genome.fa.s13.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  112  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37480484--37480638	21	7.4	20	75	13	118	64	11	7	16	1.47
37486218--37486366	70	2.1	71	95	5	266	30	5	10	54	1.56
37493468--37493506	3	13.0	3	88	0	60	61	0	38	0	0.96
37493462--37493506	9	5.0	9	91	0	63	57	0	42	0	0.98
37493895--37493925	16	1.9	16	93	0	53	25	16	22	35	1.94
37497090--37497219	6	20.7	6	73	9	98	55	14	8	21	1.66
37497089--37497219	30	4.4	30	74	14	126	54	14	9	21	1.67
37497168--37497231	6	10.7	6	83	6	58	59	14	7	18	1.58
37497698--37497737	21	1.9	21	94	0	71	22	30	20	27	1.98
37499366--37499423	6	9.7	6	96	0	107	32	1	17	48	1.57
37500555--37500615	28	2.2	28	93	0	104	36	16	14	32	1.89
37500743--37500868	63	2.0	63	100	0	252	31	15	20	31	1.94
37504596--37504642	7	6.7	7	100	0	94	27	0	14	57	1.38
37505139--37505212	30	2.5	30	75	6	78	31	39	16	13	1.87
37505290--37505332	18	2.4	19	84	7	54	20	30	9	39	1.84
37505781--37505821	7	6.0	7	86	13	59	46	0	0	53	1.00
37505846--37505937	21	4.3	21	88	2	139	45	32	1	20	1.58
37505846--37505937	43	2.2	42	90	2	139	45	32	1	20	1.58
37508123--37508160	19	2.0	19	100	0	76	31	26	10	31	1.90
37512049--37512106	26	2.4	25	83	11	77	43	12	12	32	1.79
37522158--37522226	27	2.6	27	83	0	93	27	33	31	7	1.84
37522262--37522288	13	2.1	13	100	0	54	62	0	37	0	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37522280--37522336	10	5.7	10	89	0	78	71	0	28	0	0.86
37522282--37522338	5	11.4	5	76	0	60	70	0	29	0	0.88
37522274--37522344	30	2.4	30	92	0	124	69	0	30	0	0.89
37522270--37522344	20	3.8	19	81	15	82	69	0	30	0	0.89
37530158--37530266	39	2.8	40	90	4	168	34	14	28	22	1.93
37535417--37535451	9	4.0	9	96	3	63	34	0	0	65	0.93
37539610--37539700	45	2.0	45	85	2	121	37	28	6	27	1.82
37539681--37539732	16	3.2	16	97	0	95	38	34	0	26	1.57
37543363--37544222	430	2.0	430	100	0	1720	36	13	14	36	1.85
37546275--37546346	31	2.3	31	97	0	135	34	22	31	11	1.89
37550112--37550154	21	2.0	22	82	8	54	25	0	23	51	1.49
37554425--37554457	16	2.1	16	94	0	57	36	6	33	24	1.80
37560112--37560146	18	1.9	18	94	0	61	25	28	5	40	1.78
37560111--37560153	18	2.4	18	84	0	59	25	27	4	41	1.75
37562837--37562920	36	2.3	36	85	2	105	42	17	4	34	1.71
37563124--37563247	43	2.9	43	81	11	146	29	28	20	21	1.98
37566925--37567696	126	6.2	126	88	1	1025	28	16	17	37	1.91
37566928--37567696	251	3.1	251	86	2	1046	28	16	17	38	1.91
37567782--37567886	33	3.2	32	76	6	113	38	13	0	48	1.42
37580309--37580377	6	11.5	6	95	4	122	0	14	0	85	0.60
37593826--37593866	21	2.0	21	85	9	57	43	17	0	39	1.49
37596720--37596831	55	2.0	55	96	0	206	47	14	1	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37600488--37600541	28	1.9	28	81	7	65	46	1	3	48	1.30
37600583--37600755	87	2.0	88	96	1	321	50	13	5	30	1.64
37600583--37600755	44	4.0	44	96	1	321	50	13	5	30	1.64
37604507--37604546	20	2.0	20	85	9	55	27	0	17	55	1.43
37605314--37605358	21	2.2	21	84	11	58	44	0	2	53	1.13
37607287--37607391	43	2.4	43	79	6	106	37	23	17	21	1.94
37607566--37607628	18	3.2	20	66	25	53	49	9	3	38	1.51
37613649--37613696	14	3.3	14	82	5	51	37	33	0	29	1.58
37613660--37613703	14	3.1	14	87	6	54	36	38	0	25	1.56
37613703--37613743	21	2.0	20	85	4	55	39	41	0	19	1.52
37613970--37614031	22	2.9	22	80	7	56	35	41	1	20	1.62
37614032--37614072	15	2.8	15	88	3	57	41	31	0	26	1.56
37614419--37614618	41	4.9	41	79	4	192	30	29	18	21	1.97
37614419--37614585	80	2.1	80	80	4	192	31	28	18	22	1.97
37615524--37615553	15	2.0	15	93	0	51	56	0	0	43	0.99
37619110--37619213	41	2.5	41	93	3	174	28	17	27	25	1.97
