1	30	1.12
11824187--11824266	28	2.8	27	81	12	88	62	0	2	35	1.09
11824214--11824240	11	2.5	11	100	0	54	66	0	0	33	0.92
11824259--11824336	9	8.6	9	73	9	52	69	3	2	24	1.18
11824258--11824337	19	4.3	18	73	9	65	70	3	2	23	1.16
11824247--11824346	38	2.6	38	81	7	123	68	3	3	26	1.19
11824247--11824358	38	3.0	36	78	8	111	66	3	4	25	1.27
11825996--11826066	37	1.9	37	88	0	106	39	9	14	36	1.79
11828913--11829026	46	2.5	46	90	2	169	28	22	14	34	1.93
11831512--11831549	9	4.3	9	83	6	51	57	28	2	10	1.45
11848610--11848818	92	2.3	91	86	5	278	45	3	3	46	1.39
11848746--11848793	26	1.9	25	84	16	64	45	0	2	52	1.12
11848968--11849009	15	2.7	16	82	14	52	45	0	2	52	1.13
11848959--11849000	15	2.9	15	82	10	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11848943--11849255	153	2.0	156	92	2	524	46	5	4	43	1.45
11849378--11849413	16	2.2	16	100	0	72	38	36	0	25	1.56
11853053--11853110	22	2.6	22	79	15	75	32	6	17	43	1.75
11853143--11853434	146	2.0	146	93	0	503	27	10	17	44	1.82
11855695--11855730	17	2.2	17	90	5	56	2	19	0	77	0.88
11855682--11855730	17	3.1	16	82	5	55	4	16	4	75	1.11
11862080--11862126	17	2.6	18	80	10	60	17	10	14	57	1.65
11880026--11880137	54	2.1	54	88	3	163	16	25	33	24	1.96
11882526--11882565	18	2.2	18	95	0	71	35	15	15	35	1.88
11883046--11883094	24	2.0	24	96	0	89	36	18	20	24	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145