37619192--37619288	41	2.4	41	96	0	176	27	20	28	22	1.99
37634567--37634624	28	2.0	30	93	6	102	39	3	3	53	1.35
37638591--37638628	15	2.5	16	87	12	62	36	0	0	63	0.95
37638830--37638878	23	2.1	23	81	7	55	28	4	2	65	1.22
37641502--37641653	26	5.8	26	85	1	162	18	15	30	35	1.92
37641499--37641658	52	3.1	52	80	0	185	20	15	30	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37641499--37641658	78	2.1	78	82	0	194	20	15	30	34	1.93
37642781--37642858	29	2.7	29	79	0	93	20	34	21	23	1.97
37649752--37649794	21	2.0	21	95	0	77	34	11	13	39	1.82
37652505--37652548	23	1.9	23	85	0	61	15	27	20	36	1.93
37668738--37669080	171	2.0	172	99	0	679	40	9	8	40	1.69
37684613--37684667	26	2.1	27	82	3	67	58	1	9	30	1.40
37693367--37693404	19	2.0	20	94	5	69	39	5	18	36	1.73
37699463--37699570	44	2.5	44	87	3	148	33	29	14	22	1.94
37703568--37703605	18	2.0	20	90	10	62	76	5	0	18	0.97
37708677--37708721	22	2.0	23	82	4	56	60	2	0	37	1.09
37711763--37711804	14	2.9	15	82	7	50	26	2	7	64	1.32
37712174--37712216	23	2.0	21	86	9	59	72	0	9	18	1.11
37720018--37720058	17	2.5	17	80	4	57	43	2	0	53	1.13
37724985--37725128	70	2.0	72	94	2	256	52	8	2	36	1.46
37724999--37725108	33	3.2	33	72	22	118	50	8	2	39	1.47
37725768--37725809	21	2.0	20	86	13	59	28	7	4	59	1.44
37725954--37726138	63	2.9	63	80	0	217	47	12	8	31	1.72
37753267--37753304	19	2.1	19	90	5	60	23	0	10	65	1.23
37753688--37753734	3	15.7	3	86	8	69	34	2	0	63	1.06
37753691--37753728	14	2.8	14	96	4	69	34	0	0	65	0.93
37753687--37753742	20	2.7	21	83	8	62	32	5	0	62	1.18
37753844--37753877	17	1.9	17	88	5	50	26	14	0	58	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37759108--37759409	144	2.1	144	90	1	471	35	18	22	23	1.96
37762570--37762618	24	2.1	23	84	3	62	46	4	2	46	1.33
37764955--37765027	21	3.5	21	69	3	58	20	26	32	20	1.97
37775223--37775538	158	2.0	159	88	3	476	32	14	16	36	1.89
37776039--37776069	15	2.1	15	100	0	62	19	38	0	41	1.51
37777052--37777090	18	2.2	18	95	0	69	35	23	7	33	1.83
37777346--37777375	3	10.0	3	100	0	60	33	0	0	66	0.92
37777621--37777646	3	8.7	3	100	0	52	30	34	0	34	1.58
37778866--37778986	29	4.2	28	79	10	111	51	33	1	13	1.51
37784803--37785091	143	2.0	143	95	0	515	41	9	20	28	1.83
37789403--37789476	37	2.0	37	100	0	148	45	18	16	18	1.85
37789670--37789828	82	1.9	82	100	0	318	37	23	6	33	1.80
37801227--37801314	20	4.3	20	80	8	97	45	9	7	37	1.65
37801227--37801314	40	2.1	41	83	8	108	45	9	7	37	1.65
37801234--37801351	60	2.0	60	85	6	159	44	12	9	33	1.75
37801671--37801755	42	2.0	42	97	0	161	42	21	12	23	1.87
37808682--37808711	6	5.0	6	100	0	60	16	16	16	50	1.79
37813601--37813627	3	9.0	3	100	0	54	66	0	0	33	0.92
37814059--37814094	18	1.9	19	88	5	56	36	0	8	55	1.30
37817817--37817855	18	2.2	18	90	0	60	17	17	15	48	1.81
37820037--37820094	29	2.0	29	96	0	107	46	6	8	37	1.61
37820680--37820723	16	2.8	15	77	12	52	50	2	0	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37824129--37824192	26	2.6	24	77	18	60	60	4	4	29	1.37
37825308--37825358	25	2.0	25	100	0	102	27	19	17	35	1.94
37827562--37827615	18	2.8	19	80	11	65	61	0	1	37	1.07
37827570--37827615	18	2.4	20	85	7	69	58	0	2	39	1.10
37829355--37829546	91	2.1	91	86	4	273	31	25	10	32	1.90
37830127--37830256	49	2.6	49	77	8	122	21	23	21	33	1.98
37830229--37830375	62	2.5	61	78	11	137	23	29	21	25	1.99
37833680--37834133	229	2.0	228	80	9	517	35	20	11	33	1.88
37837724--37837921	42	4.7	42	96	0	360	32	23	20	23	1.98
37837729--37837966	84	2.8	84	88	0	260	32	21	20	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145